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DOCKTITE—A Highly Versatile Step-by-Step Workflow for Covalent Docking and Virtual Screening in the Molecular Operating Environment
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Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1096-987x(199604)17:5/6<490::aid-jcc1>3.0.co;2-popenalex-snapshot
Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94
inferredcites →https://doi.org/10.1002/jcc.20933openalex-snapshot
The generalized Born/volume integral implicit solvent model: Estimation of the free energy of hydration using London dispersion instead of atomic surface area
inferredcites →https://doi.org/10.1002/jcc.21256openalex-snapshot
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
inferredcites →https://doi.org/10.1002/jcc.23136openalex-snapshot
CovalentDock: Automated covalent docking with parameterized covalent linkage energy estimation and molecular geometry constraints
inferredcites →https://doi.org/10.1002/prot.22234openalex-snapshot
Protonate3D: Assignment of ionization states and hydrogen coordinates to macromolecular structures
inferredcites →https://doi.org/10.1002/wcms.1121openalex-snapshot
An overview of the Amber biomolecular simulation package
inferredcites →https://doi.org/10.1006/jmbi.1996.0897openalex-snapshot
Development and validation of a genetic algorithm for flexible docking 1 1Edited by F. E. Cohen
inferredcites →https://doi.org/10.1007/bf00124456openalex-snapshot
MAB, a generally applicable molecular force field for structure modelling in medicinal chemistry
inferredcites →https://doi.org/10.1016/j.bmcl.2013.10.003openalex-snapshot
Drug discovery considerations in the development of covalent inhibitors
inferredcites →https://doi.org/10.1016/j.chembiol.2012.01.003openalex-snapshot
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inferredcites →https://doi.org/10.1016/j.ejmech.2013.03.032openalex-snapshot
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inferredcites →https://doi.org/10.1016/s1359-6446(04)03069-7openalex-snapshot
Ligand efficiency: a useful metric for lead selection
inferredcites →https://doi.org/10.1021/ci100214aopenalex-snapshot
Rapid Context-Dependent Ligand Desolvation in Molecular Docking
inferredcites →https://doi.org/10.1021/ci200274qopenalex-snapshot
DSX: A Knowledge-Based Scoring Function for the Assessment of Protein–Ligand Complexes
inferredcites →https://doi.org/10.1021/ci500118sopenalex-snapshot
Docking Covalent Inhibitors: A Parameter Free Approach To Pose Prediction and Scoring
inferredcites →https://doi.org/10.1021/cr010182vopenalex-snapshot
Irreversible Inhibitors of Serine, Cysteine, and Threonine Proteases
inferredcites →https://doi.org/10.1021/jm050362nopenalex-snapshot
A Critical Assessment of Docking Programs and Scoring Functions
inferredcites →https://doi.org/10.1021/jm058289oopenalex-snapshot
Optimization of Subsite Binding to the β5 Subunit of the Human 20S Proteasome Using Vinyl Sulfones and 2-Keto-1,3,4-oxadiazoles: Syntheses and Cellular Properties of Potent, Selective Proteasome Inhibitors
inferredcites →https://doi.org/10.1021/jm300434zopenalex-snapshot
Molecular Mechanisms of Acquired Proteasome Inhibitor Resistance
inferredcites →https://doi.org/10.1021/jm3013932openalex-snapshot
Docking-Based Virtual Screening of Covalently Binding Ligands: An Orthogonal Lead Discovery Approach
inferredcites →https://doi.org/10.1021/jm3016987openalex-snapshot
Incorporation of Non-natural Amino Acids Improves Cell Permeability and Potency of Specific Inhibitors of Proteasome Trypsin-like Sites
inferredcites →https://doi.org/10.1021/jm4002007openalex-snapshot
Dimerized Linear Mimics of a Natural Cyclopeptide (TMC-95A) Are Potent Noncovalent Inhibitors of the Eukaryotic 20S Proteasome
inferredcites →https://doi.org/10.1021/jm9015685openalex-snapshot
Incorporation of Fluorinated Phenylalanine Generates Highly Specific Inhibitor of Proteasome’s Chymotrypsin-like Sites
inferredcites →https://doi.org/10.1038/nchembio.1666openalex-snapshot
Covalent docking of large libraries for the discovery of chemical probes
inferredcites →https://doi.org/10.1038/nchembio866openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/18.1.130openalex-snapshot
The Binding Database: data management and interface design
inferredcites →https://doi.org/10.1093/nar/gkl999openalex-snapshot
BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities
inferredcites →https://doi.org/10.2174/156802608786786624openalex-snapshot
Medicinal Chemistry and the Molecular Operating Environment (MOE): Application of QSAR and Molecular Docking to Drug Discovery
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inferred← citeshttps://doi.org/10.1002/0471266949.bmc141.pub2openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/aoc.7367openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/aoc.7486openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/aoc.7634openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ardp.201900309openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/chem.202203958openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/cmdc.201900078openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/cmdc.201900472openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jcc.25080openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jhet.3789openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jhet.4752openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/med.21886openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/minf.201800062openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/wcms.70062openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-031-78736-2_12openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s10930-017-9736-8openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s12161-021-02179-xopenalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s13738-020-01987-yopenalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s13738-020-02018-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/bs.armc.2021.01.001openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/bs.pmch.2018.12.002openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.apsb.2025.07.043openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.bbapap.2017.05.009openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.bbrep.2020.100773openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.bioorg.2019.103120openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.bioorg.2026.110377openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.biopha.2016.09.025openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.biopha.2022.113155openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.biopha.2023.114614openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.bmc.2018.07.015openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.bmcl.2015.08.010openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.bmcl.2016.11.036openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ccr.2021.214344openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2023.107908openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2024.108031openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2025.108682openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ctmp.2026.200263openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ejmech.2017.06.019openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ejmech.2022.114460openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ejmech.2026.119356openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e35079openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.inoche.2023.111888openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jics.2026.102624openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jinorgbio.2019.02.001openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jinorgbio.2019.110784openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molliq.2025.126850openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molstruc.2019.03.088openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molstruc.2023.135703openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molstruc.2024.137916openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molstruc.2024.139294openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molstruc.2024.140073openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molstruc.2025.143010openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molstruc.2025.144096openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.nbd.2018.11.009openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.accounts.5c00905openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.inorgchem.7b01732openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.1c01278openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.3c00776openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.3c01900openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.4c00023openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.5c00952openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.8b00960openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.9b00684openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jmedchem.1c02007openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jmedchem.3c02107openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jmedchem.5b02008openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jmedchem.7b00671openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jpcb.3c04710openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acsmedchemlett.4c00321openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acsmedchemlett.6b00276openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acsomega.2c08147openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acsomega.3c01413openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acsomega.8b03457openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/jacs.6b03052openalex-snapshot
Quantum Chemical-Based Protocol for the Rational Design of Covalent Inhibitors
inferred← citeshttps://doi.org/10.1021/jacs.9b02822openalex-snapshot
Rapid Covalent-Probe Discovery by Electrophile-Fragment Screening
inferred← citeshttps://doi.org/10.1021/jacs.9b10377openalex-snapshot
Discovery of Lysine-Targeted eIF4E Inhibitors through Covalent Docking
inferred← citeshttps://doi.org/10.1038/s41592-020-0848-2openalex-snapshot
Macromolecular modeling and design in Rosetta: recent methods and frameworks
inferred← citeshttps://doi.org/10.1038/s41598-022-15050-8openalex-snapshot
Design, synthesis, in vitro biological assessment and molecular modeling insights for novel 3-(naphthalen-1-yl)-4,5-dihydropyrazoles as anticancer agents with potential EGFR inhibitory activity
inferred← citeshttps://doi.org/10.1038/s41598-023-46602-1openalex-snapshot
Green synthesis, biological and molecular docking of some novel sulfonamide thiadiazole derivatives as potential insecticidal against Spodoptera littoralis
inferred← citeshttps://doi.org/10.1038/s41598-024-61387-7openalex-snapshot
Molecular modeling and simulation approaches to characterize potential molecular targets for burdock inulin to instigate protection against autoimmune diseases
inferred← citeshttps://doi.org/10.1038/s41598-024-63345-9openalex-snapshot
Structural, dynamic behaviour, in-vitro and computational investigations of Schiff’s bases of 1,3-diphenyl urea derivatives against SARS-CoV-2 spike protein
inferred← citeshttps://doi.org/10.1038/s41598-024-83767-9openalex-snapshot
Integrating machine learning and structure-based approaches for repurposing potent tyrosine protein kinase Src inhibitors to treat inflammatory disorders
inferred← citeshttps://doi.org/10.1038/s41598-025-14583-yopenalex-snapshot
Inhibition of monkeypox polymerase holoenzyme and methyltransferase using bioactive compounds of black tea: a computational approach
inferred← citeshttps://doi.org/10.1038/s42004-025-01606-yopenalex-snapshot
Structure-based rational design of covalent probes
inferred← citeshttps://doi.org/10.1039/9781839160745-00069openalex-snapshot
Best Practices for Design and Characterization of Covalent Chemical Probes
inferred← citeshttps://doi.org/10.1039/c6md00264aopenalex-snapshot
A combined experimental and computational study on the interaction of nitrogen mustards with DNA
inferred← citeshttps://doi.org/10.1039/d0cb00222dopenalex-snapshot
Fragment-based covalent ligand discovery
inferred← citeshttps://doi.org/10.1039/d0qi01507eopenalex-snapshot
Integrated experimental/computational approaches to characterize the systems formed by vanadium with proteins and enzymes
inferred← citeshttps://doi.org/10.1039/d2cp06083copenalex-snapshot
Comparative binding analysis of WGX50 and Alpha-M with APP family proteins APLP1 and APLP2 using structural-dynamics and free energy calculation approaches
inferred← citeshttps://doi.org/10.1039/d3md00056gopenalex-snapshot
Insights into targeting SARS-CoV-2: design, synthesis, in silico studies and antiviral evaluation of new dimethylxanthine derivatives
inferred← citeshttps://doi.org/10.1039/d4ra02222jopenalex-snapshot
Targeting EGFR/PI3K/AKT/mTOR signaling in lung and colon cancers: synthesis, antitumor evaluation of new 1,2,4-oxdiazoles tethered 1,2,3-triazoles
inferred← citeshttps://doi.org/10.1039/d4ra02970dopenalex-snapshot
Synthesis, docking and biological evaluation of purine-5- N -isosteresas anti-inflammatory agents
inferred← citeshttps://doi.org/10.1039/d5ra00505aopenalex-snapshot
A new natural Cyperol A together with five known compounds from Cyperus rotundus L.: isolation, structure elucidation, DFT analysis, insecticidal and enzyme-inhibition activities and in silico study
inferred← citeshttps://doi.org/10.1042/bst20180202openalex-snapshot
Protein structure and computational drug discovery
inferred← citeshttps://doi.org/10.1055/s-0043-125210openalex-snapshot
Molecular Docking Studies on Isocytosine Analogues as Xanthine Oxidase Inhibitors
inferred← citeshttps://doi.org/10.1080/00397911.2020.1778033openalex-snapshot
Synthesis, cytotoxicity, in-vitro antibacterial screening and in-silico study of novel thieno[2,3-b]pyridines as potential pim-1 inhibitors
inferred← citeshttps://doi.org/10.1080/07391102.2022.2135594openalex-snapshot
Identification of natural marine compounds as potential inhibitors of CDK2 using molecular docking and molecular dynamics simulation approach
inferred← citeshttps://doi.org/10.1080/07391102.2023.2233637openalex-snapshot
Identification of a potential DNA methyltransferase (DNMT) inhibitor
inferred← citeshttps://doi.org/10.1080/07391102.2023.2252898openalex-snapshot
Sirtuin 1 inhibition: a promising avenue to suppress cancer progression through small inhibitors design
inferred← citeshttps://doi.org/10.1080/07391102.2023.2297006openalex-snapshot
Exploration of comprehensive marine natural products database against dengue viral non-structural protein 1 using high-throughput computational studies
inferred← citeshttps://doi.org/10.1080/10406638.2025.2476071openalex-snapshot
Investigating the Anticancer Activity of Novel 1,2,4-Oxadiazole-Linked 1,2,3-Triazole Moieties via EGFR/pI3K/mTOR Cascade Down-Regulation
inferred← citeshttps://doi.org/10.1080/14756366.2022.2104841openalex-snapshot
Discovery of novel thiazolyl-pyrazolines as dual EGFR and VEGFR-2 inhibitors endowed with in vitro antitumor activity towards non-small lung cancer
inferred← citeshttps://doi.org/10.1080/14756366.2023.2278022openalex-snapshot
Novel N -Arylmethyl-aniline/chalcone hybrids as potential VEGFR inhibitors: synthesis, biological evaluations, and molecular dynamic simulations
inferred← citeshttps://doi.org/10.1080/14786419.2025.2487693openalex-snapshot
Antibacterial, antibiofilm activities of Jatropha gossypiifolia L. floral extracts and molecular docking study of the major compound
inferred← citeshttps://doi.org/10.1080/15226514.2025.2591223openalex-snapshot
In vitro and In silico evaluation of the antioxidant and antibacterial activities of vetiveria zizanioides irrigated with leachate from the fez landfill: GC–MS identification of bioactive compounds
inferred← citeshttps://doi.org/10.1080/16583655.2024.2350087openalex-snapshot
Innovation, structural inspection for new mixed complexes: DNA binding, biomedical applications and molecular docking approaches
inferred← citeshttps://doi.org/10.1080/17460441.2018.1516035openalex-snapshot
An update on the discovery and development of selective heat shock protein inhibitors as anti-cancer therapy
inferred← citeshttps://doi.org/10.1080/17460441.2021.1858793openalex-snapshot
The latest automated docking technologies for novel drug discovery
inferred← citeshttps://doi.org/10.1093/bib/bbac559openalex-snapshot
HCovDock: an efficient docking method for modeling covalent protein–ligand interactions
inferred← citeshttps://doi.org/10.1093/bib/bbaf697openalex-snapshot
The covalent docking software landscape: features and applications in drug design
inferred← citeshttps://doi.org/10.1093/bib/bbv037openalex-snapshot
Building a virtual ligand screening pipeline using free software: a survey
inferred← citeshttps://doi.org/10.1093/nar/gkab868openalex-snapshot
CovPDB: a high-resolution coverage of the covalent protein–ligand interactome
inferred← citeshttps://doi.org/10.1093/nar/gkx114openalex-snapshot
Inhibition of homologous phosphorolytic ribonucleases by citrate may represent an evolutionarily conserved communicative link between RNA degradation and central metabolism
inferred← citeshttps://doi.org/10.1111/bph.70377openalex-snapshot
Targeting protein–protein interactions with reversible covalent modalities: Non‐cysteine chemistries
inferred← citeshttps://doi.org/10.1111/cbdd.13734openalex-snapshot
Biological evaluation of Keggin‐type polyoxometalates on tyrosinase: Kinetics and molecular modeling
inferred← citeshttps://doi.org/10.1111/jfbc.13356openalex-snapshot
Isolation, identification, and inhibitory enzyme activity of phenolic substances present in Spirulina
inferred← citeshttps://doi.org/10.1134/s106816202403018xopenalex-snapshot
Design, Characterization, Molecular Docking, and Insecticidal Activity of Some New Heterocyclic Compounds Containing Pyrazole Moiety against Spodoptera frugiperda (J.E. Smith) (Noctuidae: Lepidoptera)
inferred← citeshttps://doi.org/10.1134/s1068162024030282openalex-snapshot
Insecticidal Evaluation, Molecular Docking, and Structure-Activity Relationship Study of Some Synthesized Thiazole-Owing Hydrazone Derivatives Against Spodoptera frugiperda under Laboratory Conditions
inferred← citeshttps://doi.org/10.1134/s1070363223110312openalex-snapshot
New Fe(III) and Ni(II) Azocoumarin Based Complexes: Synthesis, Characterization, DFT, Antimicrobial, Anti-inflammatory Activity, and Molecular Docking Analysis
inferred← citeshttps://doi.org/10.1139/cjc-2021-0121openalex-snapshot
New pyrido[3′,2′:4,5]thieno[3,2-d]pyrimidin-4(3H)-one hybrids linked to arene units: synthesis of potential MRSA, VRE, and COX-2 inhibitors
inferred← citeshttps://doi.org/10.1142/s0219633620400088openalex-snapshot
Xanthine oxidoreductase inhibition – A review of computational aspect
inferred← citeshttps://doi.org/10.1145/3711896.3736896openalex-snapshot
CovDocker: Benchmarking Covalent Drug Design with Tasks, Datasets, and Solutions
inferred← citeshttps://doi.org/10.1155/2022/5398239openalex-snapshot
In Silico Elucidation of Potent Inhibitors from Natural Products for Nonstructural Proteins of Dengue Virus
inferred← citeshttps://doi.org/10.1186/s12866-023-02756-6openalex-snapshot
Genomic landscape of the emerging XDR Salmonella Typhi for mining druggable targets clpP, hisH, folP and gpmI and screening of novel TCM inhibitors, molecular docking and simulation analyses
inferred← citeshttps://doi.org/10.1371/journal.pone.0200769openalex-snapshot
Virtual screening using covalent docking to find activators for G245S mutant p53
inferred← citeshttps://doi.org/10.1371/journal.pone.0301086openalex-snapshot
In vitro biological evaluation and in silico insights into the antiviral activity of standardized olive leaves extract against SARS-CoV-2
inferred← citeshttps://doi.org/10.1517/17460441.2016.1115478openalex-snapshot
New drug design with covalent modifiers
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3846262/v1openalex-snapshot
Exploring the biomedical potential and DNA interaction of some new mixed complexes incorporating 2-guanidinobenzimidazole and imidazole ligands supporting by DFT and molecular docking approaches
inferred← citeshttps://doi.org/10.21203/rs.3.rs-8764795/v1openalex-snapshot
Computational Identification of Phytochemical Inhibitors Targeting Head and Neck Cancer–Related Genes
inferred← citeshttps://doi.org/10.2174/0109298673293279240404080046openalex-snapshot
Novel Natural Inhibitors for Glioblastoma by Targeting Epidermal Growth Factor Receptor and Phosphoinositide 3-kinase
inferred← citeshttps://doi.org/10.2174/0109298673323284240911052131openalex-snapshot
Exploring the Therapeutic Potential of Coumarin-thiazolotriazole Pharmacophores for SARS-CoV-2 Spike Protein through In-vitro and In-silico Evaluation
inferred← citeshttps://doi.org/10.2174/0118715206387854250811103423openalex-snapshot
Targeting WWPI HECT Domain by Small Inhibitors for Restoring PTEN Tumor Suppressive Role in Glioblastoma Therapy
inferred← citeshttps://doi.org/10.2174/1386207322666190927143026openalex-snapshot
From the Explored to the Unexplored: Computer-Tailored Drug Design Attempts in the Discovery of Selective Caspase Inhibitors
inferred← citeshttps://doi.org/10.2174/1568026620666201207095626openalex-snapshot
Docking Paradigm in Drug Design
inferred← citeshttps://doi.org/10.2174/1573409919666230110112356openalex-snapshot
Identification of Small Inhibitors for Human Metadherin, an Oncoprotein, through in silico Approach
inferred← citeshttps://doi.org/10.2174/9789815136807123010008openalex-snapshot
Structural Bioinformatics and Artificial Intelligence Approaches in De Novo Drug Design
inferred← citeshttps://doi.org/10.22201/fesz.23958723e.2018.0.143openalex-snapshot
Acoplamiento Molecular: Avances Recientes y Retos
inferred← citeshttps://doi.org/10.22270/jddt.v15i9.7371openalex-snapshot
Cannabis Compounds: Docking and Dynamics Study
inferred← citeshttps://doi.org/10.25259/ajc_162_2024openalex-snapshot
Development of some 1,2,3-triazole-based complexes incorporating hydroxy and acetamide groups: Synthesis, characterization, DFT calculation, and biological screening supported by molecular docking approach
inferred← citeshttps://doi.org/10.26434/chemrxiv-2021-b3fv1-v5openalex-snapshot
Identification of Atovaquone as and Mebendazole as Repurposed Drugs with Antiviral Activity against SARS-CoV-2 (Version 5)
inferred← citeshttps://doi.org/10.26434/chemrxiv-2021-b3fv1-v6openalex-snapshot
Identification of Atovaquone and Mebendazole as Repurposed Drugs with Antiviral Activity against SARS-CoV-2 (Version 5)
inferred← citeshttps://doi.org/10.26434/chemrxiv.12003930openalex-snapshot
Identification of Atovaquone, Ouabain and Mebendazole as FDA Approved Drugs Tar-geting SARS-CoV-2 (Version 4)
inferred← citeshttps://doi.org/10.26434/chemrxiv.12003930.v4openalex-snapshot
Identification of Atovaquone, Ouabain and Mebendazole as FDA Approved Drugs Tar-geting SARS-CoV-2 (Version 4)
inferred← citeshttps://doi.org/10.26538/tjnpr/v7i6.15openalex-snapshot
Synthesis, Anti-breast Cancer Activity, and Molecular Docking Studies of Thiourea Benzamide Derivatives and Their Complexes with Copper Ion
inferred← citeshttps://doi.org/10.32604/phyton.2025.062683openalex-snapshot
GC-MS Analysis, Antimicrobial Activity, and Genotoxicity of Pimpinella anisum Essential oil: In Vitro, ADMET and Molecular Docking Investigations
inferred← citeshttps://doi.org/10.3389/fphar.2018.01089openalex-snapshot
Empirical Scoring Functions for Structure-Based Virtual Screening: Applications, Critical Aspects, and Challenges
inferred← citeshttps://doi.org/10.3389/fphar.2022.1094887openalex-snapshot
Discovery of potent and noncovalent KRASG12D inhibitors: Structure-based virtual screening and biological evaluation
inferred← citeshttps://doi.org/10.3390/antibiotics11070870openalex-snapshot
In Silico Docking, Resistance Modulation and Biofilm Gene Expression in Multidrug-Resistant Acinetobacter baumannii via Cinnamic and Gallic Acids
inferred← citeshttps://doi.org/10.3390/ijerph16060923openalex-snapshot
A Molecular Docking Approach to Evaluate the Pharmacological Properties of Natural and Synthetic Treatment Candidates for Use against Hypertension
inferred← citeshttps://doi.org/10.3390/ijms241914899openalex-snapshot
Crystal Structure of DNA Replication Protein SsbA Complexed with the Anticancer Drug 5-Fluorouracil
inferred← citeshttps://doi.org/10.3390/inorganics11080321openalex-snapshot
Synthesis of New Organoselenium-Based Succinanilic and Maleanilic Derivatives and In Silico Studies as Possible SARS-CoV-2 Main Protease Inhibitors
inferred← citeshttps://doi.org/10.3390/molecules21091170openalex-snapshot
The Search for Covalently Ligandable Proteins in Biological Systems
inferred← citeshttps://doi.org/10.3390/molecules24112183openalex-snapshot
Systematic Studies on the Protocol and Criteria for Selecting a Covalent Docking Tool
inferred← citeshttps://doi.org/10.3390/molecules28020827openalex-snapshot
Crystal Structure of Allantoinase from Escherichia coli BL21: A Molecular Insight into a Role of the Active Site Loops in Catalysis
inferred← citeshttps://doi.org/10.3390/molecules28176428openalex-snapshot
Synthesis and In Vitro Anticancer Activity of Novel 4-Aryl-3-(4-methoxyphenyl)-1-phenyl-1H-pyrazolo[3,4-b]pyridines Arrest Cell Cycle and Induce Cell Apoptosis by Inhibiting CDK2 and/or CDK9
inferred← citeshttps://doi.org/10.3390/molecules29225349openalex-snapshot
Recent Applications of In Silico Approaches for Studying Receptor Mutations Associated with Human Pathologies
inferred← citeshttps://doi.org/10.3390/ph15101262openalex-snapshot
Identification of Novel Cyanopyridones and Pyrido[2,3-d]Pyrimidines as Anticancer Agents with Dual VEGFR-2/HER-2 Inhibitory Action: Synthesis, Biological Evaluation and Molecular Docking Studies
inferred← citeshttps://doi.org/10.3390/plants11131668openalex-snapshot
Anticancer and Antioxidant Activities of the Root Extract of the Carnivorous Pitcher Plant Sarracenia purpurea
inferred← citeshttps://doi.org/10.3390/plants11172265openalex-snapshot
Cytotoxic Activities and the Allantoinase Inhibitory Effect of the Leaf Extract of the Carnivorous Pitcher Plant Nepenthes miranda
inferred← citeshttps://doi.org/10.3390/plants11223164openalex-snapshot
The Inhibitory Effects and Cytotoxic Activities of the Stem Extract of Sarracenia purpurea against Melanoma Cells and the SsbA Protein
inferred← citeshttps://doi.org/10.3390/plants11233335openalex-snapshot
Citrus reticulata Leaves Essential Oil as an Antiaging Agent: A Comparative Study between Different Cultivars and Correlation with Their Chemical Compositions
inferred← citeshttps://doi.org/10.3390/plants12112188openalex-snapshot
The Inhibitory Effects and Cytotoxic Activities of the Stem Extract of Nepenthes miranda against Single-Stranded DNA-Binding Protein and Oral Carcinoma Cells
inferred← citeshttps://doi.org/10.3390/pr9061004openalex-snapshot
Toward the Identification of Potential α-Ketoamide Covalent Inhibitors for SARS-CoV-2 Main Protease: Fragment-Based Drug Design and MM-PBSA Calculations
inferred← citeshttps://doi.org/10.3844/ojbsci.2022.256.267openalex-snapshot
Structural and Substrate Interaction Properties of Alkaline Phosphatase from Paenibacillus sp. PSB04: In-Silico Analysis
inferred← citeshttps://doi.org/10.4155/fmc-2017-0304openalex-snapshot
Covalent Simulations of Covalent/Irreversible Enzyme Inhibition in Drug Discovery: A Reliable Technical Protocol
inferred← citeshttps://doi.org/10.53964/id.2024015openalex-snapshot
Covalent Flexible Peptide Docking in Drug Discovery: Current Challenges and Potential Interventions
inferred← citeshttps://doi.org/10.56714/bjrs.51.2.3openalex-snapshot
Synthesis, Anti-Breast Cancer Activity Evaluation, and Molecular Docking Study of Cobalt(II) and Ruthenium(III) Complexes Derived from Benzoylthiourea Compounds
inferred← citeshttps://doi.org/10.6084/m9.figshare.26563174openalex-snapshot
Additional file 1 of Genomic landscape of the emerging XDR Salmonella Typhi for mining druggable targets clpP, hisH, folP and gpmI and screening of novel TCM inhibitors, molecular docking and simulation analyses
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