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Scaffold Hopping by Fragment Replacement

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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1096-987x(199604)17:5/6<490::aid-jcc1>3.0.co;2-popenalex-snapshot
Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94
inferredcites →https://doi.org/10.1002/3527603743.ch11openalex-snapshot
Structure Modification in Chemical Databases
inferredcites →https://doi.org/10.1002/9783527654307openalex-snapshot
Bioisosteres in medicinal chemistry
inferredcites →https://doi.org/10.1002/jcc.20681openalex-snapshot
Ultrafast shape recognition to search compound databases for similar molecular shapes
inferredcites →https://doi.org/10.1002/minf.201000019openalex-snapshot
Bioisosteric Replacement and Scaffold Hopping in Lead Generation and Optimization
inferredcites →https://doi.org/10.1002/wcms.1106openalex-snapshot
Computational methods for scaffold hopping
inferredcites →https://doi.org/10.1007/bf00124349openalex-snapshot
CAVEAT: A program to facilitate the design of organic molecules
inferredcites →https://doi.org/10.1007/s00894-008-0302-3openalex-snapshot
ParaFrag—an approach for surface-based similarity comparison of molecular fragments
inferredcites →https://doi.org/10.1007/s10822-007-9167-2openalex-snapshot
Optimization of CAMD techniques 3. Virtual screening enrichment studies: a help or hindrance in tool selection?
inferredcites →https://doi.org/10.1007/s10822-008-9170-2openalex-snapshot
What do we know and when do we know it?
inferredcites →https://doi.org/10.1007/s10822-010-9374-0openalex-snapshot
ElectroShape: fast molecular similarity calculations incorporating shape, chirality and electrostatics
inferredcites →https://doi.org/10.1007/s10822-011-9463-8openalex-snapshot
Improving the accuracy of ultrafast ligand-based screening: incorporating lipophilicity into ElectroShape as an extra dimension
inferredcites →https://doi.org/10.1016/1359-6446(96)89014-3openalex-snapshot
Selective estrogen receptor modulators
inferredcites →https://doi.org/10.1016/j.cplett.2007.05.008openalex-snapshot
A simple formula for dielectric polarisation energies: The Sheffield Solvation Model
inferredcites →https://doi.org/10.1016/j.ddtec.2004.10.009openalex-snapshot
Scaffold hopping
inferredcites →https://doi.org/10.1016/j.drudis.2011.05.011openalex-snapshot
Follow-on drugs: How far should chemists look?
inferredcites →https://doi.org/10.1016/j.drudis.2011.10.005openalex-snapshot
Making every SAR point count: the development of Chemistry Connect for the large-scale integration of structure and bioactivity data
inferredcites →https://doi.org/10.1016/j.drudis.2011.10.024openalex-snapshot
Classification of scaffold-hopping approaches
inferredcites →https://doi.org/10.1016/j.jmgm.2009.09.002openalex-snapshot
Molecular similarity including chirality
inferredcites →https://doi.org/10.1016/j.jmgm.2010.08.007openalex-snapshot
Complementing ultrafast shape recognition with an optical isomerism descriptor
inferredcites →https://doi.org/10.1021/ci00057a005openalex-snapshot
SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules
inferredcites →https://doi.org/10.1021/ci060094hopenalex-snapshot
Recore: A Fast and Versatile Method for Scaffold Hopping Based on Small Molecule Crystal Structure Conformations
inferredcites →https://doi.org/10.1021/ci0601517openalex-snapshot
Comparative QSAR- and Fragments Distribution Analysis of Drugs, Druglikes, Metabolic Substances, and Antimicrobial Compounds
inferredcites →https://doi.org/10.1021/ci100031xopenalex-snapshot
Conformer Generation with OMEGA: Algorithm and Validation Using High Quality Structures from the Protein Databank and Cambridge Structural Database
inferredcites →https://doi.org/10.1021/ci100050topenalex-snapshot
Extended-Connectivity Fingerprints
inferredcites →https://doi.org/10.1021/ci2003945openalex-snapshot
Development of a Method To Consistently Quantify the Structural Distance between Scaffolds and To Assess Scaffold Hopping Potential
inferredcites →https://doi.org/10.1021/ci200463ropenalex-snapshot
Improved Chemical Text Mining of Patents with Infinite Dictionaries and Automatic Spelling Correction
inferredcites →https://doi.org/10.1021/ci300157mopenalex-snapshot
Automated Recycling of Chemistry for Virtual Screening and Library Design
inferredcites →https://doi.org/10.1021/ci600426eopenalex-snapshot
Evaluating Virtual Screening Methods: Good and Bad Metrics for the “Early Recognition” Problem
inferredcites →https://doi.org/10.1021/ci900249bopenalex-snapshot
Critical Comparison of Virtual Screening Methods against the MUV Data Set
inferredcites →https://doi.org/10.1021/ci970429iopenalex-snapshot
RECAPRetrosynthetic Combinatorial Analysis Procedure: A Powerful New Technique for Identifying Privileged Molecular Fragments with Useful Applications in Combinatorial Chemistry
inferredcites →https://doi.org/10.1021/cr00023a012openalex-snapshot
From atoms and bonds to three-dimensional atomic coordinates: automatic model builders
inferredcites →https://doi.org/10.1021/jm000375vopenalex-snapshot
Improved Scoring of Ligand−Protein Interactions Using OWFEG Free Energy Grids
inferredcites →https://doi.org/10.1021/jm0300429openalex-snapshot
Drug Rings Database with Web Interface. A Tool for Identifying Alternative Chemical Rings in Lead Discovery Programs
inferredcites →https://doi.org/10.1021/jm040163oopenalex-snapshot
A Shape-Based 3-D Scaffold Hopping Method and Its Application to a Bacterial Protein−Protein Interaction
inferredcites →https://doi.org/10.1021/jm061259gopenalex-snapshot
SHOP: Scaffold HOPping by GRID-Based Similarity Searches
inferredcites →https://doi.org/10.1021/jm980642lopenalex-snapshot
2,3-Diarylcyclopentenones as Orally Active, Highly Selective Cyclooxygenase-2 Inhibitors
inferredcites →https://doi.org/10.1093/nar/gkr777openalex-snapshot
ChEMBL: a large-scale bioactivity database for drug discovery
inferredcites →https://doi.org/10.1093/nar/gks1059openalex-snapshot
SwissBioisostere: a database of molecular replacements for ligand design
inferredcites →https://doi.org/10.1098/rsif.2009.0170openalex-snapshot
Prospective virtual screening with Ultrafast Shape Recognition: the identification of novel inhibitors of arylamine N -acetyltransferases
inferredcites →https://doi.org/10.1098/rsif.2012.0569openalex-snapshot
Hierarchical virtual screening for the discovery of new molecular scaffolds in antibacterial hit identification
inferredcites →https://doi.org/10.1107/s0108767305015266openalex-snapshot
Rapid calculation of RMSDs using a quaternion-based characteristic polynomial
inferredcites →https://doi.org/10.1186/1752-153x-2-3openalex-snapshot
A novel hybrid ultrafast shape descriptor method for use in virtual screening
inferredcites →https://doi.org/10.1186/1758-2946-1-8openalex-snapshot
Estimation of synthetic accessibility score of drug-like molecules based on molecular complexity and fragment contributions
inferredcites →https://doi.org/10.1186/1758-2946-4-27openalex-snapshot
USRCAT: real-time ultrafast shape recognition with pharmacophoric constraints
inferredcites →https://doi.org/10.2174/0929867053363540openalex-snapshot
Bioisosterism: A Useful Strategy for Molecular Modification and Drug Design
inferredcites →https://doi.org/10.4155/fmc.10.280openalex-snapshot
Ultrafast Shape Recognition: Method and Applications

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/1878-0261.13277openalex-snapshot
Fragment‐based drug discovery—the importance of high‐quality molecule libraries
inferred← citeshttps://doi.org/10.1002/9781394249190.ch9openalex-snapshot
Scaffold Hopping andDe NovoDrug Design
inferred← citeshttps://doi.org/10.1002/chem.201600308openalex-snapshot
One‐Step Synthetic Access to Isosteric and Potent Anticancer Nitrogen Heterocycles with the Benzo[c]phenanthridine Scaffold
inferred← citeshttps://doi.org/10.1002/minf.202200039openalex-snapshot
FSDscore: An Effective Target‐focused Scoring Criterion for Virtual Screening
inferred← citeshttps://doi.org/10.1002/slct.201801210openalex-snapshot
A Bioisosteric and Scaffold Hopping Approach for the Design and Synthesis of Double Ring Replacement Analogues of 4‐Aryl‐4 H ‐Chromenes and in silico Tubulin Inhibitor Studies
inferred← citeshttps://doi.org/10.1007/978-1-4939-2486-8_10openalex-snapshot
Computational Methods for Fragment-Based Ligand Design: Growing and Linking
inferred← citeshttps://doi.org/10.1007/978-3-031-20730-3_20openalex-snapshot
Identification of Structural Alerts by Machine Learning and Their Applications in Toxicology
inferred← citeshttps://doi.org/10.1007/s00044-014-1210-yopenalex-snapshot
Rational design, synthesis and evaluation of novel-substituted 1,2,3-triazolylmethyl carbazoles as potent inhibitors of Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1007/s00894-022-05359-6openalex-snapshot
On the ability of machine learning methods to discover novel scaffolds
inferred← citeshttps://doi.org/10.1007/s40242-016-5284-6openalex-snapshot
Synthesis and fungicidal activity of some novel thiazole Schiff bases derived from benzo[d][1,3]dioxole
inferred← citeshttps://doi.org/10.1016/b978-0-12-820472-6.00208-5openalex-snapshot
Computational Medicinal Chemistry to Target GPCRs
inferred← citeshttps://doi.org/10.1016/b978-0-443-18611-0.00008-5openalex-snapshot
Computational methods for scaffold hopping
inferred← citeshttps://doi.org/10.1016/j.abb.2020.108730openalex-snapshot
Artificial intelligence in the early stages of drug discovery
inferred← citeshttps://doi.org/10.1016/j.arabjc.2021.103585openalex-snapshot
Forging of nicotine for the effective management of diabetic wounds: A hybrid of scaffold hopping and molecular dynamics simulation approaches
inferred← citeshttps://doi.org/10.1016/j.ejmech.2025.117864openalex-snapshot
Homoisoflavones: Structural diversity, pharmacological activities, and photocatalytic synthesis strategies - A comprehensive review
inferred← citeshttps://doi.org/10.1016/j.ejmech.2026.119041openalex-snapshot
SENSAAS-Bioisostere: A computational method for 3D shape-guided bioisosteric replacements and scaffold-hopping
inferred← citeshttps://doi.org/10.1021/acs.chemrestox.0c00006openalex-snapshot
Computational Approaches to Identify Structural Alerts and Their Applications in Environmental Toxicology and Drug Discovery
inferred← citeshttps://doi.org/10.1021/acs.jcim.0c00098openalex-snapshot
Exploring Topological Pharmacophore Graphs for Scaffold Hopping
inferred← citeshttps://doi.org/10.1021/acs.jcim.0c00767openalex-snapshot
FragRep: A Web Server for Structure-Based Drug Design by Fragment Replacement
inferred← citeshttps://doi.org/10.1021/acs.jcim.1c00409openalex-snapshot
Sparse Topological Pharmacophore Graphs for Interpretable Scaffold Hopping
inferred← citeshttps://doi.org/10.1021/acs.jcim.9b01120openalex-snapshot
Deep Generative Models for 3D Linker Design
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.5b01746openalex-snapshot
Computational Exploration of Molecular Scaffolds in Medicinal Chemistry
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.5c02642openalex-snapshot
Accurate Prediction of Core-Hopping Transformations Using Molecular Dynamics-Derived Conformational Ensembles: Application to the Discovery of Novel P2X3 Antagonists
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.5c03118openalex-snapshot
The Heterocycle Isostere Explorer: A Computational Tool for the Discovery of Novel Aromatic Heterocyclic Isosteres
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.6b01437openalex-snapshot
Recent Advances in Scaffold Hopping
inferred← citeshttps://doi.org/10.1021/ci500542eopenalex-snapshot
Novel Scaffold Fingerprint (SFP): Applications in Scaffold Hopping and Scaffold-Based Selection of Diverse Compounds
inferred← citeshttps://doi.org/10.1021/jacs.5c00330openalex-snapshot
Catalyst-Controlled Regiodivergent Oxidation of Unsymmetrical Diols
inferred← citeshttps://doi.org/10.1039/c6ob01248eopenalex-snapshot
Identification of novel small-molecule inhibitors targeting menin–MLL interaction, repurposing the antidiarrheal loperamide
inferred← citeshttps://doi.org/10.1039/d2dd00115bopenalex-snapshot
Link-INVENT: generative linker design with reinforcement learning
inferred← citeshttps://doi.org/10.1080/07391102.2020.1786460openalex-snapshot
Development of triple mutant T790M/C797S allosteric EGFR inhibitors: a computational approach
inferred← citeshttps://doi.org/10.1080/07391102.2023.2263890openalex-snapshot
Structure-based virtual screening and fragment replacement to design novel inhibitors of Coxsackievirus A16 (CVA16)
inferred← citeshttps://doi.org/10.1080/17460441.2024.2409674openalex-snapshot
Scaffold hopping approaches for dual-target antitumor drug discovery: opportunities and challenges
inferred← citeshttps://doi.org/10.1093/bioinformatics/btad012openalex-snapshot
MacFrag: segmenting large-scale molecules to obtain diverse fragments with high qualities
inferred← citeshttps://doi.org/10.1093/nar/gkw320openalex-snapshot
USR-VS: a web server for large-scale prospective virtual screening using ultrafast shape recognition techniques
inferred← citeshttps://doi.org/10.1101/2022.04.26.489341openalex-snapshot
Decoding Surface Fingerprints for Protein-Ligand Interactions
inferred← citeshttps://doi.org/10.11606/t.60.2020.tde-24052019-152331openalex-snapshot
Síntese e exploração de múltiplos vetores sintéticos em fragmentos \"heteroaromáticos do futuro\"
inferred← citeshttps://doi.org/10.1186/s13321-021-00565-5openalex-snapshot
Deep scaffold hopping with multimodal transformer neural networks
inferred← citeshttps://doi.org/10.26434/chemrxiv.13011767openalex-snapshot
Deep Scaffold Hopping with Multi-modal Transformer Neural Networks
inferred← citeshttps://doi.org/10.3389/fchem.2021.736509openalex-snapshot
Scaffold Searching of FDA and EMA-Approved Drugs Identifies Lead Candidates for Drug Repurposing in Alzheimer’s Disease
inferred← citeshttps://doi.org/10.4155/fmc-2017-0043openalex-snapshot
Computational Scaffold Hopping: Cornerstone for the Future of Drug Design?
inferred← citeshttps://doi.org/10.5772/59401openalex-snapshot
Structural Analogy — Direct Similarity Versus Topographical Complementarity
inferred← citeshttps://doi.org/10.70675/c04eeb3az351fz48ddza731z6ad3d5044e23openalex-snapshot
Développement d'outils de chémoinformatique pour l'identification d'inhibiteurs de protéines kinases à partir de fragments
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