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3-D QSAutogrid/R: An Alternative Procedure To Build 3-D QSAR Models. Methodologies and Applications

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Molecular Interaction Fields
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AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
inferredcites →https://doi.org/10.1002/qsar.19930120103openalex-snapshot
Generating Optimal Linear PLS Estimations (GOLPE): An Advanced Chemometric Tool for Handling 3D‐QSAR Problems
inferredcites →https://doi.org/10.1002/qsar.19930120205openalex-snapshot
The Probability of Chance Correlation Using Partial Least Squares (PLS)
inferredcites →https://doi.org/10.1002/qsar.19930120302openalex-snapshot
D‐Optimal Designs in QSAR
inferredcites →https://doi.org/10.1007/0-306-46858-1openalex-snapshot
3D QSAR in Drug Design
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ggplot2: Elegant Graphics for Data Analysis
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Recent Advances in QSAR Studies
inferredcites →https://doi.org/10.1007/s00894-009-0519-9openalex-snapshot
Insight into ligand selectivity in HCV NS5B polymerase: molecular dynamics simulations, free energy decomposition and docking
inferredcites →https://doi.org/10.1007/s00894-010-0684-xopenalex-snapshot
Open3DQSAR: a new open-source software aimed at high-throughput chemometric analysis of molecular interaction fields
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Identification of novel inhibitors of HCV RNA-dependent RNA polymerase by pharmacophore-based virtual screening and in vitro evaluation
inferredcites →https://doi.org/10.1021/ci9004749openalex-snapshot
Combining 3-D Quantitative Structure−Activity Relationship with Ligand Based and Structure Based Alignment Procedures for in Silico Screening of New Hepatitis C Virus NS5B Polymerase Inhibitors
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Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
inferredcites →https://doi.org/10.1021/jm00007a003openalex-snapshot
Cross-Validated R2-Guided Region Selection for Comparative Molecular Field Analysis: A Simple Method To Achieve Consistent Results
inferredcites →https://doi.org/10.1021/jm00042a012openalex-snapshot
Comparative Molecular Field Analysis Using GRID Force-Field and GOLPE Variable Selection Methods in a Study of Inhibitors of Glycogen Phosphorylase b
inferredcites →https://doi.org/10.1021/jm00145a002openalex-snapshot
A computational procedure for determining energetically favorable binding sites on biologically important macromolecules
inferredcites →https://doi.org/10.1021/jm010488uopenalex-snapshot
Quantitative Structure−Activity Relationship Analysis of Functionalized Amino Acid Anticonvulsant Agents Using k Nearest Neighbor and Simulated Annealing PLS Methods
inferredcites →https://doi.org/10.1021/jm049117eopenalex-snapshot
3D-QSAR Comparative Molecular Field Analysis on Opioid Receptor Antagonists: Pooling Data from Different Studies
inferredcites →https://doi.org/10.1021/jm050855sopenalex-snapshot
3-(1,1-Dioxo-2H-(1,2,4)-benzothiadiazin-3-yl)-4-hydroxy-2(1H)-quinolinones, Potent Inhibitors of Hepatitis C Virus RNA-Dependent RNA Polymerase
inferredcites →https://doi.org/10.1021/jm9503052openalex-snapshot
Antitumor Agents. 163. Three-Dimensional Quantitative Structure−Activity Relationship Study of 4‘-O-Demethylepipodophyllotoxin Analogs Using the Modified CoMFA/q2-GRS Approach
inferredcites →https://doi.org/10.1021/jm9608016openalex-snapshot
Smart Region Definition: A New Way To Improve the Predictive Ability and Interpretability of Three-Dimensional Quantitative Structure−Activity Relationships
inferredcites →https://doi.org/10.1023/a:1017069619333openalex-snapshot
GOLPE-guided region selection
inferredcites →https://doi.org/10.1126/science.220.4598.671openalex-snapshot
Optimization by Simulated Annealing
inferredcites →https://doi.org/10.1137/0905052openalex-snapshot
The Collinearity Problem in Linear Regression. The Partial Least Squares (PLS) Approach to Generalized Inverses
inferredcites →https://doi.org/10.1517/17460441.2011.560604openalex-snapshot
The 18th European Symposium on Quantitative Structure–Activity Relationships
inferredcites →https://doi.org/10.2174/156802610790232260openalex-snapshot
3D-QSAR in Drug Design - A Review
inferredcites →https://doi.org/10.2307/1271431openalex-snapshot
An Algorithm for the Construction of "D-Optimal" Experimental Designs
inferredcites →https://doi.org/10.7551/mitpress/1090.001.0001openalex-snapshot
Adaptation in Natural and Artificial Systems

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Molecular interaction fields in drug discovery: recent advances and future perspectives
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Protein-Ligand Docking in Drug Design: Performance Assessment and Binding-Pose Selection
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Comprehensive model of wild-type and mutant HIV-1 reverse transciptases
inferred← citeshttps://doi.org/10.1007/s10822-015-9859-yopenalex-snapshot
Vascular endothelial growth factor receptor-2 (VEGFR-2) inhibitors: development and validation of predictive 3-D QSAR models through extensive ligand- and structure-based approaches
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Disruptor of telomeric silencing 1-like (DOT1L): disclosing a new class of non-nucleoside inhibitors by means of ligand-based and structure-based approaches
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www.3d-qsar.com: a web portal that brings 3-D QSAR to all electronic devices—the Py-CoMFA web application as tool to build models from pre-aligned datasets
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In silico exploration of c-KIT inhibitors by pharmaco-informatics methodology: pharmacophore modeling, 3D QSAR, docking studies, and virtual screening
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Variational principles for mechanistic quantitative structure–activity relationship (QSAR) studies: application on uracil derivatives’ anti-HIV action
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Design of novel amyloid β aggregation inhibitors using QSAR, pharmacophore modeling, molecular docking and ADME prediction
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Molecular Fields to Assess Recognition Forces and Property Spaces☆
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Synthesis, biological evaluation and docking analysis of a new series of methylsulfonyl and sulfamoyl acetamides and ethyl acetates as potent COX-2 inhibitors
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Structural insights of SmKDAC8 inhibitors: Targeting Schistosoma epigenetics through a combined structure-based 3D QSAR, in vitro and synthesis strategy
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Design, synthesis and biological evaluation of new classes of thieno[3,2-d]pyrimidinone and thieno[1,2,3]triazine as inhibitor of vascular endothelial growth factor receptor-2 (VEGFR-2)
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Novel coumarin- and quinolinone-based polycycles as cell division cycle 25-A and -C phosphatases inhibitors induce proliferation arrest and apoptosis in cancer cells
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Synthesis, biological evaluation and quantitative structure-active relationships of 1,3-thiazolidin-4-one derivatives. A promising chemical scaffold endowed with high antifungal potency and low cytotoxicity
inferred← citeshttps://doi.org/10.1021/acs.jchemed.0c00117openalex-snapshot
Teaching and Learning Computational Drug Design: Student Investigations of 3D Quantitative Structure–Activity Relationships through Web Applications
inferred← citeshttps://doi.org/10.1021/acs.jcim.1c00530openalex-snapshot
Human Estrogen Receptor α Antagonists. Part 1: 3-D QSAR-Driven Rational Design of Innovative Coumarin-Related Antiestrogens as Breast Cancer Suppressants through Structure-Based and Ligand-Based Studies
inferred← citeshttps://doi.org/10.1021/acs.jcim.2c00559openalex-snapshot
Bovine Serum Amine Oxidase and Polyamine Analogues: Chemical Synthesis and Biological Evaluation Integrated with Molecular Docking and 3-D QSAR Studies
inferred← citeshttps://doi.org/10.1021/acs.jcim.5b00603openalex-snapshot
An Automated Strategy for Binding-Pose Selection and Docking Assessment in Structure-Based Drug Design
inferred← citeshttps://doi.org/10.1021/acs.jcim.6b00608openalex-snapshot
Understanding the Molecular Determinant of Reversible Human Monoamine Oxidase B Inhibitors Containing 2H-Chromen-2-One Core: Structure-Based and Ligand-Based Derived Three-Dimensional Quantitative Structure–Activity Relationships Predictive Models
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.5b01632openalex-snapshot
Design and Synthesis of Simplified Largazole Analogues as Isoform-Selective Human Lysine Deacetylase Inhibitors
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.6b00718openalex-snapshot
New Inhibitors of Indoleamine 2,3-Dioxygenase 1: Molecular Modeling Studies, Synthesis, and Biological Evaluation
inferred← citeshttps://doi.org/10.1021/ci300160yopenalex-snapshot
Histone Deacetylase Inhibitors: Structure-Based Modeling and Isoform-Selectivity Prediction
inferred← citeshttps://doi.org/10.1021/ci300625copenalex-snapshot
Pharmacophore and 3D-QSAR Characterization of 6-Arylquinazolin-4-amines as Cdc2-like Kinase 4 (Clk4) and Dual Specificity Tyrosine-phosphorylation-regulated Kinase 1A (Dyrk1A) Inhibitors
inferred← citeshttps://doi.org/10.1021/ci400132qopenalex-snapshot
Pharmacophore Assessment Through 3-D QSAR: Evaluation of the Predictive Ability on New Derivatives by the Application on a Series of Antitubercular Agents
inferred← citeshttps://doi.org/10.1021/ci400759topenalex-snapshot
Hsp90 Inhibitors, Part 1: Definition of 3-D QSAutogrid/R Models as a Tool for Virtual Screening
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QSAR modeling of VOCs degradation by ferrous-activated persulfate oxidation
inferred← citeshttps://doi.org/10.1142/s2737416520500362openalex-snapshot
Computational Studies of 3D-QSAR on a Highly Active Series of Naturally Occurring Nonnucleoside Inhibitors of HIV-1 RT (NNRTI)
inferred← citeshttps://doi.org/10.2174/0929867324666170712115411openalex-snapshot
Rational Drug Design of Antineoplastic Agents Using 3D-QSAR, Cheminformatic, and Virtual Screening Approaches
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In-Silico 3D QSAR And Pharmacophore Mapping of C-Kit Inhibitors Towards Anticancer Drug Development
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Chemical Structure-Biological Activity Models for Pharmacophores’ 3D-Interactions
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Molecular Docking Assessment of Cathinones as 5-HT2AR Ligands: Developing of Predictive Structure-Based Bioactive Conformations and Three-Dimensional Structure-Activity Relationships Models for Future Recognition of Abuse Drugs
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QSAR Modeling Using Quantum Chemical Descriptors of Benzimidazole Analogues With Antiparasitic Properties
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QSAR and docking study: A review
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