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HotLig: A Molecular Surface-Directed Approach to Scoring Protein–Ligand Interactions
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1096-987x(19981115)19:14<1639::aid-jcc10>3.0.co;2-bopenalex-snapshot
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
inferredcites →https://doi.org/10.1002/(sici)1096-987x(199908)20:11<1165::aid-jcc7>3.0.co;2-aopenalex-snapshot
BLEEP?potential of mean force describing protein-ligand interactions: I. Generating potential
inferredcites →https://doi.org/10.1002/jcc.20504openalex-snapshot
An iterative knowledge‐based scoring function to predict protein–ligand interactions: I. Derivation of interaction potentials
inferredcites →https://doi.org/10.1002/jcc.20505openalex-snapshot
An iterative knowledge‐based scoring function to predict protein–ligand interactions: II. Validation of the scoring function
inferredcites →https://doi.org/10.1002/prot.20497openalex-snapshot
Comparing protein–ligand docking programs is difficult
inferredcites →https://doi.org/10.1002/prot.20588openalex-snapshot
General and targeted statistical potentials for protein–ligand interactions
inferredcites →https://doi.org/10.1002/prot.21002openalex-snapshot
Minimizing false positives in kinase virtual screens
inferredcites →https://doi.org/10.1002/prot.340080108openalex-snapshot
Crystallographic refinement of human serum retinol binding protein at 2Å resolution
inferredcites →https://doi.org/10.1006/jmbi.1996.0897openalex-snapshot
Development and validation of a genetic algorithm for flexible docking 1 1Edited by F. E. Cohen
inferredcites →https://doi.org/10.1006/jmbi.1999.3371openalex-snapshot
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inferredcites →https://doi.org/10.1007/s10822-006-9060-4openalex-snapshot
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inferredcites →https://doi.org/10.1016/0022-2836(82)90153-xopenalex-snapshot
A geometric approach to macromolecule-ligand interactions
inferredcites →https://doi.org/10.1016/0959-440x(95)80081-6openalex-snapshot
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inferredcites →https://doi.org/10.1016/1074-5521(95)90050-0openalex-snapshot
Molecular recognition of the inhibitor AG-1343 by HIV-1 protease: conformationally flexible docking by evolutionary programming
inferredcites →https://doi.org/10.1016/j.cbpa.2004.05.001openalex-snapshot
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inferredcites →https://doi.org/10.1016/j.drudis.2012.06.011openalex-snapshot
Essential considerations for using protein–ligand structures in drug discovery
inferredcites →https://doi.org/10.1021/ci0100649openalex-snapshot
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inferredcites →https://doi.org/10.1021/ci050400bopenalex-snapshot
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inferredcites →https://doi.org/10.1021/ci200220vopenalex-snapshot
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inferredcites →https://doi.org/10.1021/ci200274qopenalex-snapshot
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inferredcites →https://doi.org/10.1021/jm0105833openalex-snapshot
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inferredcites →https://doi.org/10.1021/jm0203783openalex-snapshot
Comparative Evaluation of 11 Scoring Functions for Molecular Docking
inferredcites →https://doi.org/10.1021/jm0306430openalex-snapshot
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
inferredcites →https://doi.org/10.1021/jm049314dopenalex-snapshot
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inferredcites →https://doi.org/10.1021/jm050436vopenalex-snapshot
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inferredcites →https://doi.org/10.1021/jm200558uopenalex-snapshot
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inferredcites →https://doi.org/10.1021/jm980536jopenalex-snapshot
A General and Fast Scoring Function for Protein−Ligand Interactions: A Simplified Potential Approach
inferredcites →https://doi.org/10.1023/a:1007996124545openalex-snapshot
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inferredcites →https://doi.org/10.1023/a:1007999920146openalex-snapshot
Prediction of binding constants of protein ligands: A fast method for the prioritization of hits obtained from de novo design or 3D database search programs
inferredcites →https://doi.org/10.1023/a:1008729005958openalex-snapshot
A knowledge-based scoring function for protein-ligand interactions: Probing the reference state
inferredcites →https://doi.org/10.1023/a:1016357811882openalex-snapshot
Further development and validation of empirical scoring functions for structure-based binding affinity prediction
inferredcites →https://doi.org/10.1039/c0cp00151aopenalex-snapshot
Scoring functions and their evaluation methods for protein–ligand docking: recent advances and future directions
inferredcites →https://doi.org/10.1107/s0567739476001551openalex-snapshot
Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides
inferredcites →https://doi.org/10.1126/science.6879170openalex-snapshot
Solvent-Accessible Surfaces of Proteins and Nucleic Acids
inferredcites →https://doi.org/10.1166/jbn.2011.1217openalex-snapshot
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inferredcites →https://doi.org/10.1186/1471-2105-11-298openalex-snapshot
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inferredcites →https://doi.org/10.2174/1573409052952314openalex-snapshot
Recent Advances in Docking and Scoring
inferredcites →https://doi.org/10.2174/157340911795677602openalex-snapshot
Molecular Docking: A Powerful Approach for Structure-Based Drug Discovery
inferredcites →https://doi.org/10.3390/ijms11083016openalex-snapshot
Advances and Challenges in Protein-Ligand Docking
inferredcites →https://doi.org/10.6026/97320630008134openalex-snapshot
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/jmr.2471openalex-snapshot
Improvements, trends, and new ideas in molecular docking: 2012–2013 in review
inferred← citeshttps://doi.org/10.1002/minf.201400132openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/slct.201600854openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-981-15-3266-5_21openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.bcp.2014.06.026openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.biomaterials.2016.03.050openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.biomaterials.2017.11.024openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.dib.2016.04.064openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ebiom.2019.06.022openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/ci500081mopenalex-snapshot
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inferred← citeshttps://doi.org/10.1080/00268976.2019.1644384openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa748openalex-snapshot
KORP-PL: a coarse-grained knowledge-based scoring function for protein–ligand interactions
inferred← citeshttps://doi.org/10.1101/2021.09.13.460049openalex-snapshot
Convex-PL R – Revisiting affinity predictions and virtual screening using physics-informed machine learning
inferred← citeshttps://doi.org/10.1186/s12859-018-2206-2openalex-snapshot
Sequence-based prediction of physicochemical interactions at protein functional sites using a function-and-interaction-annotated domain profile database
inferred← citeshttps://doi.org/10.1186/s12929-020-00684-5openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12929-022-00889-wopenalex-snapshot
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inferred← citeshttps://doi.org/10.3390/ijms18081775openalex-snapshot
Human Leukocyte Antigen C*12:02:02 and Killer Immunoglobulin-Like Receptor 2DL5 are Distinctly Associated with Ankylosing Spondylitis in the Taiwanese
inferred← citeshttps://doi.org/10.3390/molecules25071756openalex-snapshot
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inferred← citeshttps://doi.org/10.4049/jimmunol.1301931openalex-snapshot
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inferred← citeshttps://doi.org/10.48550/arxiv.1701.08086openalex-snapshot
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inferred← citeshttps://doi.org/10.6084/m9.figshare.22609471openalex-snapshot
Additional file 1 of Conformational alteration in glycan induces phospholipase Cβ1 activation and angiogenesis
inferred← citeshttps://doi.org/10.70675/d5fdc018z1d3fz4af2zb794zae806588d521openalex-snapshot
Development of novel algorithms for data-driven prediction of interactions between proteins and small molecules
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