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Consistent Improvement of Cross-Docking Results Using Binding Site Ensembles Generated with Elastic Network Normal Modes

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Outgoing claims: the papers this work cites, builds on, or argues with.

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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins
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Understanding the challenges of protein flexibility in drug design
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Tackling the challenges posed by target flexibility in drug design
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Virtual Screening Strategies: A State of Art to Combat with Multiple Drug Resistance Strains
inferred← citeshttps://doi.org/10.2174/0929867311320180002openalex-snapshot
Protein-Ligand Docking in the New Millennium – A Retrospective of 10 Years in the Field
inferred← citeshttps://doi.org/10.2174/156802610790232314openalex-snapshot
Template-Based Protein Modeling: Recent Methodological Advances
inferred← citeshttps://doi.org/10.2174/156802611794863544openalex-snapshot
Accounting for Induced-Fit Effects in Docking: What is Possible and What is Not?
inferred← citeshttps://doi.org/10.2174/156802612804547335openalex-snapshot
Compound Activity Prediction Using Models of Binding Pockets or Ligand Properties in 3D
inferred← citeshttps://doi.org/10.2174/1568026614666140929153812openalex-snapshot
Recent Advances in Computer-Aided Drug Design as Applied to Anti-Influenza Drug Discovery
inferred← citeshttps://doi.org/10.2174/157340909789577856openalex-snapshot
Modeling Reality for Optimal Docking of Small Molecules to Biological Targets
inferred← citeshttps://doi.org/10.2174/978160805142711101010099openalex-snapshot
Receptor Flexibility in Ligand Docking and Virtual Screening
inferred← citeshttps://doi.org/10.2741/3854openalex-snapshot
Protein-ligand docking
inferred← citeshttps://doi.org/10.32657/10220/48075openalex-snapshot
Progesterone receptor ligand binding domain : from conformational dynamics to drug discovery
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Comparative In-Silico Molecular Docking of Silymarin for SARS-CoV-2 Receptor
inferred← citeshttps://doi.org/10.3390/chemistry4030067openalex-snapshot
Natural Products as Mcl-1 Inhibitors: A Comparative Study of Experimental and Computational Modelling Data
inferred← citeshttps://doi.org/10.3390/ijms11103623openalex-snapshot
SwarmDock and the Use of Normal Modes in Protein-Protein Docking
inferred← citeshttps://doi.org/10.3390/ijms27073302openalex-snapshot
Open-Source Molecular Docking and AI-Augmented Structure-Based Drug Design: Current Workflows, Challenges, and Opportunities
inferred← citeshttps://doi.org/10.3390/vaccines10010024openalex-snapshot
Multi-Targeted Approaches and Drug Repurposing Reveal Possible SARS-CoV-2 Inhibitors
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New Computational Methods to Calculate Drug-Receptor Binding Free Energies
inferred← citeshttps://doi.org/10.4018/978-1-5225-0115-2.ch001openalex-snapshot
Molecular Docking at a Glance
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Molecular Docking at a Glance
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Recent Trends and Observations in the Design of High-Quality Screening Collections
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Docking to Multiple Pockets or Ligand Fields for Screening, Activity Prediction and Scaffold Hopping
inferred← citeshttps://doi.org/10.4155/fmc.15.150openalex-snapshot
Sampling of Conformational Ensemble for Virtual Screening Using Molecular Dynamics Simulations and Normal Mode Analysis
inferred← citeshttps://doi.org/10.6092/unibo/amsdottorato/6330openalex-snapshot
Computational strategies to include protein flexibility in Ligand Docking and Virtual Screening
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