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Molecular Dynamics Simulations of the 30S Ribosomal Subunit Reveal a Preferred Tetracycline Binding Site

https://doi.org/10.1021/ja0741933

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Protonation Patterns in Tetracycline:Tet Repressor Recognition: Simulations and Experiments

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The Tetracyclines

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The Structural Basis for the Action of the Antibiotics Tetracycline, Pactamycin, and Hygromycin B on the 30S Ribosomal Subunit

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Free Energy Simulations Come of Age: Protein−Ligand Recognition

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An all-atom empirical energy function for the simulation of nucleic acids

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Molecular Dynamics Simulations and Thermodynamics Analysis of DNA−Drug Complexes. Minor Groove Binding between 4‘,6-Diamidino-2-phenylindole and DNA Duplexes in Solution

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All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins

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Pathogenic Escherichia coli

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Comparison of simple potential functions for simulating liquid water

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The Ribosomal Peptidyl Transferase Center: Structure, Function, Evolution, Inhibition

inferredcites →https://doi.org/10.1093/nar/gkh583openalex-snapshot

Mapping of the second tetracycline binding site on the ribosomal small subunit of E.coli

inferredcites →https://doi.org/10.1126/science.1060089openalex-snapshot

Crystal Structure of the Ribosome at 5.5 Å Resolution

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The Many Roles of Computation in Drug Discovery

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Tunable Quasi-Two-Dimensional Electron Gases in Oxide Heterostructures

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Structure of the 70 S Ribosome Complexed with mRNA and tRNA

inferredcites →https://doi.org/10.1128/aac.42.7.1702openalex-snapshot

16S rRNA Mutation Associated with Tetracycline Resistance in a Gram-Positive Bacterium

inferredcites →https://doi.org/10.1128/mmbr.65.2.232-260.2001openalex-snapshot

Tetracycline Antibiotics: Mode of Action, Applications, Molecular Biology, and Epidemiology of Bacterial Resistance

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