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Combinatorial Consensus Scoring for Ligand-Based Virtual Fragment Screening: A Comparative Case Study for Serotonin 5-HT3A, Histamine H1, and Histamine H4Receptors

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Optimization of CAMD techniques 3. Virtual screening enrichment studies: a help or hindrance in tool selection?
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What do we know and when do we know it?
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Recommendations for evaluation of computational methods
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Lessons for fragment library design: analysis of output from multiple screening campaigns
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Fragment-based drug discovery
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Navigating structure–activity landscapes
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Small and colorful stones make beautiful mosaics: fragment-based chemogenomics
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Fragment based lead discovery of small molecule inhibitors for the EPHA4 receptor tyrosine kinase
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Antiinflammatory and antinociceptive effects of the selective histamine H4-receptor antagonists JNJ7777120 and VUF6002 in a rat model of carrageenan-induced acute inflammation
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Histamine H4 receptor antagonists are superior to traditional antihistamines in the attenuation of experimental pruritus
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H4 receptor antagonism exhibits anti-nociceptive effects in inflammatory and neuropathic pain models in rats
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En route to new blockbuster anti-histamines: surveying the offspring of the expanding histamine receptor family
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Experiences in fragment-based drug discovery
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Increasing Chemical Space Coverage by Combining Empirical and Computational Fragment Screens
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Molecular Complexity and Its Impact on the Probability of Finding Leads for Drug Discovery
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Reoptimization of MDL Keys for Use in Drug Discovery
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Using Molecular Equivalence Numbers To Visually Explore Structural Features that Distinguish Chemical Libraries
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Similarity Metrics for Ligands Reflecting the Similarity of the Target Proteins
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Similarity Searching Using Reduced Graphs
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Analysis and Display of the Size Dependence of Chemical Similarity Coefficients
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Comparison of Fingerprint-Based Methods for Virtual Screening Using Multiple Bioactive Reference Structures
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Analysis of Data Fusion Methods in Virtual Screening: Similarity and Group Fusion
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The Reduced Graph Descriptor in Virtual Screening and Data-Driven Clustering of High-Throughput Screening Data
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Enhancing the Effectiveness of Virtual Screening by Fusing Nearest Neighbor Lists: A Comparison of Similarity Coefficients
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A Discussion of Measures of Enrichment in Virtual Screening: Comparing the Information Content of Descriptors with Increasing Levels of Sophistication
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The Use of Consensus Scoring in Ligand-Based Virtual Screening
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New Methods for Ligand-Based Virtual Screening: Use of Data Fusion and Machine Learning to Enhance the Effectiveness of Similarity Searching
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On Outliers and Activity CliffsWhy QSAR Often Disappoints
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Extended-Connectivity Fingerprints
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Electron Density Fingerprints (EDprints): Virtual Screening Using Assembled Information of Electron Density
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DEKOIS: Demanding Evaluation Kits for Objective in Silico Screening — A Versatile Tool for Benchmarking Docking Programs and Scoring Functions
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Virtual Screening Data Fusion Using Both Structure- and Ligand-Based Methods
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Discovery of Novel Histamine H4 and Serotonin Transporter Ligands Using the Topological Feature Tree Descriptor
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Recognizing Pitfalls in Virtual Screening: A Critical Review
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Performance Evaluation of 2D Fingerprint and 3D Shape Similarity Methods in Virtual Screening
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Similarity Coefficients for Binary Chemoinformatics Data: Overview and Extended Comparison Using Simulated and Real Data Sets
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Growth of Ligand–Target Interaction Data in ChEMBL Is Associated with Increasing and Activity Measurement-Dependent Compound Promiscuity
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Virtual Fragment Screening: Discovery of Histamine H3 Receptor Ligands Using Ligand-Based and Protein-Based Molecular Fingerprints
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Boosting Virtual Screening Enrichments with Data Fusion: Coalescing Hits from Two-Dimensional Fingerprints, Shape, and Docking
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Combination of Similarity Rankings Using Data Fusion
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Introduction of Target Cliffs as a Concept To Identify and Describe Complex Molecular Selectivity Patterns
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Complementarity between in Silico and Biophysical Screening Approaches in Fragment-Based Lead Discovery against the A2AAdenosine Receptor
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Heterogeneous Classifier Fusion for Ligand-Based Virtual Screening: Or, How Decision Making by Committee Can Be a Good Thing
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How Diverse Are Diversity Assessment Methods? A Comparative Analysis and Benchmarking of Molecular Descriptor Space
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Toward a Benchmarking Data Set Able to Evaluate Ligand- and Structure-based Virtual Screening Using Public HTS Data
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Virtual Exploration of the Chemical Universe up to 11 Atoms of C, N, O, F: Assembly of 26.4 Million Structures (110.9 Million Stereoisomers) and Analysis for New Ring Systems, Stereochemistry, Physicochemical Properties, Compound Classes, and Drug Discovery
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Fast and Efficient in Silico 3D Screening: Toward Maximum Computational Efficiency of Pharmacophore-Based and Shape-Based Approaches
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Impact of Benchmark Data Set Topology on the Validation of Virtual Screening Methods: Exploration and Quantification by Spatial Statistics
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Application of Belief Theory to Similarity Data Fusion for Use in Analog Searching and Lead Hopping
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Support-Vector-Machine-Based Ranking Significantly Improves the Effectiveness of Similarity Searching Using 2D Fingerprints and Multiple Reference Compounds
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How Similar Are Similarity Searching Methods? A Principal Component Analysis of Molecular Descriptor Space
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Maximum Unbiased Validation (MUV) Data Sets for Virtual Screening Based on PubChem Bioactivity Data
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Searching Fragment Spaces with Feature Trees
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Comparison of Ligand- and Structure-Based Virtual Screening on the DUD Data Set
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Critical Comparison of Virtual Screening Methods against the MUV Data Set
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On the Properties of Bit String-Based Measures of Chemical Similarity
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Fragment-Based Drug Discovery
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Enhancing the Effectiveness of Similarity-Based Virtual Screening Using Nearest-Neighbor Information
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Scaffold Hopping through Virtual Screening Using 2D and 3D Similarity Descriptors: Ranking, Voting, and Consensus Scoring
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Comparison of Shape-Matching and Docking as Virtual Screening Tools
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Benchmarking Sets for Molecular Docking
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Scaffold Hopping Using Two-Dimensional Fingerprints: True Potential, Black Magic, or a Hopeless Endeavor? Guidelines for Virtual Screening
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Crystal Structure-Based Virtual Screening for Fragment-like Ligands of the Human Histamine H 1 Receptor
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Histamine H4 receptor antagonism diminishes existing airway inflammation and dysfunction via modulation of Th2 cytokines
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Fragment-based lead discovery on G-protein-coupled receptors
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5-HT3 Receptor Antagonists
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FUSING SIMILARITY RANKINGS IN LIGAND-BASED VIRTUAL SCREENING

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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