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Analysis of Binding Affinities for Celecoxib Analogues with COX-1 and COX-2 from Combined Docking and Monte Carlo Simulations and Insight into the COX-2/COX-1 Selectivity

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Anti-inflammatory and Upper Gastrointestinal Effects of Celecoxib in Rheumatoid Arthritis
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Flexible docking using tabu search and an empirical estimate of binding affinity
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Preliminary study of the safety and efficacy of SC-58635, a novel cyclooxygenase 2 inhibitor: Efficacy and safety in two placebo-controlled trials in osteoarthritis and rheumatoid arthritis, and studies of gastrointestinal and platelet effects
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Computational Binding Studies of Orthogonal Cyclosporin‐Cyclophilin Pairs
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Carbene Analogues of Boron Stabilized by Neighboring BB Moieties: Doubly Aromatic Bishomotriboriranides
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Accuracy of free energies of hydration for organic molecules from 6‐31g*‐derived partial charges
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Class IV charge models: A new semiempirical approach in quantum chemistry
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Encyclopedia of Computational Chemistry
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The MIDAS display system
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COX-2 inhibitors
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Structural basis of the dynamic mechanism of ligand binding to cyclooxygenase
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Design of selective inhibitors of cyclooxygenase-2 as nonulcerogenic anti-inflammatory agents
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Monte Carlo Simulations for Proteins: Binding Affinities for Trypsin−Benzamidine Complexes via Free-Energy Perturbations
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The X-ray crystal structure of the membrane protein prostaglandin H2 synthase-1
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Structural basis for selective inhibition of cyclooxygenase-2 by anti-inflammatory agents
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Flexibility of the NSAID binding site in the structure of human cyclooxygenase-2
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A Single Amino Acid Difference between Cyclooxygenase-1 (COX-1) and −2 (COX-2) Reverses the Selectivity of COX-2 Specific Inhibitors
inferredcites →https://doi.org/10.1074/jbc.271.4.2179openalex-snapshot
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inferredcites →https://doi.org/10.1093/carcin/20.10.1939openalex-snapshot
Reduction of UV-induced skin tumors in hairless mice by selective COX-2 inhibition
inferredcites →https://doi.org/10.1124/mol.52.5.829openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.7892604openalex-snapshot
Demonstration of Positionally Disordered Water Within a Protein Hydrophobic Cavity by NMR
inferredcites →https://doi.org/10.1126/science.7892605openalex-snapshot
DNA Topoisomerase and Recombinase Activities in Nae I Restriction Endonuclease

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Separated topologies—A method for relative binding free energy calculations using orientational restraints
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Comparison of Accuracy and Convergence Rate between Equilibrium and Nonequilibrium Alchemical Transformations for Calculation of Relative Binding Free Energy
inferred← citeshttps://doi.org/10.1073/pnas.0803847105openalex-snapshot
Application of a polarizable force field to calculations of relative protein–ligand binding affinities
inferred← citeshttps://doi.org/10.1073/pnas.0913377107openalex-snapshot
Molecular basis of cyclooxygenase enzymes (COXs) selective inhibition
inferred← citeshttps://doi.org/10.1073/pnas.1303186110openalex-snapshot
Funnel metadynamics as accurate binding free-energy method
inferred← citeshttps://doi.org/10.1080/00397910701767023openalex-snapshot
Improved Protocol for Thorpe Reaction: Synthesis of 4‐Amino‐1‐arylpyrazole using Solid–Liquid Phase‐Transfer Conditions
inferred← citeshttps://doi.org/10.1080/07357907.2022.2139840openalex-snapshot
A Mechanistic Review of Methotrexate and Celecoxib as a Potential Metronomic Chemotherapy for Oral Squamous Cell Carcinoma
inferred← citeshttps://doi.org/10.1080/07391102.2004.10506969openalex-snapshot
A Free Energy Based Computational Pathway from Chemical Templates to Lead Compounds: A Case Study of COX-2 Inhibitors
inferred← citeshttps://doi.org/10.1080/07391102.2016.1165736openalex-snapshot
Deciphering the mechanism behind the varied binding activities of COXIBs through Molecular Dynamic Simulations, MM-PBSA binding energy calculations and per-residue energy decomposition studies
inferred← citeshttps://doi.org/10.1126/science.1096361openalex-snapshot
The Many Roles of Computation in Drug Discovery
inferred← citeshttps://doi.org/10.1371/journal.pone.0090637openalex-snapshot
The Bitter Barricading of Prostaglandin Biosynthesis Pathway: Understanding the Molecular Mechanism of Selective Cyclooxygenase-2 Inhibition by Amarogentin, a Secoiridoid Glycoside from Swertia chirayita
inferred← citeshttps://doi.org/10.1371/journal.pone.0103582openalex-snapshot
Simulating Metabolism with Statistical Thermodynamics
inferred← citeshttps://doi.org/10.22159/ijpps.2019v11i4.31891openalex-snapshot
3D QSAR AND DOCKING STUDY OF INDOLE DERIVATIVES AS SELECTIVE COX-2 INHIBITORS
inferred← citeshttps://doi.org/10.25004/ijpsdr.2023.150612openalex-snapshot
In-silico Studies of Heterocyclic Benzoxazole Derivatives as an Anticancer Agent: Molecular Docking, 2D and 3D QSAR
inferred← citeshttps://doi.org/10.25258/ijddt.13.3.49openalex-snapshot
An Overview of Arachidonic Acid Metabolic Pathway and Recent Updates on a Few Heterocyclic Derivatives showing COX-2 Inhibition
inferred← citeshttps://doi.org/10.31910/rudca.v17.n2.2014.253openalex-snapshot
Synthesis, characterization and antimicrobial activity of a pd(ii) complex with a 1,3-diphenylpyrazole-4-carboxaldehyde thiosemicarbazone ligand
inferred← citeshttps://doi.org/10.3389/fonc.2022.834681openalex-snapshot
Ferroptosis: Redox Imbalance and Hematological Tumorigenesis
inferred← citeshttps://doi.org/10.3390/molecules23112850openalex-snapshot
2-(4-Methylsulfonylphenyl)pyrimidines as Prospective Radioligands for Imaging Cyclooxygenase-2 with PET—Synthesis, Triage, and Radiolabeling
inferred← citeshttps://doi.org/10.3987/com-19-14048openalex-snapshot
One-Pot Cascade Synthesis of Pyrazole Based Isosteres of Valdecoxib by a [3+2] Cycloaddition Sequence and Evaluation of Their Cox Inhibitory Activity
inferred← citeshttps://doi.org/10.6023/cjoc20205031openalex-snapshot
Applications of Precise Chemistry in Drug Discovery★
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.