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SATIS: Atom Typing from Chemical Connectivity
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/jcc.540040211openalex-snapshot
CHARMM : A program for macromolecular energy, minimization, and dynamics calculations
inferredcites →https://doi.org/10.1002/jcc.540070216openalex-snapshot
An all atom force field for simulations of proteins and nucleic acids
inferredcites →https://doi.org/10.1006/jmbi.1996.0311openalex-snapshot
X-SITE: Use of Empirically Derived Atomic Packing Preferences to Identify Favourable Interaction Regions in the Binding Sites of Proteins
inferredcites →https://doi.org/10.1006/jmbi.1996.0868openalex-snapshot
Novel knowledge-based mean force potential at atomic level
inferredcites →https://doi.org/10.1016/s0022-2836(77)80200-3openalex-snapshot
The protein data bank: A computer-based archival file for macromolecular structures
inferredcites →https://doi.org/10.1017/cbo9780511693632.005openalex-snapshot
Department of Biochemistry
inferredcites →https://doi.org/10.1021/ci9603487openalex-snapshot
BALI: Automatic Assignment of Bond and Atom Types for Protein Ligands in the Brookhaven Protein Databank
inferredcites →https://doi.org/10.1021/ja00168a043openalex-snapshot
A transferable distributed multipole model for the electrostatic interactions of peptides and amides
inferredcites →https://doi.org/10.1021/ja00168a044openalex-snapshot
Local structure in ribonuclease A. Effect of amino acid substitutions on the preferential formation of the native disulfide loop in synthetic peptides corresponding to residues Cys58-Cys72 of bovine pancreatic ribonuclease A
inferredcites →https://doi.org/10.1021/ja00315a052openalex-snapshot
Biosynthetic origin of the carbon skeleton and oxygen atoms of nargenicin A1
inferredcites →https://doi.org/10.1023/a:1007934413448openalex-snapshot
IsoStar: A library of information about nonbonded interactions
inferredcites →https://doi.org/10.1093/protein/8.2.127openalex-snapshot
LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions
inferredcites →https://doi.org/10.1107/s0108767391002295openalex-snapshot
The phase problem and its relation to the spin-glass problem
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/1097-0134(20001001)41:1<47::aid-prot80>3.0.co;2-8openalex-snapshot
Discriminating between homodimeric and monomeric proteins in the crystalline state
inferred← citeshttps://doi.org/10.1002/1097-0134(20001001)41:1<47::aid-prot80>3.3.co;2-#openalex-snapshot
Discriminating between homodimeric and monomeric proteins in the crystalline state
inferred← citeshttps://doi.org/10.1002/jcc.1036openalex-snapshot
Evaluation of a knowledge‐based potential of mean force for scoring docked protein–ligand complexes
inferred← citeshttps://doi.org/10.1002/jcc.21359openalex-snapshot
Aten—An application for the creation, editing, and visualization of coordinates for glasses, liquids, crystals, and molecules
inferred← citeshttps://doi.org/10.1002/prot.21502openalex-snapshot
Integrating statistical pair potentials into protein complex prediction
inferred← citeshttps://doi.org/10.1002/qsar.200430926openalex-snapshot
Knowledge Based Potentials: the Reverse Boltzmann Methodology, Virtual Screening and Molecular Weight Dependence
inferred← citeshttps://doi.org/10.1088/1674-1056/27/2/020503openalex-snapshot
Optimizing the atom types of proteins through iterative knowledge-based potentials
inferred← citeshttps://doi.org/10.1107/s0021889803012421openalex-snapshot
Automatic inference of protein quaternary structure from crystals
inferred← citeshttps://doi.org/10.1107/s0108768103019025openalex-snapshot
Can we predict lattice energy from molecular structure?
inferred← citeshttps://doi.org/10.1186/1472-6807-7-54openalex-snapshot
Computational modeling of protein mutant stability: analysis and optimization of statistical potentials and structural features reveal insights into prediction model development
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