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Protein−Protein Interactions: Interface Structure, Binding Thermodynamics, and Mutational Analysis

https://doi.org/10.1021/cr960387h
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Outgoing claims: the papers this work cites, builds on, or argues with.

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A single amino acid in the SH3 domain of Hck determines its high affinity and specificity in binding to HIV‐1 Nef protein.
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Structural and physicochemical analysis of the reaction between the anti‐lysozyme antibody D1.3 and the anti‐idiotopic antibodies E225 and E5.2
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A role for surface hydrophobicity in protein‐protein recognition
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Subunit interface mutants of rabbit muscle aldolase form active dimers
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Engineering the quaternary structure of an enzyme: Construction and analysis of a monomeric form of malate dehydrogenase from Escherichia coli
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Cavities and packing at protein interfaces
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Studies of protein‐protein interfaces: A statistical analysis of the hydrophobic effect
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The surface area of monomeric proteins: Significance of power law behavior
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Distribution and complementarity of hydropathy in mutisunit proteins
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Structural energetics of peptide recognition: Angiotensin II/antibody binding
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Identification of critical contact residues in the NC41 epitope of a subtype N9 influenza virus neuraminidase
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Configurational effects in antibody–antigen interactions studied by microcalorimetry
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The Inhibition of HIV-1 Protease by Interface Peptides
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Thermodynamic Characterization of the Interactions between Cytochrome b5 and Cytochrome c
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Antibody-Protein Complexes
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Shape Complementarity at Protein/Protein Interfaces
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The Contribution of Contact and Non-contact Residues of Antibody in the Affinity of Binding to Antigen
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Thermodynamic Mapping of the Inhibitor Site of the Aspartic Protease Endothiapepsin
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Direct Measurement of the Association of a Protein with a Family of Membrane Receptors
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Molecular Interaction Between the Strep-tag Affinity Peptide and its Cognate Target, Streptavidin
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Induced Pocket to Accommodate the Cell Attachment Arg-Gly-Asp Motif in a Neutralizing Antibody Against Foot-and-Mouth-Disease Virus
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Three hTIM Mutants that Provide New Insights on why TIM is a Dimer
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Solution Structure of the Superactive Monomeric Des-[Phe(B25)] Human Insulin Mutant: Elucidation of the Structural Basis for the Monomerization of Des-[Phe(B25)] Insulin and the Dimerization of Native Insulin
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Crystal Structure of the Complex of the Variable Domain of Antibody D1.3 and Turkey Egg White Lysozyme: A Novel Conformational Change in Antibody CDR-L3 Selects for Antigen
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Structural Diversity in a Family of Homologous Proteins
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A Dataset of Protein–Protein Interfaces Generated with a Sequence-order-independent Comparison Technique
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Antibody-antigen Interactions: Contact Analysis and Binding Site Topography
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Thermodynamic Characterization of the Coupled Folding and Association of Heterodimeric Coiled Coils (Leucine Zippers)
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Dissecting the energetics of a protein-protein interaction: the binding of ovomucoid third domain to elastase 1 1Edited by P. E. Wright
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Thermodynamic Data for Biochemistry and Biotechnology
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Thermodynamics of Protein-Protein Association
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Protein-Protein Interactions
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Rapid measurement of binding constants and heats of binding using a new titration calorimeter
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Structural and functional effects of mutations altering the subunit interface of mitochondrial malate dehydrogenase
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Amino acid residues forming the interface of a neuronal nicotinic acetylcholine receptor with κ-bungarotoxin: A study using single residue substituted peptide analogs
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Dissociation constants and thermal stability of complexes of Bacillus intermedius RNase and the protein inhibitor of Bacillus amyloliquefaciens RNase
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On the environment of ionizable groups in globular proteins
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Surface, subunit interfaces and interior of oligomeric proteins
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Solid model compounds and the thermodynamics of protein unfolding
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Structure, function and properties of antibody binding sites
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New algorithm to model protein-protein recognition based on surface complementarity
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High resolution functional analysis of antibody-antigen interactions
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[18] Systematic mutational analyses of protein-protein interfaces
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[8] Tight binding affinities determined from thermodynamic linkage to protons by titration calorimetry
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[9] Calorimetric methods for interpreting protein—Ligand interactions
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Protein-protein interactions: A review of protein dimer structures
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Antibody Fab assembly: The interface residues between CH1 and CL
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Protein—protein interactions: structural motifs and molecular recognition
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Antibody-antigen interactions
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How calmodulin binds its targets: sequence independent recognition of amphiphilic α-helices
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The crystal structure of an engineered monomeric triosephosphate isomerase, monoTIM: the correct modelling of an eight-residue loop
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Major antigen-induced domain rearrangements in an antibody
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The structure of protein-protein recognition sites.
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Independent binding of peptide ligands to the SH2 and SH3 domains of Grb2.
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The oxidative inactivation of human alpha-1-proteinase inhibitor. Further evidence for methionine at the reactive center.
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Microcalorimetric investigation of the interactions in the ternary complex calmodulin-calcium-melittin.
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The Importance of the Link Between Glu204 of the Catalytic Chain and Arg130 of the Regulatory Chain for the Homotropic and Heterotropic Properties of Escherichia coli Aspartate Transcarbamoylase
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Calorimetry of Some Trypsin-Trypsin Inhibitor Reactions
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Contribution to antibody-antigen interaction of structurally perturbed antigenic residues upon antibody binding.
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Microcalorimetric investigation of the interaction of calmodulin with seminalplasmin and myosin light chain kinase.
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Stability of Protein Structure and Hydrophobic Interaction
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Energetics of Protein Structure
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Thermodynamics of Structural Stability and Cooperative Folding Behavior in Proteins
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Crystal Structure of the Conserved Core of HIV-1 Nef Complexed with a Src Family SH3 Domain
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Peptide–protein interactions: an overview
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A Calorimetric Study of the Thermal Stability of Barstar and Its Interaction with Barnase
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Enthalpy of Antibody-Cytochrome c Binding
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Calorimetric studies on the interaction of horse ferricytochrome c and yeast cytochrome c peroxidase
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Analysis of the Factor VIIa Binding Site on Human Tissue Factor: Effects of Tissue Factor Mutations on the Kinetics and Thermodynamics of Binding
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Response Regulators CheB and CheY Exhibit Competitive Binding to the Kinase CheA
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Spectroscopic, Calorimetric, and Kinetic Demonstration of Conformational Adaptation in Peptide-Antibody Recognition
inferredcites →https://doi.org/10.1021/bi00078a005openalex-snapshot
Thermodynamic analysis of an antibody functional epitope
inferredcites →https://doi.org/10.1021/bi00120a019openalex-snapshot
Heat capacity changes for protein-peptide interactions in the ribonuclease S system
inferredcites →https://doi.org/10.1021/bi00121a025openalex-snapshot
Mutations at the dimer, hexamer, and receptor-binding surfaces of insulin independently affect insulin-insulin and insulin-receptor interactions
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Antigen binding thermodynamics and antiproliferative effects of chimeric and humanized anti-p185HER2 antibody Fab fragments
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Construction of a stable dimer of Bacillus stearothermophilus lactate dehydrogenase
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Crystal structure and ligand binding studies of a screened peptide complexed with streptavidin
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Solubilizing Buried Domains of Proteins: A Self-Assembling Interface Domain from Glutathione Reductase
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Isothermal Titration Calorimetric Study of the Association of Hen Egg Lysozyme and the Anti-Lysozyme Antibody HyHEL-5
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Protein folding: local structures, domains, subunits, and assemblies
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On the role of methionine residues in the sequence-independent recognition of nonpolar protein surfaces
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Thermodynamics of Ferredoxin Binding to Ferredoxin:NADP+ Reductase and the Role of Water at the Complex Interface
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Calorimetric studies of the binding of Streptomyces subtilisin inhibitor to subtilisin of Bacillus subtilis strain N'
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Thermodynamics of the binding of Streptomyces subtilisin inhibitor to .alpha.-chymotrypsin
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Reversible dissociation of dimeric tyrosyl-tRNA synthetase by mutagenesis at the subunit interface
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Subunit interface of triosephosphate isomerase: site-directed mutagenesis and characterization of the altered enzyme
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Effects of engineering complementary charged residues into the hydrophobic subunit interface of tyrosyl-tRNA synthetase
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An intersubunit interaction at the active site of D-ribulose-1,5-bisphosphate carboxylase/oxygenase as revealed by cross-linking and site-directed mutagenesis
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On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3, and HyHEL-5
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Method for Predicting the State of Association of Discretized Protein Models. Application to Leucine Zippers†
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Dimerization of the Extracellular Domain of the Erythropoietin (EPO) Receptor by EPO: One High-Affinity and One Low-Affinity Interaction
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Stabilization of Human Triosephosphate Isomerase by Improvement of the Stability of Individual α-Helices in Dimeric as well as Monomeric Forms of the Protein
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The Receptor Binding Site for the Methyltransferase of Bacterial Chemotaxis Is Distinct from the Sites of Methylation
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Structural and Mutational Analysis of Affinity-Inert Contact Residues at the Growth Hormone−Receptor Interface
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Alanine Point-Mutations in the Reactive Region of Bovine Pancreatic Trypsin Inhibitor: Effects on the Kinetics and Thermodynamics of Binding to β-Trypsin and α-Chymotrypsin
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Alternative Modes of Tyrosyl Phosphopeptide Binding to a Src Family SH2 Domain: Implications for Regulation of Tyrosine Kinase Activity
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Large Heat Capacity Change in a Protein−Monovalent Cation Interaction
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Structural Requirements and Thermodynamics of the Interaction of Proline Peptides with Profilin
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Structural and Thermodynamic Characterization of the Interaction of the SH3 Domain from Fyn with the Proline-Rich Binding Site on the p85 Subunit of PI3-Kinase
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van't Hoff revisited: enthalpy of association of protein subunits
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Thermodynamics of the association and the pressure dissociation of oligomeric proteins
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Gene Mutations in Human Hæmoglobin: the Chemical Difference Between Normal and Sickle Cell Hæmoglobin
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Principles of protein–protein recognition
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Generation of an antibody with enhanced affinity and specificity for its antigen by protein engineering
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The accessible surface area and stability of oligomeric proteins
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Monomeric insulins obtained by protein engineering and their medical implications
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Neu receptor dimerization
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Reverse hydrophobic effects relieved by amino-acid substitutions at a protein surface
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An equation of state describing hydrophobic interactions
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Heat capacity and entropy changes in processes involving proteins.
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Dimerization of the tat protein from human immunodeficiency virus: a cysteine-rich peptide mimics the normal metal-linked dimer interface.
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Modulation of the stability of a gene-regulatory protein dimer by DNA and cAMP.
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A systematic mutational analysis of hormone-binding determinants in the human growth hormone receptor.
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High-resolution mapping of the HyHEL-10 epitope of chicken lysozyme by site-directed mutagenesis.
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Bound water molecules and conformational stabilization help mediate an antigen-antibody association.
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Significant discrepancies between van't Hoff and calorimetric enthalpies.
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Measurement of the binding of tyrosyl phosphopeptides to SH2 domains: a reappraisal.
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Principles of protein-protein interactions.
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The N-terminal domain of Escherichia coli enzyme I of the phosphoenolpyruvate/glycose phosphotransferase system: molecular cloning and characterization.
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Binding Interactions of Human Interleukin 5 with Its Receptor α Subunit
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The Hydrophobic Nature of GroEL-Substrate Binding
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Role of Tyr Residues in the Contact Region of Anti-lysozyme Monoclonal Antibody HyHEL10 for Antigen Binding
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Human Stem Cell Factor Dimer Forms a Complex with Two Molecules of the Extracellular Domain of Its Receptor, Kit
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Role of Salt Bridge Formation in Antigen-Antibody Interaction
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Thermodynamic Studies of SHC Phosphotyrosine Interaction Domain Recognition of the NPXpY Motif
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An investigation of protein subunit and domain interfaces
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The price of lost freedom: entropy of bimolecular complex formation
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The structure of interfaces between subunits of dimeric and tetrameric proteins
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CHAINS OF ALTERNATING SULFUR AND π‐BONDED ATOMS IN EIGHT SMALL PROTEINS
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Thermodynamics of Antigen-antibody Binding using Specific Anti-lysozyme Antibodies
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Thermodynamics of Antigen-antibody Binding using Specific Anti-lysozyme Antibodies
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Stable, Monomeric Variants of λ Cro Obtained by Insertion of a Designed β-Hairpin Sequence
inferredcites →https://doi.org/10.1126/science.2471267openalex-snapshot
High-Resolution Epitope Mapping of hGH-Receptor Interactions by Alanine-Scanning Mutagenesis
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Cigarette Smoking Induces Functional Antiprotease Deficiency in the Lower Respiratory Tract of Humans
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A Hot Spot of Binding Energy in a Hormone-Receptor Interface
inferredcites →https://doi.org/10.1126/science.8303294openalex-snapshot
Coupling of Local Folding to Site-Specific Binding of Proteins to DNA
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ANTIBODY-ANTIGEN COMPLEXES
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HEMATOPOIETIC RECEPTOR COMPLEXES
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A model of decreased functional alpha-1-proteinase inhibitor. Pulmonary pathology of dogs exposed to chloramine T.
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A causal role for amyloid in Alzheimer's disease

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Molecular Characterization, Subtyping, and Drug Resistance Pattern in Pol Gene of Hiv-1 in Pakistani Population
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Investigation of Sugar-Binding Sites in Ternary Ligand−Copper(II)−Carbohydrate Complexes
inferred← citeshttps://doi.org/10.1002/1521-3757(20000804)112:15<2822::aid-ange2822>3.0.co;2-1openalex-snapshot
Small-Molecule Inhibitors of HIV-1 Protease Dimerization Derived from Cross-Linked Interfacial Peptides
inferred← citeshttps://doi.org/10.1002/1521-4141(200207)32:7<1924::aid-immu1924>3.0.co;2-nopenalex-snapshot
Comparison of CD22 binding to native CD45 and synthetic oligosaccharide
inferred← citeshttps://doi.org/10.1002/9780470882207.ch20openalex-snapshot
Modeling Mutations in Proteins Using Medusa and Discrete Molecule Dynamics
inferred← citeshttps://doi.org/10.1002/9781118935682.ch14openalex-snapshot
Protein Characterization by Thermal Property Measurement
inferred← citeshttps://doi.org/10.1002/9783527619375.ch4copenalex-snapshot
Protein Secondary Structure Mimetics as Modulators of Protein–Protein and Protein‐Ligand Interactions
inferred← citeshttps://doi.org/10.1002/9783527627011.ch8openalex-snapshot
Multivalent Synthetic Receptors for Proteins
inferred← citeshttps://doi.org/10.1002/9783527634026.ch6openalex-snapshot
Protein Dynamics and the Evolution of Novel Protein Function
inferred← citeshttps://doi.org/10.1002/adma.202312915openalex-snapshot
3D Nanofabrication via Directed Material Assembly: Mechanism, Method, and Future
inferred← citeshttps://doi.org/10.1002/advs.202105179openalex-snapshot
A Bionic‐Homodimerization Strategy for Optimizing Modulators of Protein–Protein Interactions: From Statistical Mechanics Theory to Potential Clinical Translation
inferred← citeshttps://doi.org/10.1002/aidi.202500225openalex-snapshot
Revealing Protein–Protein Interactions Using a Graph Theory‐Augmented Deep Learning Approach
inferred← citeshttps://doi.org/10.1002/ange.200461786openalex-snapshot
Strategien zur Modulation von Protein‐Protein‐Wechselwirkungen mit synthetischen Substanzen
inferred← citeshttps://doi.org/10.1002/ange.200462316openalex-snapshot
Terphenyl‐Based Helical Mimetics That Disrupt the p53/HDM2 Interaction
inferred← citeshttps://doi.org/10.1002/ange.200802947openalex-snapshot
Bindungsmechanismen in supramolekularen Komplexen
inferred← citeshttps://doi.org/10.1002/ange.201201114openalex-snapshot
Multivalenz als chemisches Organisations‐ und Wirkprinzip
inferred← citeshttps://doi.org/10.1002/ange.201301032openalex-snapshot
Dynamic Molecular Recognition in Solid State for Separating Mixtures of Isomeric Dicarboxylic Acids
inferred← citeshttps://doi.org/10.1002/ange.201309160openalex-snapshot
Structure of a Complex Formed by a Protein and a Helical Aromatic Oligoamide Foldamer at 2.1 Å Resolution
inferred← citeshttps://doi.org/10.1002/anie.200461786openalex-snapshot
Strategies for Targeting Protein–Protein Interactions With Synthetic Agents
inferred← citeshttps://doi.org/10.1002/anie.200462316openalex-snapshot
Terphenyl‐Based Helical Mimetics That Disrupt the p53/HDM2 Interaction
inferred← citeshttps://doi.org/10.1002/anie.200802947openalex-snapshot
Binding Mechanisms in Supramolecular Complexes
inferred← citeshttps://doi.org/10.1002/anie.201201114openalex-snapshot
Multivalency as a Chemical Organization and Action Principle
inferred← citeshttps://doi.org/10.1002/anie.201301032openalex-snapshot
Dynamic Molecular Recognition in Solid State for Separating Mixtures of Isomeric Dicarboxylic Acids
inferred← citeshttps://doi.org/10.1002/anie.201309160openalex-snapshot
Structure of a Complex Formed by a Protein and a Helical Aromatic Oligoamide Foldamer at 2.1 Å Resolution
inferred← citeshttps://doi.org/10.1002/cbdv.200590023openalex-snapshot
Exploring the Mechnisms of Molecular Recognition by Flavins
inferred← citeshttps://doi.org/10.1002/cbf.70261openalex-snapshot
Thermodynamic Frontiers in Hemoglobin‐Inspired Polymer Science for Diagnosis and Modulation of Neurodegenerative Diseases
inferred← citeshttps://doi.org/10.1002/cbic.200600486openalex-snapshot
Encapsulation of Hemoglobin in Mesoporous Silica (FSM)—Enhanced Thermal Stability and Resistance to Denaturants
inferred← citeshttps://doi.org/10.1002/cbic.200600546openalex-snapshot
Exploration of Backbone Space in Foldamers Containing α‐ and β‐Amino Acid Residues: Developing Protease‐Resistant Oligomers that Bind Tightly to the BH3‐Recognition Cleft of Bcl‐xL
inferred← citeshttps://doi.org/10.1002/cbic.201800521openalex-snapshot
Cucurbit[8]uril Reactivation of an Inactivated Caspase‐8 Mutant Reveals Differentiated Enzymatic Substrate Processing
inferred← citeshttps://doi.org/10.1002/cbic.202300020openalex-snapshot
p‐Chloropropynyl Phenylalanine, a Versatile Non‐Canonical Amino Acid for Co‐Translational Peptide Macrocyclization and Side Chain Diversification
inferred← citeshttps://doi.org/10.1002/chem.200601040openalex-snapshot
Allosteric Tuning of the Intra‐Cavity Binding Properties of a Calix[6]arene through External Binding to a ZnII Center Coordinated to Amino Side Chains
inferred← citeshttps://doi.org/10.1002/chem.201202998openalex-snapshot
Alkaline Earth Metal Ion Induced Coil–Helix–Coil Transition of Lysine–Coumarin–Azacrown Hybrid Foldamers with OFF–OFF–ON Fluorescence Switching
inferred← citeshttps://doi.org/10.1002/chem.201203100openalex-snapshot
Do Intrinsically Disordered Proteins Possess High Specificity in Protein–Protein Interactions?
inferred← citeshttps://doi.org/10.1002/chem.201402399openalex-snapshot
Affinity Polymers Tailored for the Protein A Binding Site of Immunoglobulin G Proteins
inferred← citeshttps://doi.org/10.1002/chin.199744329openalex-snapshot
ChemInform Abstract: Protein‐Protein Interactions: Interface Structure, Binding Thermodynamics, and Mutational Analysis
inferred← citeshttps://doi.org/10.1002/cmdc.202400361openalex-snapshot
Direct Inhibition of the YAP : TEAD Interaction: An Unprecedented Drug Discovery Challenge
inferred← citeshttps://doi.org/10.1002/cplu.202100036openalex-snapshot
Synthesis and Evaluation of Arylamides with Hydrophobic Side Chains for Insulin Aggregation Inhibition
inferred← citeshttps://doi.org/10.1002/eji.200425501openalex-snapshot
The central residues of a T cell receptor sequence motif are key determinants of autoantigen recognition in murine experimental autoimmune encephalomyelitis
inferred← citeshttps://doi.org/10.1002/ejic.200900444openalex-snapshot
Ferrocene Conjugates Containing Diarginine and Aspartic Acid: Salt Bridge Interactions in Water
inferred← citeshttps://doi.org/10.1002/ejoc.201300069openalex-snapshot
Aromatic Oligoamide Foldamers with a “Wet Edge” as Inhibitors of the α‐Helix‐Mediated p53–hDM2 Protein–Protein Interaction
inferred← citeshttps://doi.org/10.1002/ejoc.202001359openalex-snapshot
Trimodular Solution‐Phase Protocol for Rapid Large‐Scale Synthesis of Hydrogen Bond Surrogate‐Constrained α‐Helicomimics
inferred← citeshttps://doi.org/10.1002/jcc.10379openalex-snapshot
Converging free energy estimates: MM‐PB(GB)SA studies on the protein–protein complex Ras–Raf
inferred← citeshttps://doi.org/10.1002/jmr.597openalex-snapshot
Protein–protein interactions: mechanisms and modification by drugs
inferred← citeshttps://doi.org/10.1002/jmr.809openalex-snapshot
An unconventional IAP‐binding motif revealed by target‐assisted iterative screening (TAIS) of the BIR3‐cIAP1 domain
inferred← citeshttps://doi.org/10.1002/jmr.845openalex-snapshot
Statistical aspects of van't Hoff analysis: a simulation study
inferred← citeshttps://doi.org/10.1002/jmr.896openalex-snapshot
Thermodynamics of T‐cell receptor–peptide/MHC interactions: progress and opportunities
inferred← citeshttps://doi.org/10.1002/jmr.958openalex-snapshot
Contribution of the trifluoroacetyl group in the thermodynamics of antigen–antibody binding
inferred← citeshttps://doi.org/10.1002/masy.201050106openalex-snapshot
Dendritic Macromolecules as Inhibitors to Protein‐Protein Binding
inferred← citeshttps://doi.org/10.1002/minf.201400090openalex-snapshot
Fractal Dimensions of Macromolecular Structures
inferred← citeshttps://doi.org/10.1002/minf.201700031openalex-snapshot
Computational Studies of the Active and Inactive Regulatory Domains of Response Regulator PhoP Using Molecular Dynamics Simulations
inferred← citeshttps://doi.org/10.1002/pmic.200390053openalex-snapshot
Protein‐protein interactions as a target for drugs in proteomics
inferred← citeshttps://doi.org/10.1002/poc.3805openalex-snapshot
1H NMR‐based method for the determination of complexation equilibrium parameters and chemical shifts in a hydrogen‐bonded system with dynamic composition
inferred← citeshttps://doi.org/10.1002/poc.381openalex-snapshot
Calorimetric and NMR studies on the direct correlation between supramolecular complex structure and the thermodynamics of N‐benzyloxycarbonyl‐ L ‐aspartic and ‐glutamic acid inclusion complexes with mono‐ and bis(trimethylammonio)‐β‐cyclodextrins
inferred← citeshttps://doi.org/10.1002/pol.20251191openalex-snapshot
Engineering Crosslinker‐Free Sericin–Gelatin Hydrogels With Tunable Rheology for 3D Printing Applications
inferred← citeshttps://doi.org/10.1002/pro.2985openalex-snapshot
An insight into the thermodynamic characteristics of human thrombopoietin complexation with TN1 antibody
inferred← citeshttps://doi.org/10.1002/pro.43openalex-snapshot
Knitting and untying the protein network: Modulation of protein ensembles as a therapeutic strategy
inferred← citeshttps://doi.org/10.1002/pro.4447openalex-snapshot
Evolutionary trajectory of receptor binding specificity and promiscuity of the spike protein of SARS‐CoV ‐2
inferred← citeshttps://doi.org/10.1002/pro.580openalex-snapshot
A structure‐based benchmark for protein–protein binding affinity
inferred← citeshttps://doi.org/10.1002/pro.648openalex-snapshot
An anti‐hapten camelid antibody reveals a cryptic binding site with significant energetic contributions from a nonhypervariable loop
inferred← citeshttps://doi.org/10.1002/pro.674openalex-snapshot
Quantitation of protein–protein interactions by thermal stability shift analysis
inferred← citeshttps://doi.org/10.1002/prot.10480openalex-snapshot
Construction of molecular assemblies via docking: Modeling of tetramers with D2 symmetry
inferred← citeshttps://doi.org/10.1002/prot.20107openalex-snapshot
Calculating proton uptake/release and binding free energy taking into account ionization and conformation changes induced by protein–inhibitor association: Application to plasmepsin, cathepsin D and endothiapepsin–pepstatin complexes
inferred← citeshttps://doi.org/10.1002/prot.20417openalex-snapshot
Cation–π interactions in protein–protein interfaces
inferred← citeshttps://doi.org/10.1002/prot.21639openalex-snapshot
Energetics of protein homodimerization: Effects of water sequestering on the formation of β‐lactoglobulin dimer
inferred← citeshttps://doi.org/10.1002/prot.21657openalex-snapshot
Protein–protein binding is often associated with changes in protonation state
inferred← citeshttps://doi.org/10.1002/prot.21694openalex-snapshot
A knowledge‐based forcefield for protein–protein interface design
inferred← citeshttps://doi.org/10.1002/prot.22820openalex-snapshot
Smoothing molecular interactions: The “kinetic buffer” effect of intrinsically disordered proteins
inferred← citeshttps://doi.org/10.1002/prot.22978openalex-snapshot
Indefinite noncooperative self‐association of chicken deoxy hemoglobin D
inferred← citeshttps://doi.org/10.1002/prot.24057openalex-snapshot
Computational investigation of the HIV‐1 Rev multimerization using molecular dynamics simulations and binding free energy calculations
inferred← citeshttps://doi.org/10.1002/prot.24761openalex-snapshot
Inferring the microscopic surface energy of protein–protein interfaces from mutation data
inferred← citeshttps://doi.org/10.1002/prot.25041openalex-snapshot
Interplay between binding affinity and kinetics in protein–protein interactions
inferred← citeshttps://doi.org/10.1002/prot.26047openalex-snapshot
Robust principal component analysis‐based prediction of protein‐protein interaction hot spots
inferred← citeshttps://doi.org/10.1002/prot.26477openalex-snapshot
Predicting binding affinity changes from long‐distance mutations using molecular dynamics simulations and Rosetta
inferred← citeshttps://doi.org/10.1002/rcm.6797openalex-snapshot
Structural studies of the sBBI/trypsin non‐covalent complex using covalent modification and mass spectrometry
inferred← citeshttps://doi.org/10.1002/smll.201100478openalex-snapshot
Beauty is Skin Deep: A Surface Monolayer Perspective on Nanoparticle Interactions with Cells and Bio‐macromolecules
inferred← citeshttps://doi.org/10.1002/zaac.200400032openalex-snapshot
Metalated Container Molecules
inferred← citeshttps://doi.org/10.1006/abbi.2001.2407openalex-snapshot
Dynamic Features of the Subunit Interface of Cu,Zn Superoxide Dismutase as Probed by Tryptophan Phosphorescence
inferred← citeshttps://doi.org/10.1006/jmbi.1998.1979openalex-snapshot
GlnK, a PII-homologue: structure reveals ATP binding site and indicates how the T-loops may be involved in molecular recognition
inferred← citeshttps://doi.org/10.1006/jmbi.2000.3656openalex-snapshot
Evaluation of direct and cooperative contributions towards the strength of buried hydrogen bonds and salt bridges
inferred← citeshttps://doi.org/10.1007/0-306-46881-6_210openalex-snapshot
Towards artificial antibodies: Protein surface recognition by synthetic receptors
inferred← citeshttps://doi.org/10.1007/0-387-24532-4_7openalex-snapshot
Thermochemistry of Binary and Ternary Protein Interactions Measured by Titration Calorimetry: Complex Formation of CD4, HIV gp120, and Anti-gp120
inferred← citeshttps://doi.org/10.1007/1-4020-5372-x_6openalex-snapshot
Computational Determination of the Relative Free Energy of Binding – Application to Alanine Scanning Mutagenesis
inferred← citeshttps://doi.org/10.1007/128_2011_265openalex-snapshot
Targeting Protein–Protein Interactions and Fragment-Based Drug Discovery
inferred← citeshttps://doi.org/10.1007/978-0-387-84870-9_7openalex-snapshot
Protein-Protein Interaction and Macromolecular Visualization
inferred← citeshttps://doi.org/10.1007/978-1-0716-0524-0_22openalex-snapshot
Binding Thermodynamics to Intrinsically Disordered Protein Domains
inferred← citeshttps://doi.org/10.1007/978-1-4020-5941-4_14openalex-snapshot
Protein-Protein Docking Using Three-Dimensional Reduced Representations and Based on a Genetic Algorithm
inferred← citeshttps://doi.org/10.1007/978-1-59745-274-8_2openalex-snapshot
Targeting the p53/MDM2 Pathway for Cancer Therapy
inferred← citeshttps://doi.org/10.1007/978-1-61779-931-0_12openalex-snapshot
Temperature-Dependent Antibody Kinetics as a Tool in Antibody Lead Selection
inferred← citeshttps://doi.org/10.1007/978-3-031-46545-1_12openalex-snapshot
Protein–Protein Interaction for Drug Discovery
inferred← citeshttps://doi.org/10.1007/978-3-540-76326-0_5openalex-snapshot
Regulatory Protein-Protein Interactions in Primary Metabolism: The Case of the Cysteine Synthase Complex
inferred← citeshttps://doi.org/10.1007/978-3-642-28965-1_1openalex-snapshot
Protein-Protein Interactions as Drug Targets
inferred← citeshttps://doi.org/10.1007/978-3-642-37999-4openalex-snapshot
Disruption of protein-protein interfaces: in search of new inhibitors
inferred← citeshttps://doi.org/10.1007/978-3-642-37999-4_6openalex-snapshot
Fluorescence Observables and Enzyme Kinetics in the Investigation of PPI Modulation by Small Molecules: Detection, Mechanistic Insight, and Functional Consequences
inferred← citeshttps://doi.org/10.1007/978-3-662-05597-7_11openalex-snapshot
Adenovirus Interaction with Its Cellular Receptor CAR
inferred← citeshttps://doi.org/10.1007/978-94-011-4554-1_11openalex-snapshot
Protein Surface Recognition by Synthetic Receptors
inferred← citeshttps://doi.org/10.1007/978-94-024-1069-3_8openalex-snapshot
Prediction of Biomolecular Complexes
inferred← citeshttps://doi.org/10.1007/978-981-16-1594-8_2openalex-snapshot
Structural Aspects of Protein–Protein Interactions
inferred← citeshttps://doi.org/10.1007/978-981-16-1594-8_3openalex-snapshot
Energetic Aspects of Protein–Protein Interactions (PPIs)
inferred← citeshttps://doi.org/10.1007/978-981-99-2423-3_6openalex-snapshot
Drug Design Methods to Regulate Protein–Protein Interactions
inferred← citeshttps://doi.org/10.1007/978-981-99-2423-3_7openalex-snapshot
Small-Molecule Inhibitors of Protein–Protein Interactions as Therapeutics
inferred← citeshttps://doi.org/10.1007/s00018-009-0014-6openalex-snapshot
Functional aspects of protein flexibility
inferred← citeshttps://doi.org/10.1007/s00726-011-0880-8openalex-snapshot
Helix-mediated protein–protein interactions as targets for intervention using foldamers
inferred← citeshttps://doi.org/10.1007/s00894-011-1159-4openalex-snapshot
The molecular basis of IGF-II/IGF2R recognition: a combined molecular dynamics simulation, free-energy calculation and computational alanine scanning study
inferred← citeshttps://doi.org/10.1007/s10822-014-9779-2openalex-snapshot
Molecular insight into γ–γ tubulin lateral interactions within the γ-tubulin ring complex (γ-TuRC)
inferred← citeshttps://doi.org/10.1007/s10847-011-0088-2openalex-snapshot
Recognition of exterior protein surfaces using artificial ligands based on calixarenes, crown ethers, and tetraphenylporphyrins
inferred← citeshttps://doi.org/10.1007/s10930-012-9416-7openalex-snapshot
Characterization of Molten Globule PopB in Absence and Presence of Its Chaperone PcrH
inferred← citeshttps://doi.org/10.1007/s12013-008-9007-6openalex-snapshot
The Protein-Binding Potential of C2H2 Zinc Finger Domains
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.12392-3openalex-snapshot
Protein–Protein Interaction Inhibitors in Cancer
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.12413-8openalex-snapshot
Strategy and Tactics for Designing Analogs: Biochemical Characterization of the Large Molecules
inferred← citeshttps://doi.org/10.1016/b978-0-323-90264-9.00007-6openalex-snapshot
Experimental methods to study the thermodynamics of protein–protein interactions
inferred← citeshttps://doi.org/10.1016/b978-0-323-99507-8.00039-1openalex-snapshot
Free energy simulations to quantitatively study biomolecule stability and binding
inferred← citeshttps://doi.org/10.1016/b978-0-443-24044-7.00012-2openalex-snapshot
Protein–protein interactions: Interaction mechanism, binding forces, measuring, and overall features
inferred← citeshttps://doi.org/10.1016/b978-0-443-29808-0.00067-4openalex-snapshot
Protein-protein interaction inhibitors in cancer
inferred← citeshttps://doi.org/10.1016/bs.apcsb.2016.06.002openalex-snapshot
Recent Advances in Computational Models for the Study of Protein–Peptide Interactions
inferred← citeshttps://doi.org/10.1016/j.ab.2021.114126openalex-snapshot
Probing coupled conformational transitions of intrinsically disordered proteins in their interactions with target proteins
inferred← citeshttps://doi.org/10.1016/j.abb.2017.02.006openalex-snapshot
Thermodynamics of interactions between mammalian cytochromes P450 and b5
inferred← citeshttps://doi.org/10.1016/j.antiviral.2006.06.009openalex-snapshot
Solution conformation of an immunodominant epitope in the hepatitis B virus preS2 surface antigen
inferred← citeshttps://doi.org/10.1016/j.bbagrm.2014.03.005openalex-snapshot
Small-molecule inhibitors of the Myc oncoprotein
inferred← citeshttps://doi.org/10.1016/j.bbapap.2003.09.019openalex-snapshot
Barley α-amylase/subtilisin inhibitor: structure, biophysics and protein engineering
inferred← citeshttps://doi.org/10.1016/j.bbapap.2007.04.013openalex-snapshot
Plasmodium falciparum dUTPase: Studies on protein stability and binding of deoxyuridine derivatives
inferred← citeshttps://doi.org/10.1016/j.bbapap.2024.141058openalex-snapshot
CDR identification, epitope mapping and binding affinity determination of novel monoclonal antibodies generated against human apolipoprotein B-100
inferred← citeshttps://doi.org/10.1016/j.bbrc.2008.03.101openalex-snapshot
Thermodynamic analysis reveals that GTP binding affects the interaction between the α- and γ-subunits of translation initiation factor 2
inferred← citeshttps://doi.org/10.1016/j.biocel.2006.05.012openalex-snapshot
Macromolecular crowding enhances the binding of superoxide dismutase to xanthine oxidase: Implications for protein–protein interactions in intracellular environments
inferred← citeshttps://doi.org/10.1016/j.biochi.2007.03.007openalex-snapshot
Effect of an Asp80Ala substitution on the binding of dUTP and dUMP to Trypanosoma cruzi dUTPase
inferred← citeshttps://doi.org/10.1016/j.bmc.2005.11.052openalex-snapshot
A credit-card library approach for disrupting protein–protein interactions
inferred← citeshttps://doi.org/10.1016/j.bmc.2012.09.053openalex-snapshot
Microwave assisted solid phase synthesis of highly functionalized N-alkylated oligobenzamide α-helix mimetics
inferred← citeshttps://doi.org/10.1016/j.bmc.2023.117211openalex-snapshot
Protein-protein interaction and interference of carcinogenesis by supramolecular modifications
inferred← citeshttps://doi.org/10.1016/j.bmcl.2013.12.003openalex-snapshot
α-Helix mimetics: Outwards and upwards
inferred← citeshttps://doi.org/10.1016/j.bpc.2011.09.003openalex-snapshot
Interaction of ERp57 with calreticulin: Analysis of complex formation and effects of vancomycin
inferred← citeshttps://doi.org/10.1016/j.bpc.2019.02.003openalex-snapshot
Cooperative energetic effects elicited by the yeast Shwachman-Diamond syndrome protein (Sdo1) and guanine nucleotides modulate the complex conformational landscape of the elongation factor-like 1 (Efl1) GTPase
inferred← citeshttps://doi.org/10.1016/j.bpj.2010.05.013openalex-snapshot
Attractive Protein-Polymer Interactions Markedly Alter the Effect of Macromolecular Crowding on Protein Association Equilibria
inferred← citeshttps://doi.org/10.1016/j.bpj.2012.07.013openalex-snapshot
Coarse-Grained Simulations of Protein-Protein Association: An Energy Landscape Perspective
inferred← citeshttps://doi.org/10.1016/j.cclet.2008.09.004openalex-snapshot
Protein surface recognition of the novel tetra-carboxylphenyl calix[4]arene to cytochrome c
inferred← citeshttps://doi.org/10.1016/j.cclet.2016.11.016openalex-snapshot
Thermoresponsive dendronized copolymers for protein recognitions based on biotin–avidin interaction
inferred← citeshttps://doi.org/10.1016/j.colsurfb.2024.114354openalex-snapshot
Impact of pH-dependent dynamics of human serum proteins on dialysis membranes: Cryptographic structure assessment, synchrotron imaging of membrane-protein adsorption, and molecular docking studies
inferred← citeshttps://doi.org/10.1016/j.cplett.2022.139916openalex-snapshot
Effect of monovalent salts on molecular interactions of globular protein (BSA) above its isoelectric point
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.04.003openalex-snapshot
Targeting protein-protein interaction interfaces in COVID-19 drug discovery
inferred← citeshttps://doi.org/10.1016/j.ejmech.2014.06.006openalex-snapshot
Inhibition of the HIF1α-p300 interaction by quinone- and indandione-mediated ejection of structural Zn(II)
inferred← citeshttps://doi.org/10.1016/j.eurpolymj.2015.03.069openalex-snapshot
Effect of hydrophobicity on protein–protein interactions
inferred← citeshttps://doi.org/10.1016/j.ica.2008.03.054openalex-snapshot
Adduct formation between ternary Pt(II)–amino acid–aromatic diimine complexes and flavin mononucleotide and its effect on redox properties
inferred← citeshttps://doi.org/10.1016/j.imbio.2016.10.010openalex-snapshot
Insights into the interaction of CD4 with anti-CD4 antibodies
inferred← citeshttps://doi.org/10.1016/j.immuni.2019.09.006openalex-snapshot
Butyrophilin-like 3 Directly Binds a Human Vγ4+ T Cell Receptor Using a Modality Distinct from Clonally-Restricted Antigen
inferred← citeshttps://doi.org/10.1016/j.jdent.2024.105457openalex-snapshot
Infiltration of salivary proteins into dentin during erosive processes
inferred← citeshttps://doi.org/10.1016/j.jmb.2004.04.038openalex-snapshot
Compensatory Energetic Mechanisms Mediating the Assembly of Signaling Complexes Between Interleukin-2 and its α, β, and γc Receptors
inferred← citeshttps://doi.org/10.1016/j.jmb.2004.10.086openalex-snapshot
Electrostatic Repulsion, Compensatory Mutations, and Long-range Non-additive Effects at the Dimerization Interface of the HIV Capsid Protein
inferred← citeshttps://doi.org/10.1016/j.jmb.2005.07.033openalex-snapshot
Kinetically Controlled Thermal Response of β2-Microglobulin Amyloid Fibrils
inferred← citeshttps://doi.org/10.1016/j.jmb.2005.10.057openalex-snapshot
Entropically Driven MHC Class I Recognition by Human Inhibitory Receptor Leukocyte Ig-like Receptor B1 (LILRB1/ILT2/CD85j)
inferred← citeshttps://doi.org/10.1016/j.jmb.2006.04.041openalex-snapshot
Thermodynamics of Folding and Binding in an Affibody:Affibody Complex
inferred← citeshttps://doi.org/10.1016/j.jmb.2007.03.023openalex-snapshot
Thermodynamic and Structural Basis for Transition-State Stabilization in Antibody-Catalyzed Hydrolysis
inferred← citeshttps://doi.org/10.1016/j.jmb.2009.06.020openalex-snapshot
Dissection of the DNA Mimicry of the Bacteriophage T7 Ocr Protein using Chemical Modification
inferred← citeshttps://doi.org/10.1016/j.jmb.2010.10.018openalex-snapshot
Binding Thermodynamics of Phosphorylated Inhibitors to Triosephosphate Isomerase and the Contribution of Electrostatic Interactions
inferred← citeshttps://doi.org/10.1016/j.jmb.2011.10.014openalex-snapshot
Structure-Based Design of a Protein Immunogen that Displays an HIV-1 gp41 Neutralizing Epitope
inferred← citeshttps://doi.org/10.1016/j.molimm.2006.10.002openalex-snapshot
Transition towards antigen-binding promiscuity of a monospecific antibody
inferred← citeshttps://doi.org/10.1016/j.molimm.2009.09.021openalex-snapshot
Kinetics and thermodynamics of interaction of coagulation factor VIII with a pathogenic human antibody
inferred← citeshttps://doi.org/10.1016/j.smim.2003.09.002openalex-snapshot
Linking molecular and cellular events in T-cell activation and synapse formation
inferred← citeshttps://doi.org/10.1016/j.str.2004.12.012openalex-snapshot
Magnitude of the Hydrophobic Effect at Central versus Peripheral Sites in Protein-Protein Interfaces
inferred← citeshttps://doi.org/10.1016/j.surfin.2026.110714openalex-snapshot
Predicting hemoglobin stability at MOF interfaces through the hemoglobin structural perturbation index
inferred← citeshttps://doi.org/10.1016/j.tca.2003.11.035openalex-snapshot
Unfolding of creatine kinase induced by acid studied by isothermal titration calorimetry and fluorescence spectroscopy
inferred← citeshttps://doi.org/10.1016/j.tca.2004.07.018openalex-snapshot
Thermodynamics of the interaction of xanthine oxidase with superoxide dismutase studied by isothermal titration calorimetry and fluorescence spectroscopy
inferred← citeshttps://doi.org/10.1016/j.tibs.2024.12.008openalex-snapshot
Structured protein domains enter the spotlight: modulators of biomolecular condensate form and function
inferred← citeshttps://doi.org/10.1016/j.toxicon.2007.09.012openalex-snapshot
Dynamics of saxitoxin binding to saxiphilin c-lobe reveals conformational change
inferred← citeshttps://doi.org/10.1016/j.virol.2006.04.030openalex-snapshot
Structural characteristics correlate with immune responses induced by HIV envelope glycoprotein vaccines
inferred← citeshttps://doi.org/10.1016/j.virol.2007.10.022openalex-snapshot
Comparative evaluation of trimeric envelope glycoproteins derived from subtype C and B HIV-1 R5 isolates
inferred← citeshttps://doi.org/10.1016/j.ydbio.2024.11.003openalex-snapshot
Beyond the heat shock pathway: Heat stress responses in Drosophila development
inferred← citeshttps://doi.org/10.1016/s0014-5793(00)01778-6openalex-snapshot
Convergent evolution with combinatorial peptides
inferred← citeshttps://doi.org/10.1016/s0022-2836(03)00610-7openalex-snapshot
Insights into Protein–Protein Binding by Binding Free Energy Calculation and Free Energy Decomposition for the Ras–Raf and Ras–RalGDS Complexes
inferred← citeshttps://doi.org/10.1016/s0022-2836(03)00670-3openalex-snapshot
Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations
inferred← citeshttps://doi.org/10.1016/s0022-2836(03)00783-6openalex-snapshot
Structure and Energetics of Protein–Protein Interactions: The Role of Conformational Heterogeneity in OMTKY3 Binding to Serine Proteases
inferred← citeshttps://doi.org/10.1016/s0065-3233(04)68008-9openalex-snapshot
NKG2D and Related Immunoreceptors
inferred← citeshttps://doi.org/10.1016/s0065-7743(03)38030-3openalex-snapshot
Chapter 29. Disruption of protein-protein interactions
inferred← citeshttps://doi.org/10.1016/s0076-6879(09)66015-8openalex-snapshot
Methods for Quantifying T cell Receptor Binding Affinities and Thermodynamics
inferred← citeshttps://doi.org/10.1016/s0079-6468(08)70097-3openalex-snapshot
7 Isothermal Titration Calorimetry in Drug Discovery
inferred← citeshttps://doi.org/10.1016/s0161-5890(02)00282-1openalex-snapshot
Thermodynamic and kinetic aspects of antibody evolution during the immune response to hapten
inferred← citeshttps://doi.org/10.1016/s0301-4622(03)00087-5openalex-snapshot
Analysis of thermal hysteresis protein hydration using the random network model
inferred← citeshttps://doi.org/10.1016/s0957-4166(99)00589-3openalex-snapshot
A comparison of biological and calorimetric analyses of multivalent glycodendrimer ligands for concanavalin A
inferred← citeshttps://doi.org/10.1016/s0960-894x(03)00551-1openalex-snapshot
Tetrabiphenylporphyrin-based receptors for protein surfaces show sub-nanomolar affinity and enhance unfolding
inferred← citeshttps://doi.org/10.1016/s0968-0004(02)02184-9openalex-snapshot
Intramolecular interactions at protein surfaces and their impact on protein function
inferred← citeshttps://doi.org/10.1016/s0969-2126(00)00157-xopenalex-snapshot
Insights into molybdenum cofactor deficiency provided by the crystal structure of the molybdenum cofactor biosynthesis protein MoaC
inferred← citeshttps://doi.org/10.1016/s0969-2126(03)00055-8openalex-snapshot
Structural and Energetic Aspects of Multispecific Immune Recognition by NKG2D
inferred← citeshttps://doi.org/10.1016/s0969-2126(99)80082-3openalex-snapshot
Crystal structure of the Atx1 metallochaperone protein at 1.02 Å resolution
inferred← citeshttps://doi.org/10.1016/s1074-5521(00)00106-xopenalex-snapshot
Antagonists of protein–protein interactions
inferred← citeshttps://doi.org/10.1016/s1074-7613(00)00061-3openalex-snapshot
Maturation of an Antibody Response Is Governed by Modulations in Flexibility of the Antigen-Combining Site
inferred← citeshttps://doi.org/10.1016/s1074-7613(00)80035-7openalex-snapshot
TCR Binding to Peptide-MHC Stabilizes a Flexible Recognition Interface
inferred← citeshttps://doi.org/10.1016/s1074-7613(01)00187-xopenalex-snapshot
Molecular Competition for NKG2D
inferred← citeshttps://doi.org/10.1016/s1074-7613(03)00320-0openalex-snapshot
Thermodynamic Analysis of Degenerate Recognition by the NKG2D Immunoreceptor
inferred← citeshttps://doi.org/10.1016/s1097-2765(03)00474-xopenalex-snapshot
Evidence that Structural Rearrangements and/or Flexibility during TCR Binding Can Contribute to T Cell Activation
inferred← citeshttps://doi.org/10.1016/s1367-5931(98)80031-8openalex-snapshot
Accessory factor—bZIP—DNA interactions
inferred← citeshttps://doi.org/10.1016/s1367-5931(98)80036-7openalex-snapshot
Inhibiting the assembly of protein—protein interfaces
inferred← citeshttps://doi.org/10.1016/s1631-0748(02)01408-xopenalex-snapshot
Design and synthesis of multiple-loop receptors based on a calix〚4〛arene scaffold for protein surface recognition
inferred← citeshttps://doi.org/10.1016/s1741-8372(04)02441-7openalex-snapshot
Tethering in early target assessment
inferred← citeshttps://doi.org/10.1016/s1748-0132(07)70085-3openalex-snapshot
The biomacromolecule-nanoparticle interface
inferred← citeshttps://doi.org/10.1017/s1462399408000641openalex-snapshot
Protein–protein interactions as targets for small-molecule therapeutics in cancer
inferred← citeshttps://doi.org/10.1021/acs.analchem.0c01643openalex-snapshot
Host–Guest Protein Assembly for Affinity Purification of Methyllysine Proteomes
inferred← citeshttps://doi.org/10.1021/acs.analchem.5b00999openalex-snapshot
Simultaneous Detection of Multiple Proteins that Bind to the Identical Ligand in Supported Lipid Bilayers
inferred← citeshttps://doi.org/10.1021/acs.biochem.0c00246openalex-snapshot
Thermodynamic and Kinetic Studies of the Interaction of Nuclear Receptor Coactivator-4 (NCOA4) with Human Ferritin
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