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A New Approach for Investigating the Molecular Recognition of Protein: Toward Structure-Based Drug Design Based on the 3D-RISM Theory

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Outgoing claims: the papers this work cites, builds on, or argues with.

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The statistical-mechanics study for the distribution of water molecules in aquaporin
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The role of quantum mechanics in structure-based drug design
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The electronic-structure theory of a large-molecular system in solution: Application to the intercalation of proflavine with solvated DNA
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Affinity of small ligands to myoglobin studied by the 3D-RISM theory
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First-principles realization of a van der Waals–Maxwell theory for water
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Three-dimensional density profiles of water in contact with a solute of arbitrary shape: a RISM approach
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Diversity of group types, regulation, and function of phospholipase A2.
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Facilitation of phospholipase A2 activity by mastoparans, a new class of mast cell degranulating peptides from wasp venom.
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Visualization of solvation structures in liquid mixtures
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Molecular basis for the Born model of ion solvation
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Water Molecules in a Protein Cavity Detected by a Statistical−Mechanical Theory
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Selective Ion-Binding by Protein Probed with the 3D-RISM Theory
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On the Proton Exclusion of Aquaporins: A Statistical Mechanics Study
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Proton Transport through the Influenza A M2 Channel: Three-Dimensional Reference Interaction Site Model Study
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Theoretical Study of CO Escaping Pathway in Myoglobin with the 3D-RISM Theory
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Ligand Mapping on Protein Surfaces by the 3D-RISM Theory: Toward Computational Fragment-Based Drug Design
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Selective Ion Binding by Protein Probed with the Statistical Mechanical Integral Equation Theory
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Three-Dimensional Distribution Function Theory for the Prediction of Protein−Ligand Binding Sites and Affinities: Application to the Binding of Noble Gases to Hen Egg-White Lysozyme in Aqueous Solution
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Molecular Selectivity in Aquaporin Channels Studied by the 3D- RISM Theory
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Molecular Recognition in Biomolecules Studied by Statistical-Mechanical Integral-Equation Theory of Liquids
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Monte Carlo Simulations for Proteins: Binding Affinities for Trypsin−Benzamidine Complexes via Free-Energy Perturbations
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Potential of Mean Force between Two Molecular Ions in a Polar Molecular Solvent: A Study by the Three-Dimensional Reference Interaction Site Model
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Molecular dynamics simulations of biomolecules
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Structure of a specific alcohol-binding site defined by the odorant binding protein LUSH from Drosophila melanogaster
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Theoretical study for partial molar volume of amino acids and polypeptides by the three-dimensional reference interaction site model
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Optimized Cluster Expansions for Classical Fluids. II. Theory of Molecular Liquids
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Efficient implementation of three-dimensional reference interaction site model self-consistent-field method: Application to solvatochromic shift calculations
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Comparison of simple potential functions for simulating liquid water
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Density functional theory of nonuniform polyatomic systems. I. General formulation
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Solvation structure and stability of peptides in aqueous solutions analyzed by the reference interaction site model theory
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Self-consistent description of a metal–water interface by the Kohn–Sham density functional theory and the three-dimensional reference interaction site model
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Potentials of mean force of simple ions in ambient aqueous solution. I. Three-dimensional reference interaction site model approach
inferredcites →https://doi.org/10.1074/jbc.272.11.7173openalex-snapshot
Localization of Structural Elements of Bee Venom Phospholipase A2 Involved in N-type Receptor Binding and Neurotoxicity
inferredcites →https://doi.org/10.1093/nar/gki586openalex-snapshot
MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm
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Approximation Methods in Classical Statistical Mechanics
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The Many Roles of Computation in Drug Discovery
inferredcites →https://doi.org/10.1201/ebk1439835920openalex-snapshot
Monte Carlo Simulation for the Pharmaceutical Industry

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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