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SeleX-CS: A New Consensus Scoring Algorithm for Hit Discovery and Lead Optimization

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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1096-987x(199604)17:5/6<490::aid-jcc1>3.0.co;2-popenalex-snapshot
Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94
inferredcites →https://doi.org/10.1002/(sici)1099-1352(199911/12)12:6<371::aid-jmr479>3.0.co;2-oopenalex-snapshot
Towards understanding the mechanisms of molecular recognition by computer simulations of ligand-protein interactions
inferredcites →https://doi.org/10.1002/jcc.540040211openalex-snapshot
CHARMM : A program for macromolecular energy, minimization, and dynamics calculations
inferredcites →https://doi.org/10.1002/jcc.540110405openalex-snapshot
Macromodel—an integrated software system for modeling organic and bioorganic molecules using molecular mechanics
inferredcites →https://doi.org/10.1002/prot.20195openalex-snapshot
PREDICT modeling and in‐silico screening for G‐protein coupled receptors
inferredcites →https://doi.org/10.1002/prot.21082openalex-snapshot
Protein–ligand docking: Current status and future challenges
inferredcites →https://doi.org/10.1006/jmbi.1993.1626openalex-snapshot
Comparative Protein Modelling by Satisfaction of Spatial Restraints
inferredcites →https://doi.org/10.1006/jmbi.1996.0477openalex-snapshot
A Fast Flexible Docking Method using an Incremental Construction Algorithm
inferredcites →https://doi.org/10.1006/jmbi.1996.0897openalex-snapshot
Development and validation of a genetic algorithm for flexible docking 1 1Edited by F. E. Cohen
inferredcites →https://doi.org/10.1007/bf00124474openalex-snapshot
Scoring noncovalent protein-ligand interactions: A continuous differentiable function tuned to compute binding affinities
inferredcites →https://doi.org/10.1016/0040-4020(80)80168-2openalex-snapshot
Iterative partial equalization of orbital electronegativity—a rapid access to atomic charges
inferredcites →https://doi.org/10.1016/1074-5521(95)90050-0openalex-snapshot
Molecular recognition of the inhibitor AG-1343 by HIV-1 protease: conformationally flexible docking by evolutionary programming
inferredcites →https://doi.org/10.1016/j.jmgm.2004.11.007openalex-snapshot
LigScore: a novel scoring function for predicting binding affinities
inferredcites →https://doi.org/10.1016/s1093-3263(01)00125-5openalex-snapshot
Consensus scoring for ligand/protein interactions
inferredcites →https://doi.org/10.1016/s1093-3263(02)00164-xopenalex-snapshot
LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites
inferredcites →https://doi.org/10.1021/ci010025xopenalex-snapshot
How Does Consensus Scoring Work for Virtual Library Screening? An Idealized Computer Experiment
inferredcites →https://doi.org/10.1021/ci0342728openalex-snapshot
Impact of Scoring Functions on Enrichment in Docking-Based Virtual Screening: An Application Study on Renin Inhibitors
inferredcites →https://doi.org/10.1021/ci034289qopenalex-snapshot
Virtual Screening Using Protein−Ligand Docking: Avoiding Artificial Enrichment
inferredcites →https://doi.org/10.1021/ci050034wopenalex-snapshot
Consensus Scoring Criteria for Improving Enrichment in Virtual Screening
inferredcites →https://doi.org/10.1021/ci050283kopenalex-snapshot
Comparison of Consensus Scoring Strategies for Evaluating Computational Models of Protein−Ligand Complexes
inferredcites →https://doi.org/10.1021/ci0600758openalex-snapshot
GFscore: A General Nonlinear Consensus Scoring Function for High-Throughput Docking
inferredcites →https://doi.org/10.1021/ci700239topenalex-snapshot
Consensus Scoring with Feature Selection for Structure-Based Virtual Screening
inferredcites →https://doi.org/10.1021/ja981844+openalex-snapshot
Continuum Solvent Studies of the Stability of DNA, RNA, and Phosphoramidate−DNA Helices
inferredcites →https://doi.org/10.1021/jm0003992openalex-snapshot
Detailed Analysis of Scoring Functions for Virtual Screening
inferredcites →https://doi.org/10.1021/jm001044lopenalex-snapshot
Protein-Based Virtual Screening of Chemical Databases. 1. Evaluation of Different Docking/Scoring Combinations
inferredcites →https://doi.org/10.1021/jm0203783openalex-snapshot
Comparative Evaluation of 11 Scoring Functions for Molecular Docking
inferredcites →https://doi.org/10.1021/jm0306430openalex-snapshot
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
inferredcites →https://doi.org/10.1021/jm0508641openalex-snapshot
An Integrated in Silico 3D Model-Driven Discovery of a Novel, Potent, and Selective Amidosulfonamide 5-HT1A Agonist (PRX-00023) for the Treatment of Anxiety and Depression
inferredcites →https://doi.org/10.1021/jm980536jopenalex-snapshot
A General and Fast Scoring Function for Protein−Ligand Interactions: A Simplified Potential Approach
inferredcites →https://doi.org/10.1021/jm990352kopenalex-snapshot
Consensus Scoring: A Method for Obtaining Improved Hit Rates from Docking Databases of Three-Dimensional Structures into Proteins
inferredcites →https://doi.org/10.1023/a:1007996124545openalex-snapshot
Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
inferredcites →https://doi.org/10.1023/a:1011115820450openalex-snapshot
DOCK 4.0: Search strategies for automated molecular docking of flexible molecule databases
inferredcites →https://doi.org/10.1023/a:1020155510718openalex-snapshot
A review of protein-small molecule docking methods
inferredcites →https://doi.org/10.1023/a:1025386326946openalex-snapshot
Rational selection of training and test sets for the development of validated QSAR models
inferredcites →https://doi.org/10.1038/nature06325openalex-snapshot
Crystal structure of the human β2 adrenergic G-protein-coupled receptor
inferredcites →https://doi.org/10.1038/nature07063openalex-snapshot
Crystal structure of the ligand-free G-protein-coupled receptor opsin
inferredcites →https://doi.org/10.1038/nature07101openalex-snapshot
Structure of a β1-adrenergic G-protein-coupled receptor
inferredcites →https://doi.org/10.1038/nature07330openalex-snapshot
Crystal structure of opsin in its G-protein-interacting conformation
inferredcites →https://doi.org/10.1038/nrd2199openalex-snapshot
How many drug targets are there?
inferredcites →https://doi.org/10.1063/1.1699114openalex-snapshot
Equation of State Calculations by Fast Computing Machines
inferredcites →https://doi.org/10.1073/pnas.0401862101openalex-snapshot
G protein-coupled receptors: In silico drug discovery in 3D
inferredcites →https://doi.org/10.1093/nar/28.1.235openalex-snapshot
The Protein Data Bank
inferredcites →https://doi.org/10.1110/ps.9.9.1753openalex-snapshot
Modeling of loops in protein structures
inferredcites →https://doi.org/10.1126/science.289.5480.733openalex-snapshot
Rhodopsin Sees the Light
inferredcites →https://doi.org/10.1126/science.289.5480.739openalex-snapshot
Crystal Structure of Rhodopsin: A G Protein-Coupled Receptor
inferredcites →https://doi.org/10.1146/annurev.biophys.29.1.291openalex-snapshot
Comparative Protein Structure Modeling of Genes and Genomes
inferredcites →https://doi.org/10.2307/1412107openalex-snapshot
"General Intelligence," Objectively Determined and Measured

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/0471266949.bmc301openalex-snapshot
Docking, Scoring, and Virtual Screening in Drug Discovery
inferred← citeshttps://doi.org/10.1002/9783527633326.ch7openalex-snapshot
The Challenge of Affinity Prediction: Scoring Functions for Structure‐Based Virtual Screening
inferred← citeshttps://doi.org/10.1002/9783527645947.ch15openalex-snapshot
Prospects of Modulating Protein–Protein Interactions
inferred← citeshttps://doi.org/10.1002/jcc.21642openalex-snapshot
VoteDock: Consensus docking method for prediction of protein–ligand interactions
inferred← citeshttps://doi.org/10.1002/jcc.21643openalex-snapshot
Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database
inferred← citeshttps://doi.org/10.1002/jmr.1077openalex-snapshot
Challenges and advances in computational docking: 2009 in review
inferred← citeshttps://doi.org/10.1007/978-981-16-5180-9_16openalex-snapshot
Computer Aided Drug Design
inferred← citeshttps://doi.org/10.1007/s10822-010-9390-0openalex-snapshot
Small molecule correctors of F508del-CFTR discovered by structure-based virtual screening
inferred← citeshttps://doi.org/10.1007/s10822-011-9539-5openalex-snapshot
Are predefined decoy sets of ligand poses able to quantify scoring function accuracy?
inferred← citeshttps://doi.org/10.1007/s12539-019-00327-wopenalex-snapshot
An Overview of Scoring Functions Used for Protein–Ligand Interactions in Molecular Docking
inferred← citeshttps://doi.org/10.1016/b978-0-323-90264-9.00024-6openalex-snapshot
Advances in structure-based virtual screening for drug discovery
inferred← citeshttps://doi.org/10.1016/b978-0-443-15280-1.00011-xopenalex-snapshot
Principles of computational drug designing and drug repurposing—An algorithmic approach
inferred← citeshttps://doi.org/10.1016/j.nbt.2011.11.017openalex-snapshot
Advances in binder identification and characterisation: the case of oligonucleotide aptamers
inferred← citeshttps://doi.org/10.1016/j.snb.2016.11.041openalex-snapshot
A novel electrochemical aptasensor based on f-MWCNTs/AuNPs nanocomposite for label-free detection of bisphenol A
inferred← citeshttps://doi.org/10.1021/ac202559wopenalex-snapshot
Sol–Gel Derived Nanoporous Compositions for Entrapping Small Molecules and Their Outlook toward Aptamer Screening
inferred← citeshttps://doi.org/10.1021/acs.jcim.5b00279openalex-snapshot
Application of Shape Similarity in Pose Selection and Virtual Screening in CSARdock2014 Exercise
inferred← citeshttps://doi.org/10.1021/acs.jcim.8b00329openalex-snapshot
Novel Consensus Docking Strategy to Improve Ligand Pose Prediction
inferred← citeshttps://doi.org/10.1021/ci200269qopenalex-snapshot
CSAR Benchmark Exercise of 2010: Combined Evaluation Across All Submitted Scoring Functions
inferred← citeshttps://doi.org/10.1021/ci200472sopenalex-snapshot
Improving Classical Substructure-Based Virtual Screening to Handle Extrapolation Challenges
inferred← citeshttps://doi.org/10.1021/ci8004308openalex-snapshot
Docking Ligands into Flexible and Solvated Macromolecules. 4. Are Popular Scoring Functions Accurate for this Class of Proteins?
inferred← citeshttps://doi.org/10.1038/s41598-025-08911-5openalex-snapshot
Electrochemical aptasensing of dopamine using a gold digital video disc platform modified with graphitic carbon nitride capped SiO2@Au core-shell nanoparticles
inferred← citeshttps://doi.org/10.1038/srep40053openalex-snapshot
Prediction of N-Methyl-D-Aspartate Receptor GluN1-Ligand Binding Affinity by a Novel SVM-Pose/SVM-Score Combinatorial Ensemble Docking Scheme
inferred← citeshttps://doi.org/10.1039/c0cp00151aopenalex-snapshot
Scoring functions and their evaluation methods for protein–ligand docking: recent advances and future directions
inferred← citeshttps://doi.org/10.1055/s-0034-1396314openalex-snapshot
How to Valorize Biodiversity? Letʼs Go Hashing, Extracting, Filtering, Mining, Fishing
inferred← citeshttps://doi.org/10.1063/1.5133601openalex-snapshot
Survey of the scoring functions for protein-ligand docking
inferred← citeshttps://doi.org/10.1111/j.1747-0285.2012.01416.xopenalex-snapshot
Novel Cruzain Inhibitors for the Treatment of Chagas’ Disease
inferred← citeshttps://doi.org/10.1124/pr.112.007336openalex-snapshot
Computational Methods in Drug Discovery
inferred← citeshttps://doi.org/10.1142/s0219720021500037openalex-snapshot
An evaluation of combined strategies for improving the performance of molecular docking
inferred← citeshttps://doi.org/10.1149/1945-7111/ad2816openalex-snapshot
Review—Aptasensors: Cutting-Edge Technologies for Bisphenol A Detection as an Endocrine Disruptor
inferred← citeshttps://doi.org/10.17586/2226-1494-2026-26-4-683-694openalex-snapshot
Scoring functions of protein molecular docking models in automated systems for processing and analyzing bioinformatics data
inferred← citeshttps://doi.org/10.2174/1570159x15666170109143757openalex-snapshot
Fusing Docking Scoring Functions Improves the Virtual Screening Performance for Discovering Parkinson's Disease Dual Target Ligands
inferred← citeshttps://doi.org/10.3389/fphar.2018.01089openalex-snapshot
Empirical Scoring Functions for Structure-Based Virtual Screening: Applications, Critical Aspects, and Challenges
inferred← citeshttps://doi.org/10.3390/molecules200713384openalex-snapshot
Molecular Docking and Structure-Based Drug Design Strategies
inferred← citeshttps://doi.org/10.4018/978-1-5225-0115-2.ch009openalex-snapshot
Scoring Functions of Protein-Ligand Interactions
inferred← citeshttps://doi.org/10.4018/978-1-5225-0549-5.ch036openalex-snapshot
Scoring Functions of Protein-Ligand Interactions
inferred← citeshttps://doi.org/10.70675/d579a173zeee9z409fzaf5ez64ae20859f75openalex-snapshot
Computational fragment-based design of chemically modified oligonucleotides for selective protein inhibition : BACE1 as a case study
inferred← citeshttps://doi.org/10.70675/f0567b86z4fdfz4cc8zb716z49ec4d7b8548openalex-snapshot
Développements HPC pour une nouvelle méthode de docking inverse : applications aux protéines matricielles.
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