On the public citation graph

Bootstrap-Based Consensus Scoring Method for Protein–Ligand Docking

https://doi.org/10.1021/ci700204v
0 signed · 55 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1096-987x(19981115)19:14<1639::aid-jcc10>3.0.co;2-bopenalex-snapshot
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
inferredcites →https://doi.org/10.1002/(sici)1097-0134(19981115)33:3<367::aid-prot6>3.0.co;2-wopenalex-snapshot
Flexible docking using tabu search and an empirical estimate of binding affinity
inferredcites →https://doi.org/10.1002/jcc.20141openalex-snapshot
Evaluation of library ranking efficacy in virtual screening
inferredcites →https://doi.org/10.1002/jcc.540150503openalex-snapshot
ICM—A new method for protein modeling and design: Applications to docking and structure prediction from the distorted native conformation
inferredcites →https://doi.org/10.1002/pro.5560040503openalex-snapshot
Structural diversity in a conserved cholera toxin epitope involved in ganglioside binding
inferredcites →https://doi.org/10.1002/prot.10429openalex-snapshot
Optimizing physical energy functions for protein folding
inferredcites →https://doi.org/10.1002/prot.20088openalex-snapshot
A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance
inferredcites →https://doi.org/10.1002/prot.20149openalex-snapshot
Comparative evaluation of eight docking tools for docking and virtual screening accuracy
inferredcites →https://doi.org/10.1002/prot.20748openalex-snapshot
SimFold energy function for de novo protein structure prediction: Consensus with Rosetta
inferredcites →https://doi.org/10.1002/prot.340210302openalex-snapshot
Funnels, pathways, and the energy landscape of protein folding: A synthesis
inferredcites →https://doi.org/10.1006/jmbi.1996.0477openalex-snapshot
A Fast Flexible Docking Method using an Incremental Construction Algorithm
inferredcites →https://doi.org/10.1006/jmbi.1996.0897openalex-snapshot
Development and validation of a genetic algorithm for flexible docking 1 1Edited by F. E. Cohen
inferredcites →https://doi.org/10.1016/0022-2836(82)90153-xopenalex-snapshot
A geometric approach to macromolecule-ligand interactions
inferredcites →https://doi.org/10.1016/j.chemphys.2004.06.015openalex-snapshot
Protein folding mechanisms and energy landscape of src SH3 domain studied by a structure prediction toolbox
inferredcites →https://doi.org/10.1016/s0969-2126(03)00075-3openalex-snapshot
De Novo Design of Foldable Proteins with Smooth Folding Funnel
inferredcites →https://doi.org/10.1016/s1074-5521(96)90093-9openalex-snapshot
Hammerhead: fast, fully automated docking of flexible ligands to protein binding sites
inferredcites →https://doi.org/10.1016/s1093-3263(01)00125-5openalex-snapshot
Consensus scoring for ligand/protein interactions
inferredcites →https://doi.org/10.1021/ci034289qopenalex-snapshot
Virtual Screening Using Protein−Ligand Docking: Avoiding Artificial Enrichment
inferredcites →https://doi.org/10.1021/ci049970mopenalex-snapshot
Assessment of Docking Poses: Interactions-Based Accuracy Classification (IBAC) versus Crystal Structure Deviations
inferredcites →https://doi.org/10.1021/ci050034wopenalex-snapshot
Consensus Scoring Criteria for Improving Enrichment in Virtual Screening
inferredcites →https://doi.org/10.1021/ci050036gopenalex-snapshot
POEM: Parameter Optimization Using Ensemble Methods: Application to Target Specific Scoring Functions
inferredcites →https://doi.org/10.1021/ci6004993openalex-snapshot
Supervised Consensus Scoring for Docking and Virtual Screening
inferredcites →https://doi.org/10.1021/ja032018qopenalex-snapshot
Structural Mining: Self-Consistent Design on Flexible Protein−Peptide Docking and Transferable Binding Affinity Potential
inferredcites →https://doi.org/10.1021/jm0003992openalex-snapshot
Detailed Analysis of Scoring Functions for Virtual Screening
inferredcites →https://doi.org/10.1021/jm001044lopenalex-snapshot
Protein-Based Virtual Screening of Chemical Databases. 1. Evaluation of Different Docking/Scoring Combinations
inferredcites →https://doi.org/10.1021/jm0203783openalex-snapshot
Comparative Evaluation of 11 Scoring Functions for Molecular Docking
inferredcites →https://doi.org/10.1021/jm020406hopenalex-snapshot
Surflex: Fully Automatic Flexible Molecular Docking Using a Molecular Similarity-Based Search Engine
inferredcites →https://doi.org/10.1021/jm0306430openalex-snapshot
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
inferredcites →https://doi.org/10.1021/jm030896topenalex-snapshot
Improving Structure-Based Virtual Screening by Multivariate Analysis of Scoring Data
inferredcites →https://doi.org/10.1021/jm050362nopenalex-snapshot
A Critical Assessment of Docking Programs and Scoring Functions
inferredcites →https://doi.org/10.1021/jm990352kopenalex-snapshot
Consensus Scoring: A Method for Obtaining Improved Hit Rates from Docking Databases of Three-Dimensional Structures into Proteins
inferredcites →https://doi.org/10.1021/jm990408aopenalex-snapshot
Successful Virtual Screening of a Chemical Database for Farnesyltransferase Inhibitor Leads
inferredcites →https://doi.org/10.1023/a:1007907728892openalex-snapshot
QXP: Powerful, rapid computer algorithms for structure-based drug design
inferredcites →https://doi.org/10.1023/a:1007999920146openalex-snapshot
Prediction of binding constants of protein ligands: A fast method for the prioritization of hits obtained from de novo design or 3D database search programs
inferredcites →https://doi.org/10.1023/a:1008005918983openalex-snapshot
MCDOCK: A Monte Carlo simulation approach to the molecular docking problem
inferredcites →https://doi.org/10.1023/a:1011115820450openalex-snapshot
DOCK 4.0: Search strategies for automated molecular docking of flexible molecule databases
inferredcites →https://doi.org/10.1023/a:1023866311551openalex-snapshot
Distilling the essential features of a protein surface for improving protein-ligand docking, scoring, and virtual screening
inferredcites →https://doi.org/10.1063/1.1472510openalex-snapshot
On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction
inferredcites →https://doi.org/10.1073/pnas.0508195103openalex-snapshot
Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study
inferredcites →https://doi.org/10.1073/pnas.181147798openalex-snapshot
Protein docking along smooth association pathways
inferredcites →https://doi.org/10.1073/pnas.95.6.2932openalex-snapshot
Self-consistently optimized energy functions for protein structure prediction by molecular dynamics
inferredcites →https://doi.org/10.1093/protein/12.8.639openalex-snapshot
Automated docking of peptides and proteins by using a genetic algorithm combined with a tabu search

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/9783527633326.ch7openalex-snapshot
The Challenge of Affinity Prediction: Scoring Functions for Structure‐Based Virtual Screening
inferred← citeshttps://doi.org/10.1002/9783527645947.ch15openalex-snapshot
Prospects of Modulating Protein–Protein Interactions
inferred← citeshttps://doi.org/10.1002/chin.200833214openalex-snapshot
ChemInform Abstract: Bootstrap‐Based Consensus Scoring Method for Protein—Ligand Docking.
inferred← citeshttps://doi.org/10.1002/jcc.21642openalex-snapshot
VoteDock: Consensus docking method for prediction of protein–ligand interactions
inferred← citeshttps://doi.org/10.1007/978-3-642-39056-2_6openalex-snapshot
Multi-Agent, Multi-Case-Based Reasoning
inferred← citeshttps://doi.org/10.1007/s10822-009-9276-1openalex-snapshot
Robust optimization of scoring functions for a target class
inferred← citeshttps://doi.org/10.1007/s10822-011-9539-5openalex-snapshot
Are predefined decoy sets of ligand poses able to quantify scoring function accuracy?
inferred← citeshttps://doi.org/10.1021/ci2002268openalex-snapshot
PLS-DA - Docking Optimized Combined Energetic Terms (PLSDA-DOCET) Protocol: A Brief Evaluation
inferred← citeshttps://doi.org/10.1109/bibm.2013.6732464openalex-snapshot
A case-based meta-learning algorithm boosts the performance of structure-based virtual screening
inferred← citeshttps://doi.org/10.1124/pr.112.007336openalex-snapshot
Computational Methods in Drug Discovery
inferred← citeshttps://doi.org/10.1371/journal.pone.0023215openalex-snapshot
Prediction of Ligand Binding Using an Approach Designed to Accommodate Diversity in Protein-Ligand Interactions
inferred← citeshttps://doi.org/10.1609/aaai.v27i2.18996openalex-snapshot
Case-Based Meta-Prediction for Bioinformatics
inferred← citeshttps://doi.org/10.2174/1570159x15666170109143757openalex-snapshot
Fusing Docking Scoring Functions Improves the Virtual Screening Performance for Discovering Parkinson's Disease Dual Target Ligands
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.