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Docking and 3D-QSAR Studies on Isatin Sulfonamide Analogues as Caspase-3 Inhibitors

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Conformational restrictions in the active site of unliganded human caspase‐3
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Applied Statistics
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Synthesis, radiolabeling, and in vivo evaluation of an 18F-labeled isatin analog for imaging caspase-3 activation in apoptosis
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A Novel nonpeptidic caspase-3/7 inhibitor, (S)-(+)-5-[1-(2-methoxymethylpyrrolidinyl)sulfonyl]isatin reduces myocardial ischemic injury
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Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation
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Programmed Cell Death in Animal Development
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Beware of q2!
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Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
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Molecular Similarity Indices in a Comparative Analysis (CoMSIA) of Drug Molecules to Correlate and Predict Their Biological Activity
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Potent and Selective Nonpeptide Inhibitors of Caspases 3 and 7
inferredcites →https://doi.org/10.1021/jm030209yopenalex-snapshot
Lessons in Molecular Recognition: The Effects of Ligand and Protein Flexibility on Molecular Docking Accuracy
inferredcites →https://doi.org/10.1021/jm0305523openalex-snapshot
Reducing the Peptidyl Features of Caspase-3 Inhibitors: A Structural Analysis
inferredcites →https://doi.org/10.1021/jm0506625openalex-snapshot
N-Benzylisatin Sulfonamide Analogues as Potent Caspase-3 Inhibitors: Synthesis, in Vitro Activity, and Molecular Modeling Studies
inferredcites →https://doi.org/10.1021/jm070506topenalex-snapshot
Isatin Sulfonamide Analogs Containing a Michael Addition Acceptor: A New Class of Caspase 3/7 Inhibitors
inferredcites →https://doi.org/10.1021/jm900135ropenalex-snapshot
Synthesis and in Vitro Evaluation of Sulfonamide Isatin Michael Acceptors as Small Molecule Inhibitors of Caspase-6
inferredcites →https://doi.org/10.1021/jm9708442openalex-snapshot
Three-Dimensional Quantitative Structure−Activity Relationship of Interleukin 1-β Converting Enzyme Inhibitors: A Comparative Molecular Field Analysis Study
inferredcites →https://doi.org/10.1023/a:1025386326946openalex-snapshot
Rational selection of training and test sets for the development of validated QSAR models
inferredcites →https://doi.org/10.1038/82741openalex-snapshot
Caspase inhibitors improve survival in sepsis: a critical role of the lymphocyte
inferredcites →https://doi.org/10.1038/nrd726openalex-snapshot
Apoptosis-based therapies
inferredcites →https://doi.org/10.1038/sj.cdd.4400476openalex-snapshot
Emerging roles of caspase-3 in apoptosis
inferredcites →https://doi.org/10.1042/bj20041142openalex-snapshot
The protein structures that shape caspase activity, specificity, activation and inhibition
inferredcites →https://doi.org/10.1074/jbc.273.49.32608openalex-snapshot
Inhibition of Human Caspases by Peptide-based and Macromolecular Inhibitors
inferredcites →https://doi.org/10.1074/jbc.275.21.16007openalex-snapshot
Potent and Selective Nonpeptide Inhibitors of Caspases 3 and 7 Inhibit Apoptosis and Maintain Cell Functionality
inferredcites →https://doi.org/10.1093/nar/28.1.235openalex-snapshot
The Protein Data Bank
inferredcites →https://doi.org/10.1093/protein/8.2.127openalex-snapshot
LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions
inferredcites →https://doi.org/10.1126/science.7878464openalex-snapshot
Apoptosis in the Pathogenesis and Treatment of Disease
inferredcites →https://doi.org/10.2174/092986707781058814openalex-snapshot
Whither Combine? New Opportunities for Receptor-Based QSAR
inferredcites →https://doi.org/10.2174/092986707781745569openalex-snapshot
Apoptosis: Potential Therapeutic Targets for New Drug Discovery
inferredcites →https://doi.org/10.2174/092986708783330647openalex-snapshot
Innovative Strategies in In Vivo Apoptosis Imaging
inferredcites →https://doi.org/10.2174/138161206779010431openalex-snapshot
Development of Quantitative Structure-Activity Relationships and Its Application in Rational Drug Design
inferredcites →https://doi.org/10.2174/138161207782794257openalex-snapshot
Predictive QSAR Modeling Workflow, Model Applicability Domains, and Virtual Screening

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/jccs.201800262openalex-snapshot
Quantitative structure–activity relationship study using genetic algorithm–enhanced replacement method combined with molecular docking studies of isatin derivatives as inhibitors of human transglutaminase 2
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Insight into the structural requirements of benzimidazole derivatives as interleukin‐2 inducible t‐cell kinase inhibitors by computational explorations
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Molecular modeling and protection against pentylenetetrazole-induced seizure of new 1,4-dihydropyridines containing 5(4)-imidazolyl substituent
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Probing the structural requirements for thyroid hormone receptor inhibitory activity of sulfonylnitrophenylthiazoles (SNPTs) using 2D-QSAR and 3D-QSAR approaches
inferred← citeshttps://doi.org/10.1016/j.bbrc.2014.07.053openalex-snapshot
5-(2-Carboxyethenyl) isatin derivative induces G2/M cell cycle arrest and apoptosis in human leukemia K562 cells
inferred← citeshttps://doi.org/10.1016/j.bmc.2012.03.041openalex-snapshot
New description of protein–ligand interactions using a spherical self-organizing map
inferred← citeshttps://doi.org/10.1016/j.bmc.2013.01.011openalex-snapshot
Synthesis of new fluorinated, 2-substituted 5-pyrrolidinylsulfonyl isatin derivatives as caspase-3 and caspase-7 inhibitors: Nonradioactive counterparts of putative PET-compatible apoptosis imaging agents
inferred← citeshttps://doi.org/10.1016/j.bmcl.2011.03.015openalex-snapshot
Synthesis and evaluation of isatin analogs as caspase-3 inhibitors: Introduction of a hydrophilic group increases potency in a whole cell assay
inferred← citeshttps://doi.org/10.1016/j.bmcl.2013.12.001openalex-snapshot
Design, synthesis and in vitro cytotoxicity evaluation of 5-(2-carboxyethenyl)isatin derivatives as anticancer agents
inferred← citeshttps://doi.org/10.1016/j.bmcl.2014.05.044openalex-snapshot
Rational design of the first difluorostatone-based PfSUB1 inhibitors
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Protective effect of novel substituted nicotine hydrazide analogues against hypoxic brain injury in neonatal rats via inhibition of caspase
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Multi-level structure-based pharmacophore modelling of caspase-3-non-peptide complexes: Extracting essential pharmacophore features and its application to virtual screening
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2017.08.006openalex-snapshot
Molecular dynamics-assisted pharmacophore modeling of caspase-3-isatin sulfonamide complex: Recognizing essential intermolecular contacts and features of sulfonamide inhibitor class for caspase-3 binding
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Synthesis and anti-cancer activity evaluation of 5-(2-carboxyethenyl)-isatin derivatives
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Exploring the structure determinants of pyrazinone derivatives as PDE5 3HC8 inhibitors: An in silico analysis
inferred← citeshttps://doi.org/10.1016/j.molstruc.2020.128377openalex-snapshot
Structural analysis, simulation, and molecular docking of aza-nitrile into cathepsins to explain the high selectivity
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Allosteric modulation of caspases
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Small Molecule Active Site Directed Tools for Studying Human Caspases
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Understanding the Molecular Determinant of Reversible Human Monoamine Oxidase B Inhibitors Containing 2H-Chromen-2-One Core: Structure-Based and Ligand-Based Derived Three-Dimensional Quantitative Structure–Activity Relationships Predictive Models
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Three-Dimensional Analysis of Binding Sites for Predicting Binding Affinities in Drug Design
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.1c00172openalex-snapshot
Covalent Small Molecule Immunomodulators Targeting the Protease Active Site
inferred← citeshttps://doi.org/10.1021/jm500718eopenalex-snapshot
Synthesis of 7-Halogenated Isatin Sulfonamides: Nonradioactive Counterparts of Caspase-3/-7 Inhibitor-Based Potential Radiopharmaceuticals for Molecular Imaging of Apoptosis
inferred← citeshttps://doi.org/10.1039/c2md20249bopenalex-snapshot
A new class of fluorinated 5-pyrrolidinylsulfonyl isatin caspase inhibitors for PET imaging of apoptosis
inferred← citeshttps://doi.org/10.1039/c2ob26624eopenalex-snapshot
Highly selective azadipeptide nitrile inhibitors for cathepsin K: design, synthesis and activity assays
inferred← citeshttps://doi.org/10.1039/c6md00228eopenalex-snapshot
Design, synthesis, biological evaluation and docking studies of sulfonyl isatin derivatives as monoamine oxidase and caspase-3 inhibitors
inferred← citeshttps://doi.org/10.1080/1062936x.2021.1971760openalex-snapshot
Combined 4D-QSAR and target-based approaches for the determination of bioactive Isatin derivatives
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Design and synthesis of new curcumin analogues as hepatoprotectives and antioxidants in liver dysfunction through caspase-3 regulation
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From the Explored to the Unexplored: Computer-Tailored Drug Design Attempts in the Discovery of Selective Caspase Inhibitors
inferred← citeshttps://doi.org/10.2174/1570180819666220915101829openalex-snapshot
Docking Study on Caspase 3 Inhibitors As Potential Drugs For Traumatic Brain Cell Apoptosis
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Compressed images for affinity prediction-2 (CIFAP-2): an improved machine learning methodology on protein–ligand interactions based on a study on caspase 3 inhibitors
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Machine Learning From Molecular Dynamics Trajectories to Predict Caspase-8 Inhibitors Against Alzheimer’s Disease
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Structural Requirements of N-Substituted Spiropiperidine Analogues as Agonists of Nociceptin/Orphanin FQ Receptor
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Theory and Applications of Covalent Docking in Drug Discovery: Merits and Pitfalls
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Mechanism Exploration of Arylpiperazine Derivatives Targeting the 5-HT2A Receptor by In Silico Methods
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Computational Chemistry for the Identification of Lead Compounds for Radiotracer Development
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Isatin Sulfonamides: Potent Caspases-3 and -7 Inhibitors, and Promising PET and SPECT Radiotracers for Apoptosis Imaging
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Atom Coloring for Chemical Interpretation and De Novo Design for Molecular Design
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