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Nucleic Acid Catalysis: Metals, Nucleobases, and Other Cofactors
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Outgoing claims: the papers this work cites, builds on, or argues with.
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The Conservation of Orbital Symmetry
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DNA as a Versatile Chemical Component for Catalysis, Encoding, and Stereocontrol
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Characterization of the Reaction Path and Transition States for RNA Transphosphorylation Models from Theory and Experiment
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Molecular dynamics simulations of RNA: An in silico single molecule approach
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Importance of RNA‐protein interactions in bacterial ribonuclease P structure and catalysis
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Genetic Control by Metabolite‐Binding Riboswitches
inferredcites →https://doi.org/10.1002/cbic.200600459openalex-snapshot
Solution Structure of Domain 6 from a Self‐Splicing Group II Intron Ribozyme: A Mg2+ Binding Site is Located Close to the Stacked Branch Adenosine
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Group II Intron Ribozymes and Metal Ions – A Delicate Relationship
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Efficient trans‐cleavage of a stem‐loop RNA substrate by a ribozyme derived from neurospora VS RNA.
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A long‐range pseudoknot is required for activity of the Neurospora VS ribozyme.
inferredcites →https://doi.org/10.1006/jmbi.1998.2049openalex-snapshot
Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme 1 1Edited by D. Draper
inferredcites →https://doi.org/10.1006/jmbi.1999.2890openalex-snapshot
Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis
inferredcites →https://doi.org/10.1006/jmbi.2000.3560openalex-snapshot
Structure and function of the hairpin ribozyme
inferredcites →https://doi.org/10.1006/jmbi.2000.3655openalex-snapshot
Effects of phosphorothioate modifications on precursor tRNA processing by eukaryotic RNase P enzymes
inferredcites →https://doi.org/10.1007/978-1-4614-4954-6_8openalex-snapshot
An Integrated Picture of HDV Ribozyme Catalysis
inferredcites →https://doi.org/10.1007/978-3-642-27426-8_3openalex-snapshot
Thio Effects as a Tool for Mechanistic Studies of the Cleavage of RNA Phosphodiester Bonds: The Chemical Basis
inferredcites →https://doi.org/10.1007/978-94-007-2172-2_8openalex-snapshot
Metal Ion-Dependent DNAzymes and Their Applications as Biosensors
inferredcites →https://doi.org/10.1016/0092-8674(82)90414-7openalex-snapshot
Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena
inferredcites →https://doi.org/10.1016/0092-8674(83)90117-4openalex-snapshot
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
inferredcites →https://doi.org/10.1016/1074-5521(94)90014-0openalex-snapshot
A DNA enzyme that cleaves RNA
inferredcites →https://doi.org/10.1016/b0-08-043748-6/08167-6openalex-snapshot
DNA and RNA as Ligands
inferredcites →https://doi.org/10.1016/j.biochi.2007.05.009openalex-snapshot
RNase P RNA mediated cleavage: Substrate recognition and catalysis
inferredcites →https://doi.org/10.1016/j.cbpa.2008.10.010openalex-snapshot
A repulsive field: advances in the electrostatics of the ion atmosphere
inferredcites →https://doi.org/10.1016/j.cbpa.2009.11.024openalex-snapshot
Controlling ribozyme activity by metal ions
inferredcites →https://doi.org/10.1016/j.ccr.2007.03.008openalex-snapshot
From nucleotides to ribozymes—A comparison of their metal ion binding properties
inferredcites →https://doi.org/10.1016/j.cell.2006.06.036openalex-snapshot
Tertiary Contacts Distant from the Active Site Prime a Ribozyme for Catalysis
inferredcites →https://doi.org/10.1016/j.cell.2008.09.013openalex-snapshot
RNase P without RNA: Identification and Functional Reconstitution of the Human Mitochondrial tRNA Processing Enzyme
inferredcites →https://doi.org/10.1016/j.cell.2012.09.033openalex-snapshot
Visualizing Group II Intron Catalysis through the Stages of Splicing
inferredcites →https://doi.org/10.1016/j.chembiol.2004.06.011openalex-snapshot
Architecture of a Diels-Alderase Ribozyme with a Preformed Catalytic Pocket
inferredcites →https://doi.org/10.1016/j.chembiol.2005.09.006openalex-snapshot
Ligand Requirements for glmS Ribozyme Self-Cleavage
inferredcites →https://doi.org/10.1016/j.chembiol.2006.12.005openalex-snapshot
Structural Investigation of the GlmS Ribozyme Bound to Its Catalytic Cofactor
inferredcites →https://doi.org/10.1016/j.chembiol.2007.05.008openalex-snapshot
A Second Divalent Metal Ion in the Group II Intron Reaction Center
inferredcites →https://doi.org/10.1016/j.chembiol.2008.03.010openalex-snapshot
Solvent Structure and Hammerhead Ribozyme Catalysis
inferredcites →https://doi.org/10.1016/j.chembiol.2009.01.008openalex-snapshot
Biologically Inspired Synthetic Enzymes Made from DNA
inferredcites →https://doi.org/10.1016/j.jmb.2005.04.005openalex-snapshot
Role of an Active Site Adenine in Hairpin Ribozyme Catalysis
inferredcites →https://doi.org/10.1016/j.jmb.2007.06.026openalex-snapshot
Structural Metals in the Group I Intron: A Ribozyme with a Multiple Metal Ion Core
inferredcites →https://doi.org/10.1016/j.molcel.2004.10.003openalex-snapshot
Structure of the Tetrahymena Ribozyme
inferredcites →https://doi.org/10.1016/j.sbi.2005.05.007openalex-snapshot
Structure and assembly of group I introns
inferredcites →https://doi.org/10.1016/j.sbi.2006.04.005openalex-snapshot
RNA splicing: group I intron crystal structures reveal the basis of splice site selection and metal ion catalysis
inferredcites →https://doi.org/10.1016/j.sbi.2012.06.003openalex-snapshot
Squaring theory with practice in RNA design
inferredcites →https://doi.org/10.1016/j.tibs.2006.11.007openalex-snapshot
How ribosomes make peptide bonds
inferredcites →https://doi.org/10.1016/j.tig.2004.12.007openalex-snapshot
The natural history of group I introns
inferredcites →https://doi.org/10.1016/j.ymeth.2009.07.005openalex-snapshot
Identification of catalytic metal ion ligands in ribozymes
inferredcites →https://doi.org/10.1016/s0022-2836(02)00910-5openalex-snapshot
Functional Group Requirements in the Probable Active Site of the VS Ribozyme
inferredcites →https://doi.org/10.1016/s0076-6879(09)68016-2openalex-snapshot
EPR Methods to Study Specific Metal-Ion Binding Sites in RNA
inferredcites →https://doi.org/10.1016/s0092-8674(02)01134-0openalex-snapshot
Sensing Small Molecules by Nascent RNA
inferredcites →https://doi.org/10.1016/s0162-0134(00)00079-9openalex-snapshot
Activities and relative affinities of divalent metals in unmodified and phosphorothioate-substituted hammerhead ribozymes
inferredcites →https://doi.org/10.1016/s0959-440x(00)00208-6openalex-snapshot
Artificial ribozymes and deoxyribozymes
inferredcites →https://doi.org/10.1016/s1074-5521(02)00217-xopenalex-snapshot
Two Decades of RNA Catalysis
inferredcites →https://doi.org/10.1016/s1074-5521(96)90170-2openalex-snapshot
In vitro selection of self-cleaving DNAs
inferredcites →https://doi.org/10.1016/s1074-5521(98)90006-0openalex-snapshot
DNA-enhanced peroxidase activity of a DNA aptamer-hemin complex
inferredcites →https://doi.org/10.1016/s1074-5521(99)89008-5openalex-snapshot
A small catalytic RNA motif with Diels-Alderase activity
inferredcites →https://doi.org/10.1017/s1355838200991465openalex-snapshot
Chloroplast ribonuclease P does not utilize the ribozyme-type pre-tRNA cleavage mechanism
inferredcites →https://doi.org/10.1017/s1355838200991477openalex-snapshot
Evidence for an RNA-based catalytic mechanism in eukaryotic nuclear ribonuclease P
inferredcites →https://doi.org/10.1017/s1355838200992069openalex-snapshot
Metal ion catalysis during the exon-ligation step of nuclear pre-mRNA splicing: Extending the parallels between the spliceosome and group II introns
inferredcites →https://doi.org/10.1017/s1355838201002461openalex-snapshot
Comparison of the hammerhead cleavage reactions stimulated by monovalent and divalent cations
inferredcites →https://doi.org/10.1021/ar2000452openalex-snapshot
Charged Nucleobases and Their Potential for RNA Catalysis
inferredcites →https://doi.org/10.1021/ar200098topenalex-snapshot
The Molecular Interactions That Stabilize RNA Tertiary Structure: RNA Motifs, Patterns, and Networks
inferredcites →https://doi.org/10.1021/ar200131topenalex-snapshot
Synthesis, Properties, and Applications of Oligonucleotides Containing an RNA Dinucleotide Phosphorothiolate Linkage
inferredcites →https://doi.org/10.1021/bi00003a024openalex-snapshot
Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P
inferredcites →https://doi.org/10.1021/bi00071a001openalex-snapshot
Multiple magnesium ions in the ribonuclease P reaction mechanism
inferredcites →https://doi.org/10.1021/bi001089oopenalex-snapshot
Kinetic Characterization of the Second Step of Group II Intron Splicing: Role of Metal Ions and the Cleavage Site 2‘-OH in Catalysis
inferredcites →https://doi.org/10.1021/bi011253nopenalex-snapshot
Mechanistic Characterization of the HDV Genomic Ribozyme: Assessing the Catalytic and Structural Contributions of Divalent Metal Ions within a Multichannel Reaction Mechanism
inferredcites →https://doi.org/10.1021/bi027332wopenalex-snapshot
A Lead-Dependent DNAzyme with a Two-Step Mechanism
inferredcites →https://doi.org/10.1021/bi049188fopenalex-snapshot
Analysis of Solvent Nucleophile Isotope Effects: Evidence for Concerted Mechanisms and Nucleophilic Activation by Metal Coordination in Nonenzymatic and Ribozyme-Catalyzed Phosphodiester Hydrolysis
inferredcites →https://doi.org/10.1021/bi060337zopenalex-snapshot
Evidence for Preorganization of the glmS Ribozyme Ligand Binding Pocket
inferredcites →https://doi.org/10.1021/bi100670popenalex-snapshot
A 1.9 Å Crystal Structure of the HDV Ribozyme Precleavage Suggests both Lewis Acid and General Acid Mechanisms Contribute to Phosphodiester Cleavage
inferredcites →https://doi.org/10.1021/bi2000164openalex-snapshot
Metal Binding Motif in the Active Site of the HDV Ribozyme Binds Divalent and Monovalent Ions
inferredcites →https://doi.org/10.1021/bi200471copenalex-snapshot
glmS Riboswitch Binding to the Glucosamine-6-phosphate α-Anomer Shifts the pKa toward Neutrality
inferredcites →https://doi.org/10.1021/bi201157topenalex-snapshot
Two Distinct Catalytic Strategies in the Hepatitis Delta Virus Ribozyme Cleavage Reaction
inferredcites →https://doi.org/10.1021/bi3013092openalex-snapshot
Identification of the Catalytic Mg2+ Ion in the Hepatitis Delta Virus Ribozyme
inferredcites →https://doi.org/10.1021/bi900614vopenalex-snapshot
The Identity of the Nucleophile Substitution May Influence Metal Interactions with the Cleavage Site of the Minimal Hammerhead Ribozyme
inferredcites →https://doi.org/10.1021/bi960870mopenalex-snapshot
Magnesium Ions Are Required by Bacillus subtilis Ribonuclease P RNA for both Binding and Cleaving Precursor tRNAAsp
inferredcites →https://doi.org/10.1021/bi9620464openalex-snapshot
Ribonuclease P Catalysis Requires Mg2+Coordinated to thepro-RPOxygen of the Scissile Bond
inferredcites →https://doi.org/10.1021/bi9913202openalex-snapshot
Identification of the Hammerhead Ribozyme Metal Ion Binding Site Responsible for Rescue of the Deleterious Effect of a Cleavage Site Phosphorothioate
inferredcites →https://doi.org/10.1021/cb200202qopenalex-snapshot
Thermodynamic Evidence for Negative Charge Stabilization by a Catalytic Metal Ion within an RNA Active Site
inferredcites →https://doi.org/10.1021/cr0502605openalex-snapshot
Alternative Roles for Metal Ions in Enzyme Catalysis and the Implications for Ribozyme Chemistry
inferredcites →https://doi.org/10.1021/ja0021316openalex-snapshot
A Highly Sensitive and Selective Catalytic DNA Biosensor for Lead Ions
inferredcites →https://doi.org/10.1021/ja0023534openalex-snapshot
The Peroxidase Activity of a Hemin−DNA Oligonucleotide Complex: Free Radical Damage to Specific Guanine Bases of the DNA
inferredcites →https://doi.org/10.1021/ja016091xopenalex-snapshot
Direct pKa Measurement of the Active-Site Cytosine in a Genomic Hepatitis Delta Virus Ribozyme
inferredcites →https://doi.org/10.1021/ja0743893openalex-snapshot
Direct Measurement of a pKa near Neutrality for the Catalytic Cytosine in the Genomic HDV Ribozyme Using Raman Crystallography
inferredcites →https://doi.org/10.1021/ja076529eopenalex-snapshot
Role of Mg2+ in Hammerhead Ribozyme Catalysis from Molecular Simulation
inferredcites →https://doi.org/10.1021/ja0768441openalex-snapshot
Essential Role of an Active-Site Guanine in glmS Ribozyme Catalysis
inferredcites →https://doi.org/10.1021/ja101370eopenalex-snapshot
Magnesium-Dependent Active-Site Conformational Selection in the Diels−Alderase Ribozyme
inferredcites →https://doi.org/10.1021/ja205185gopenalex-snapshot
The glmS Ribozyme Tunes the Catalytically Critical pKa of Its Coenzyme Glucosamine-6-phosphate
inferredcites →https://doi.org/10.1021/ja207426jopenalex-snapshot
An Active-Site Guanine Participates in glmS Ribozyme Catalysis in Its Protonated State
inferredcites →https://doi.org/10.1021/ja3070528openalex-snapshot
A Transition-State Interaction Shifts Nucleobase Ionization toward Neutrality To Facilitate Small Ribozyme Catalysis
inferredcites →https://doi.org/10.1021/ja403585eopenalex-snapshot
Small, Highly Active DNAs That Hydrolyze DNA
inferredcites →https://doi.org/10.1021/ja804496zopenalex-snapshot
Probing General Base Catalysis in the Hammerhead Ribozyme
inferredcites →https://doi.org/10.1021/ja807790eopenalex-snapshot
Probing General Acid Catalysis in the Hammerhead Ribozyme
inferredcites →https://doi.org/10.1021/jp203202eopenalex-snapshot
Mechanistic Strategies in the HDV Ribozyme: Chelated and Diffuse Metal Ion Interactions and Active Site Protonation
inferredcites →https://doi.org/10.1021/jz2013215openalex-snapshot
Quantum Mechanical/Molecular Mechanical Study of the HDV Ribozyme: Impact of the Catalytic Metal Ion on the Mechanism
inferredcites →https://doi.org/10.1038/26912openalex-snapshot
Crystal structure of a hepatitis delta virus ribozyme
inferredcites →https://doi.org/10.1038/358560a0openalex-snapshot
A small metalloribozyme with a two-step mechanism
inferredcites →https://doi.org/10.1038/nature02362openalex-snapshot
Control of gene expression by a natural metabolite-responsive ribozyme
inferredcites →https://doi.org/10.1038/nature02522openalex-snapshot
A conformational switch controls hepatitis delta virus ribozyme catalysis
inferredcites →https://doi.org/10.1038/nature04074openalex-snapshot
Crystal structure of the RNA component of bacterial ribonuclease P
inferredcites →https://doi.org/10.1038/nature07117openalex-snapshot
A discontinuous hammerhead ribozyme embedded in a mammalian messenger RNA
inferredcites →https://doi.org/10.1038/nature09012openalex-snapshot
Molecular robots guided by prescriptive landscapes
inferredcites →https://doi.org/10.1038/nature09516openalex-snapshot
Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA
inferredcites →https://doi.org/10.1038/nchem.1649openalex-snapshot
RNA with iron(II) as a cofactor catalyses electron transfer
inferredcites →https://doi.org/10.1038/nchembio.201openalex-snapshot
DNA-catalyzed sequence-specific hydrolysis of DNA
inferredcites →https://doi.org/10.1038/nchembio703openalex-snapshot
General acid catalysis by the hepatitis delta virus ribozyme
inferredcites →https://doi.org/10.1038/nsb1003-872aopenalex-snapshot
Erratum: Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
inferredcites →https://doi.org/10.1038/nsb1003-872bopenalex-snapshot
Erratum: Pulling geometry defines the mechanical resistance of a β-sheet protein
inferredcites →https://doi.org/10.1038/nsb959openalex-snapshot
Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
inferredcites →https://doi.org/10.1038/nsmb868openalex-snapshot
Crystal structure of a phage Twort group I ribozyme–product complex
inferredcites →https://doi.org/10.1038/nsmb906openalex-snapshot
Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation
inferredcites →https://doi.org/10.1038/sj.emboj.7601698openalex-snapshot
A guanine nucleobase important for catalysis by the VS ribozyme
inferredcites →https://doi.org/10.1039/9781847558763-00154openalex-snapshot
Characterization of Nucleic Acid–Metal Ion Binding by Spectroscopic Techniques
inferredcites →https://doi.org/10.1039/9781849732512-00141openalex-snapshot
The Roles of Metal Ions in Regulation by Riboswitches
inferredcites →https://doi.org/10.1039/9781849732512-00299openalex-snapshot
11 Metal Ion Binding and Function in Natural and Artificial Small RNA Enzymes from a Structural Perspective
inferredcites →https://doi.org/10.1039/b718428jopenalex-snapshot
DNAzymes for sensing, nanobiotechnology and logic gate applications
inferredcites →https://doi.org/10.1039/c0cc04575fopenalex-snapshot
Merely two mutations switch a DNA-hydrolyzing deoxyribozyme from heterobimetallic (Zn 2+ /Mn 2+ ) to monometallic (Zn 2+ -only) behavior
inferredcites →https://doi.org/10.1039/c2sc01067dopenalex-snapshot
Lanthanide ions as required cofactors for DNA catalysts
inferredcites →https://doi.org/10.1073/pnas.0506662102openalex-snapshot
Crystal structure of a bacterial ribonuclease P RNA
inferredcites →https://doi.org/10.1073/pnas.0510879103openalex-snapshot
The time required for water attack at the phosphorus atom of simple phosphodiesters and of DNA
inferredcites →https://doi.org/10.1073/pnas.0607875104openalex-snapshot
A catalytic beacon sensor for uranium with parts-per-trillion sensitivity and millionfold selectivity
inferredcites →https://doi.org/10.1073/pnas.0608864104openalex-snapshot
Evidence for proton transfer in the rate-limiting step of a fast-cleaving Varkud satellite ribozyme
inferredcites →https://doi.org/10.1073/pnas.1004255107openalex-snapshot
Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme
inferredcites →https://doi.org/10.1073/pnas.1120045109openalex-snapshot
Fe 2+ binds iron responsive element-RNA, selectively changing protein-binding affinities and regulating mRNA repression and activation
inferredcites →https://doi.org/10.1073/pnas.1209062109openalex-snapshot
Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5′ processing
inferredcites →https://doi.org/10.1073/pnas.1217358110openalex-snapshot
UBR box N-recognin-4 (UBR4), an N-recognin of the N-end rule pathway, and its role in yolk sac vascular development and autophagy
inferredcites →https://doi.org/10.1073/pnas.1315742110openalex-snapshot
Enhanced group II intron retrohoming in magnesium-deficient Escherichia coli via selection of mutations in the ribozyme core
inferredcites →https://doi.org/10.1073/pnas.212628899openalex-snapshot
An mRNA structure that controls gene expression by binding FMN
inferredcites →https://doi.org/10.1073/pnas.221456598openalex-snapshot
Metal ion cooperativity in ribozyme cleavage of RNA
inferredcites →https://doi.org/10.1073/pnas.90.14.6498openalex-snapshot
A general two-metal-ion mechanism for catalytic RNA.
inferredcites →https://doi.org/10.1073/pnas.92.10.4686openalex-snapshot
A secondary-structure model for the self-cleaving region of Neurospora VS RNA.
inferredcites →https://doi.org/10.1073/pnas.94.9.4262openalex-snapshot
A general purpose RNA-cleaving DNA enzyme
inferredcites →https://doi.org/10.1073/pnas.97.14.7802openalex-snapshot
A DNA enzyme with N -glycosylase activity
inferredcites →https://doi.org/10.1074/jbc.m111.234906openalex-snapshot
The pH Dependence of Hairpin Ribozyme Catalysis Reflects Ionization of an Active Site Adenine
inferredcites →https://doi.org/10.1089/ast.2012.0868openalex-snapshot
The “Strong” RNA World Hypothesis: Fifty Years Old
inferredcites →https://doi.org/10.1093/emboj/21.10.2461openalex-snapshot
The global structure of the VS ribozyme
inferredcites →https://doi.org/10.1093/emboj/cdf462openalex-snapshot
4‐thio‐U cross‐linking identifies the active site of the VS ribozyme
inferredcites →https://doi.org/10.1093/nar/14.9.3627openalex-snapshot
Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid
inferredcites →https://doi.org/10.1093/nar/25.15.3124openalex-snapshot
Analysis of the cleavage reaction of a trans-acting human hepatitis delta virus ribozyme
inferredcites →https://doi.org/10.1093/nar/28.3.720openalex-snapshot
Active site constraints in the hydrolysis reaction catalyzed by bacterial RNase P: analysis of precursor tRNAs with a single 3'-S-phosphorothiolate internucleotide linkage
inferredcites →https://doi.org/10.1093/nar/29.7.1426openalex-snapshot
Monitoring the structure of Escherichia coli RNase P RNA in the presence of various divalent metal ions
inferredcites →https://doi.org/10.1093/nar/gkh883openalex-snapshot
Cross talk between the +73/294 interaction and the cleavage site in RNase P RNA mediated cleavage
inferredcites →https://doi.org/10.1093/nar/gki993openalex-snapshot
The naturally trans-acting ribozyme RNase P RNA has leadzyme properties
inferredcites →https://doi.org/10.1093/nar/gkm072openalex-snapshot
Mg2+-dependent folding of a Diels-Alderase ribozyme probed by single-molecule FRET analysis
inferredcites →https://doi.org/10.1093/nar/gkq1244openalex-snapshot
NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site
inferredcites →https://doi.org/10.1093/nar/gkr812openalex-snapshot
Three critical hydrogen bonds determine the catalytic activity of the Diels–Alderase ribozyme
inferredcites →https://doi.org/10.1093/nar/gkt039openalex-snapshot
Lewis acid catalysis of phosphoryl transfer from a copper(II)-NTP complex in a kinase ribozyme
inferredcites →https://doi.org/10.1101/gad.11.21.2910openalex-snapshot
A bacterial group II intron encoding reverse transcriptase, maturase, and DNA endonuclease activities: biochemical demonstration of maturase activity and insertion of new genetic information within the intron
inferredcites →https://doi.org/10.1101/gad.1905010openalex-snapshot
Nuclear expression of a group II intron is consistent with spliceosomal intron ancestry
inferredcites →https://doi.org/10.1101/gad.201301openalex-snapshot
Mitochondrial Mg2+ homeostasis is critical for group II intron splicing in vivo
inferredcites →https://doi.org/10.1101/gad.9.3.294openalex-snapshot
The VS catalytic RNA replicates by reverse transcription as a satellite of a retroplasmid.
inferredcites →https://doi.org/10.1126/science.1114994openalex-snapshot
Structural Evidence for a Two-Metal-Ion Mechanism of Group I Intron Splicing
inferredcites →https://doi.org/10.1126/science.1129308openalex-snapshot
A Genomewide Search for Ribozymes Reveals an HDV-Like Sequence in the Human CPEB3 Gene
inferredcites →https://doi.org/10.1126/science.1129666openalex-snapshot
Structural Basis of glmS Ribozyme Activation by Glucosamine-6-Phosphate
inferredcites →https://doi.org/10.1126/science.1153803openalex-snapshot
Crystal Structure of a Self-Spliced Group II Intron
inferredcites →https://doi.org/10.1126/science.1174676openalex-snapshot
Crystal Structure of the Catalytic Core of an RNA-Polymerase Ribozyme
inferredcites →https://doi.org/10.1126/science.1200752openalex-snapshot
Ribozyme-Catalyzed Transcription of an Active Ribozyme
inferredcites →https://doi.org/10.1126/science.286.5437.123openalex-snapshot
Imidazole Rescue of a Cytosine Mutation in a Self-Cleaving Ribozyme
inferredcites →https://doi.org/10.1126/science.287.5457.1493openalex-snapshot
General Acid-Base Catalysis in the Mechanism of a Hepatitis Delta Virus Ribozyme
inferredcites →https://doi.org/10.1126/science.289.5478.452openalex-snapshot
Group II Introns Designed to Insert into Therapeutically Relevant DNA Target Sites in Human Cells
inferredcites →https://doi.org/10.1126/science.7527587openalex-snapshot
The Stereochemical Course of Group II Intron Self-Splicing
inferredcites →https://doi.org/10.1126/science.7688142openalex-snapshot
Ribozymes: A Distinct Class of Metalloenzymes
inferredcites →https://doi.org/10.1128/mcb.15.8.4466openalex-snapshot
Stereochemical Selectivity of Group II Intron Splicing, Reverse Splicing, and Hydrolysis Reactions
inferredcites →https://doi.org/10.1128/mcb.20.22.8432-8446.2000openalex-snapshot
Multiple Homing Pathways Used by Yeast Mitochondrial Group II Introns
inferredcites →https://doi.org/10.1146/annurev-biochem-082108-165150openalex-snapshot
The Mechanism of Peptidyl Transfer Catalysis by the Ribosome
inferredcites →https://doi.org/10.1146/annurev-biophys-083012-130406openalex-snapshot
Structural Studies of RNase P
inferredcites →https://doi.org/10.1146/annurev.bi.64.070195.001355openalex-snapshot
THE MOLECULAR BIOLOGY OF HEPATITIS DELTA VIRUS
inferredcites →https://doi.org/10.1146/annurev.biochem.66.1.19openalex-snapshot
MECHANISTIC ASPECTS OF ENZYMATIC CATALYSIS: Lessons from Comparison of RNA and Protein Enzymes
inferredcites →https://doi.org/10.1146/annurev.biophys.050708.133710openalex-snapshot
Comparative Enzymology and Structural Biology of RNA Self-Cleavage
inferredcites →https://doi.org/10.1146/annurev.biophys.34.040204.144511openalex-snapshot
Ions and RNA Folding
inferredcites →https://doi.org/10.1146/annurev.biophys.34.122004.184428openalex-snapshot
The Structure-Function Dilemma of the Hammerhead Ribozyme
inferredcites →https://doi.org/10.1261/rna.030239.111openalex-snapshot
Ground-state coordination of a catalytic metal to the scissile phosphate of a tertiary-stabilized Hammerhead ribozyme
inferredcites →https://doi.org/10.1261/rna.031401.111openalex-snapshot
The ubiquitous hammerhead ribozyme
inferredcites →https://doi.org/10.1261/rna.1010808openalex-snapshot
Metal ion specificities for folding and cleavage activity in the Schistosoma hammerhead ribozyme
inferredcites →https://doi.org/10.1261/rna.1102308openalex-snapshot
The ionic environment determines ribozyme cleavage rate by modulation of nucleobase p K a
inferredcites →https://doi.org/10.1261/rna.128906openalex-snapshot
Extraordinary rates of transition metal ion-mediated ribozyme catalysis
inferredcites →https://doi.org/10.1261/rna.2266506openalex-snapshot
Characteristics of the glmS ribozyme suggest only structural roles for divalent metal ions
inferredcites →https://doi.org/10.1261/rna.2473711openalex-snapshot
Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid–base catalysis? A critical assessment of available experimental data
inferredcites →https://doi.org/10.1261/rna.571007openalex-snapshot
Evidence that binding of C5 protein to P RNA enhances ribozyme catalysis by influencing active site metal ion affinity
inferredcites →https://doi.org/10.1261/rna.7140504openalex-snapshot
Crystal structure of a group I intron splicing intermediate
inferredcites →https://doi.org/10.1261/rna.7950605openalex-snapshot
Characterization of a native hammerhead ribozyme derived from schistosomes
inferredcites →https://doi.org/10.4161/rna.8.5.16226openalex-snapshot
HDV-like self-cleaving ribozymes
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Metals induce transient folding and activation of the twister ribozyme
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Amino acids catalyse RNA formation under ambient alkaline conditions
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Magnesium ions mediate ligand binding and conformational transition of the SAM/SAH riboswitch
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Molecular bioengineering of functional nucleic acids
inferred← citeshttps://doi.org/10.1039/c5mb00102aopenalex-snapshot
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inferred← citeshttps://doi.org/10.1039/c5qi00125kopenalex-snapshot
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inferred← citeshttps://doi.org/10.1039/c6cc03540jopenalex-snapshot
Expanding biohybrid-mediated asymmetric catalysis into the realm of RNA
inferred← citeshttps://doi.org/10.1039/c6cs00031bopenalex-snapshot
Applications and stereoselective syntheses of P-chirogenic phosphorus compounds
inferred← citeshttps://doi.org/10.1039/c6ob00148copenalex-snapshot
Characterization of deoxyribozymes with site-specific oxidative cleavage activity against DNA obtained by in vitro selection
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G-quadruplex–hemin DNAzyme molecular beacon probe for the detection of methamphetamine
inferred← citeshttps://doi.org/10.1039/c7mt00268hopenalex-snapshot
Multi-metal-dependent nucleic acid enzymes
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A decade of DNA-hybrid catalysis: from innovation to comprehension
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Splitting a DNAzyme enables a Na + -dependent FRET signal from the embedded aptamer
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Tracking the origin of photostability in purine nucleobases: the photophysics of 2-oxopurine
inferred← citeshttps://doi.org/10.1039/c9nr01666jopenalex-snapshot
An investigation of solid-state nanopores on label-free metal-ion signalling via the transition of RNA-cleavage DNAzyme and the hybridization chain reaction
inferred← citeshttps://doi.org/10.1039/c9sc03552dopenalex-snapshot
A DNAzyme-amplified DNA circuit for highly accurate microRNA detection and intracellular imaging
inferred← citeshttps://doi.org/10.1039/d1dt04148gopenalex-snapshot
Phosphorescent Ir( iii ) complexes derived from purine nucleobases
inferred← citeshttps://doi.org/10.1039/d2ob00234eopenalex-snapshot
Who stole the proton? Suspect general base guanine found with a smoking gun in the pistol ribozyme
inferred← citeshttps://doi.org/10.1039/d5sc02436fopenalex-snapshot
A general transition metal binding aptamer following the Irving–Williams series
inferred← citeshttps://doi.org/10.1071/en24054openalex-snapshot
Aqueous lead speciation determined using DNAzyme GR5
inferred← citeshttps://doi.org/10.1073/pnas.1803636115openalex-snapshot
Multiple prebiotic metals mediate translation
inferred← citeshttps://doi.org/10.1080/07391102.2021.2011415openalex-snapshot
Structural and functional characterisation of HepTH1-5 peptide as a potential hepcidin replacement
inferred← citeshttps://doi.org/10.1080/15476286.2021.1874706openalex-snapshot
Biochemical analysis of cleavage and ligation activities of the pistol ribozyme from Paenibacillus polymyxa
inferred← citeshttps://doi.org/10.1089/ast.2014.1213openalex-snapshot
227 Views of RNA: Is RNA Unique in Its Chemical Isomer Space?
inferred← citeshttps://doi.org/10.1093/nar/gkaa345openalex-snapshot
Occurrence and stability of lone pair-π and OH–π interactions between water and nucleobases in functional RNAs
inferred← citeshttps://doi.org/10.1093/nar/gkaa586openalex-snapshot
Cutting in-line with iron: ribosomal function and non-oxidative RNA cleavage
inferred← citeshttps://doi.org/10.1093/nar/gkaa629openalex-snapshot
Frequency and hydrogen bonding of nucleobase homopairs in small molecule crystals
inferred← citeshttps://doi.org/10.1093/nar/gkab655openalex-snapshot
Protein cofactors and substrate influence Mg2+-dependent structural changes in the catalytic RNA of archaeal RNase P
inferred← citeshttps://doi.org/10.1093/nar/gku1296openalex-snapshot
A new heavy lanthanide-dependent DNAzyme displaying strong metal cooperativity and unrescuable phosphorothioate effect
inferred← citeshttps://doi.org/10.1093/nar/gkv1346openalex-snapshot
A DNAzyme requiring two different metal ions at two distinct sites
inferred← citeshttps://doi.org/10.1093/nar/gkv519openalex-snapshot
Rational evolution of Cd 2+ -specific DNAzymes with phosphorothioate modified cleavage junction and Cd 2+ sensing
inferred← citeshttps://doi.org/10.1093/nar/gkw1175openalex-snapshot
Mg2+ions: do they bind to nucleobase nitrogens?
inferred← citeshttps://doi.org/10.1093/nar/gkz574openalex-snapshot
The effect of adenine protonation on RNA phosphodiester backbone bond cleavage elucidated by deaza-nucleobase modifications and mass spectrometry
inferred← citeshttps://doi.org/10.1093/nar/gkz773openalex-snapshot
Dynamical ensemble of the active state and transition state mimic for the RNA-cleaving 8–17 DNAzyme in solution
inferred← citeshttps://doi.org/10.1107/s2052252518006346openalex-snapshot
Protonated nucleobases are not fully ionized in their chloride salt crystals and form metastable base pairs further stabilized by the surrounding anions
inferred← citeshttps://doi.org/10.1139/cjc-2014-0465openalex-snapshot
Lanthanide-dependent RNA-cleaving DNAzymes as metal biosensors
inferred← citeshttps://doi.org/10.1146/annurev-physchem-082423-030241openalex-snapshot
Emerging Mechanisms of Metal-Catalyzed RNA and DNA Modifications
inferred← citeshttps://doi.org/10.1261/rna.051466.115openalex-snapshot
Assessment of metal-assisted nucleophile activation in the hepatitis delta virus ribozyme from molecular simulation and 3D-RISM
inferred← citeshttps://doi.org/10.1261/rna.068437.118openalex-snapshot
Nucleobase carbonyl groups are poor Mg2+inner-sphere binders but excellent monovalent ion binders—a critical PDB survey
inferred← citeshttps://doi.org/10.1261/rna.071894.119openalex-snapshot
The L-platform/L-scaffold framework: a blueprint for RNA-cleaving nucleic acid enzyme design
inferred← citeshttps://doi.org/10.1261/rna.071944.119openalex-snapshot
Molecular simulations of the pistol ribozyme: unifying the interpretation of experimental data and establishing functional links with the hammerhead ribozyme
inferred← citeshttps://doi.org/10.12688/f1000research.8601.1openalex-snapshot
Thirty-five years of research into ribozymes and nucleic acid catalysis: where do we stand today?
inferred← citeshttps://doi.org/10.1515/hsz-2018-0232openalex-snapshot
Tandem DNAzyme for double digestion: a new tool for circRNA suppression
inferred← citeshttps://doi.org/10.15212/bioi-2021-0032openalex-snapshot
Glycan-RNA: a new class of non-coding RNA
inferred← citeshttps://doi.org/10.17352/ojabc.000020openalex-snapshot
Triosephosphate isomerase from baker’s yeast – ribozyme versus protein
inferred← citeshttps://doi.org/10.21203/rs.3.rs-4343389/v1openalex-snapshot
Amino acids catalyze RNA formation under ambient alkaline conditions
inferred← citeshttps://doi.org/10.3389/fgene.2018.00562openalex-snapshot
Generation of 2′,3′-Cyclic Phosphate-Containing RNAs as a Hidden Layer of the Transcriptome
inferred← citeshttps://doi.org/10.3390/books978-3-03897-585-4openalex-snapshot
Homogeneous Catalysis and Mechanisms in Water and Biphasic Media
inferred← citeshttps://doi.org/10.3390/catal14110795openalex-snapshot
Advancing DNAzyme Technology in Tumor Treatment
inferred← citeshttps://doi.org/10.3390/catal7120355openalex-snapshot
Catalytic Activities of Ribozymes and DNAzymes in Water and Mixed Aqueous Media
inferred← citeshttps://doi.org/10.3390/catal8110550openalex-snapshot
RNA-Cleaving DNAzymes: Old Catalysts with New Tricks for Intracellular and In Vivo Applications
inferred← citeshttps://doi.org/10.3390/life4040887openalex-snapshot
Looked at Life from Both Sides Now
inferred← citeshttps://doi.org/10.3390/molecules201119730openalex-snapshot
DNA Catalysis: The Chemical Repertoire of DNAzymes
inferred← citeshttps://doi.org/10.3390/molecules26020514openalex-snapshot
Effects of Ionic Liquids on Metalloproteins
inferred← citeshttps://doi.org/10.3390/molecules27238379openalex-snapshot
Tellurium-Modified Nucleosides, Nucleotides, and Nucleic Acids with Potential Applications
inferred← citeshttps://doi.org/10.3390/molecules28031428openalex-snapshot
A Practical Approach to Bicyclic Carbamoyl Pyridones with Application to the Synthesis of HIV-1 Integrase Strand Transfer Inhibitors
inferred← citeshttps://doi.org/10.3390/molecules29194737openalex-snapshot
Recent Advances and Prospects of Nucleic Acid Therapeutics for Anti-Cancer Therapy
inferred← citeshttps://doi.org/10.3390/molecules29215011openalex-snapshot
DNA Catalysis: Design, Function, and Optimization
inferred← citeshttps://doi.org/10.3390/polym9120666openalex-snapshot
Nucleobase-Containing Polymers: Structure, Synthesis, and Applications
inferred← citeshttps://doi.org/10.3762/bjoc.14.68openalex-snapshot
Phosphodiester models for cleavage of nucleic acids
inferred← citeshttps://doi.org/10.5026/jgeography.129.779openalex-snapshot
Hadean Primordial Metabolism Pathway Driven by a Nuclear Geyser
inferred← citeshttps://doi.org/10.70675/436bd724z0c1ez42c2z9e6dz274b3b4242abopenalex-snapshot
Original chiral scaffolds bearing P-stereogenic centres
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