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Effects of Proteins on Protein Diffusion

https://doi.org/10.1021/ja102296k
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Using NMR to Distinguish Viscosity Effects from Nonspecific Protein Binding under Crowded Conditions
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Post-reductionist protein science, or putting Humpty Dumpty back together again
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MetJ repressor interactions with DNA probed by in-cell NMR
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Molecular evolution, intracellular organization, and the quinary structure of proteins.
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Crystal and molecular structure of chymotrypsin inhibitor 2 from barley seeds in complex with subtilisin Novo
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Tracer diffusion of globular proteins in concentrated protein solutions.
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Investigations on the Theory of the Brownian Movement
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Polymer Physics
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Protein Mobility in the Cytoplasm of Escherichia coli
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Ficoll is not a rigid sphere
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The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles
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Protein-Protein Association in Polymer Solutions: From Dilute to Semidilute to Concentrated
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Macromolecular Crowding and Size Effects on Probe Microviscosity
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The Pursuit of Perfect Packing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Dynamics of proteins in solution
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Automated Strong Cation-Exchange Cleanup To Remove Macromolecular Crowding Agents for Protein Hydrogen Exchange Mass Spectrometry
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Cosolute and Crowding Effects on a Side-By-Side Protein Dimer
inferred← citeshttps://doi.org/10.1021/acs.biochem.9b00154openalex-snapshot
Both Ligands and Macromolecular Crowders Preferentially Bind to Closed Conformations of Maltose Binding Protein
inferred← citeshttps://doi.org/10.1021/acs.biochem.9b01114openalex-snapshot
Net Charge and Nonpolar Content Guide the Identification of Folded and Prion Proteins
inferred← citeshttps://doi.org/10.1021/acs.biomac.2c01534openalex-snapshot
Diffusion NMR and Rheology of a Model Polymer in Bacterial Cell Lysate Crowders
inferred← citeshttps://doi.org/10.1021/acs.chemrev.1c00937openalex-snapshot
In-Cell Structural Biology by NMR: The Benefits of the Atomic Scale
inferred← citeshttps://doi.org/10.1021/acs.iecr.9b03432openalex-snapshot
Relating Collective Diffusion, Protein–Protein Interactions, and Viscosity of Highly Concentrated Monoclonal Antibodies through Dynamic Light Scattering
inferred← citeshttps://doi.org/10.1021/acs.jchemed.9b00399openalex-snapshot
Effects of Macromolecular Crowding on Biochemical Systems
inferred← citeshttps://doi.org/10.1021/acs.jcim.3c00012openalex-snapshot
GB1 Dimerization in Crowders: A Multiple Resolution Approach
inferred← citeshttps://doi.org/10.1021/acs.jpcb.0c05578openalex-snapshot
Protein–Peptide Binding Energetics under Crowded Conditions
inferred← citeshttps://doi.org/10.1021/acs.jpcb.1c00950openalex-snapshot
Cellular Sticking Can Strongly Reduce Complex Binding by Speeding Dissociation
inferred← citeshttps://doi.org/10.1021/acs.jpcb.1c04473openalex-snapshot
Fluorescence Anisotropy Decays and Microscale-Volume Viscometry Reveal the Compaction of Ribosome-Bound Nascent Proteins
inferred← citeshttps://doi.org/10.1021/acs.jpcb.3c00253openalex-snapshot
Optimized OPEP Force Field for Simulation of Crowded Protein Solutions
inferred← citeshttps://doi.org/10.1021/acs.jpcb.4c06877openalex-snapshot
Diffusion and Viscosity in Mixed Protein Solutions
inferred← citeshttps://doi.org/10.1021/acs.jpcb.6b06248openalex-snapshot
Understanding Protein Diffusion in Polymer Solutions: A Hydration with Depletion Model
inferred← citeshttps://doi.org/10.1021/acs.jpcb.7b01306openalex-snapshot
Fluorescence Dynamics of a FRET Probe Designed for Crowding Studies
inferred← citeshttps://doi.org/10.1021/acs.jpcb.7b03570openalex-snapshot
Crowding in Cellular Environments at an Atomistic Level from Computer Simulations
inferred← citeshttps://doi.org/10.1021/acs.jpcb.7b03786openalex-snapshot
Cosolutes, Crowding, and Protein Folding Kinetics
inferred← citeshttps://doi.org/10.1021/acs.jpcb.7b04107openalex-snapshot
Time-Resolved Linear Dichroism Measurements of Carbonmonoxy Myoglobin as a Probe of the Microviscosity in Crowded Environments
inferred← citeshttps://doi.org/10.1021/acs.jpcb.7b08785openalex-snapshot
Slow-Down in Diffusion in Crowded Protein Solutions Correlates with Transient Cluster Formation
inferred← citeshttps://doi.org/10.1021/acs.jpcb.8b07901openalex-snapshot
Weak Shape Anisotropy Leads to a Nonmonotonic Contribution to Crowding, Impacting Protein Dynamics under Physiologically Relevant Conditions
inferred← citeshttps://doi.org/10.1021/acs.jpcb.8b09829openalex-snapshot
Crowding Effects on Energy-Transfer Efficiencies of Hetero-FRET Probes As Measured Using Time-Resolved Fluorescence Anisotropy
inferred← citeshttps://doi.org/10.1021/acs.jpcb.9b00895openalex-snapshot
Rotational Diffusion of Proteins in Nanochannels
inferred← citeshttps://doi.org/10.1021/acs.jpcb.9b01239openalex-snapshot
Impact of Molecular Crowding on Translational Mobility and Conformational Properties of Biological Macromolecules
inferred← citeshttps://doi.org/10.1021/acs.jpcb.9b02162openalex-snapshot
Positively Charged Tags Impede Protein Mobility in Cells as Quantified by 19F NMR
inferred← citeshttps://doi.org/10.1021/acs.jpcb.9b09478openalex-snapshot
Computationally Modeling Electrostatic Binding Energetics in a Crowded, Dynamic Environment: Physical Insights from a Peptide–DNA System
inferred← citeshttps://doi.org/10.1021/acs.jpclett.2c00316openalex-snapshot
Quantification of Entropic Excluded Volume Effects Driving Crowding-Induced Collapse and Folding of a Disordered Protein
inferred← citeshttps://doi.org/10.1021/acs.jpclett.2c02723openalex-snapshot
Characterizing Transient Protein–Protein Interactions by Trp-Cys Quenching and Computer Simulations
inferred← citeshttps://doi.org/10.1021/acs.jpclett.3c03421openalex-snapshot
Entropy Tug-of-War Determines Solvent Effects in the Liquid–Liquid Phase Separation of a Globular Protein
inferred← citeshttps://doi.org/10.1021/acs.jpclett.9b00345openalex-snapshot
Protein Short-Time Diffusion in a Naturally Crowded Environment
inferred← citeshttps://doi.org/10.1021/acs.langmuir.2c01397openalex-snapshot
Cell-Size Space Regulates the Behavior of Confined Polymers: From Nano- and Micromaterials Science to Biology
inferred← citeshttps://doi.org/10.1021/acs.macromol.4c00182openalex-snapshot
Dynamics of Single-Chain Nanoparticles under Crowding: A Neutron Spin Echo Study
inferred← citeshttps://doi.org/10.1021/acs.macromol.7b02695openalex-snapshot
Diffusion of Sticky Nanoparticles in a Polymer Melt: Crossover from Suppressed to Enhanced Transport
inferred← citeshttps://doi.org/10.1021/acsabm.9b00892openalex-snapshot
Macromolecular Crowding and Confinement Effect on the Growth of DNA Nanotubes in Dextran and Hyaluronic Acid Media
inferred← citeshttps://doi.org/10.1021/acsapm.0c00534openalex-snapshot
Polymer Domains Control Diffusion in Protein–Polymer Conjugate Biosensors
inferred← citeshttps://doi.org/10.1021/acschembio.1c00024openalex-snapshot
Osmolytes Can Destabilize Proteins in Cells by Modulating Electrostatics and Quinary Interactions
inferred← citeshttps://doi.org/10.1021/acsmacrolett.5c00016openalex-snapshot
Hydrodynamically Enhanced Brownian Motion in Flowing Polymer Solutions
inferred← citeshttps://doi.org/10.1021/acsomega.7b00018openalex-snapshot
Influence of Hyperglycemic Conditions on Self-Association of the Alzheimer’s Amyloid β (Aβ1–42) Peptide
inferred← citeshttps://doi.org/10.1021/acsomega.9b02835openalex-snapshot
Rotational and Translational Diffusion of Proteins as a Function of Concentration
inferred← citeshttps://doi.org/10.1021/ar300342fopenalex-snapshot
SedNMR: On the Edge between Solution and Solid-State NMR
inferred← citeshttps://doi.org/10.1021/bi100727yopenalex-snapshot
Volume Exclusion and Soft Interaction Effects on Protein Stability under Crowded Conditions
inferred← citeshttps://doi.org/10.1021/bi201287eopenalex-snapshot
Exploring Weak, Transient Protein–Protein Interactions in Crowded In Vivo Environments by In-Cell Nuclear Magnetic Resonance Spectroscopy
inferred← citeshttps://doi.org/10.1021/bi300909qopenalex-snapshot
Unexpected Effects of Macromolecular Crowding on Protein Stability
inferred← citeshttps://doi.org/10.1021/bi4016346openalex-snapshot
Protein Crowder Charge and Protein Stability
inferred← citeshttps://doi.org/10.1021/bi500079uopenalex-snapshot
Strategies for Protein NMR in Escherichia coli
inferred← citeshttps://doi.org/10.1021/cr400695popenalex-snapshot
Physicochemical Properties of Cells and Their Effects on Intrinsically Disordered Proteins (IDPs)
inferred← citeshttps://doi.org/10.1021/ct500124ropenalex-snapshot
Transient Effects of Excluded Volume Interactions on the Translational Diffusion of Hydrodynamically Anisotropic Molecules
inferred← citeshttps://doi.org/10.1021/ct501015hopenalex-snapshot
Protein Simulations in Fluids: Coupling the OPEP Coarse-Grained Force Field with Hydrodynamics
inferred← citeshttps://doi.org/10.1021/ja200067popenalex-snapshot
Protein Crowding Tunes Protein Stability
inferred← citeshttps://doi.org/10.1021/ja201206topenalex-snapshot
Macromolecular Crowding Fails To Fold a Globular Protein in Cells
inferred← citeshttps://doi.org/10.1021/ja305300mopenalex-snapshot
Macromolecular Crowding and Protein Stability
inferred← citeshttps://doi.org/10.1021/ja3112912openalex-snapshot
Nonlinear Scaling of Surface Water Diffusion with Bulk Water Viscosity of Crowded Solutions
inferred← citeshttps://doi.org/10.1021/ja405244vopenalex-snapshot
Molecular Crowding Drives Active Pin1 into Nonspecific Complexes with Endogenous Proteins Prior to Substrate Recognition
inferred← citeshttps://doi.org/10.1021/jacs.1c10154openalex-snapshot
Quantifying Protein Electrostatic Interactions in Cells by Nuclear Magnetic Resonance Spectroscopy
inferred← citeshttps://doi.org/10.1021/jacs.5b07898openalex-snapshot
Associative Interactions in Crowded Solutions of Biopolymers Counteract Depletion Effects
inferred← citeshttps://doi.org/10.1021/jacs.5c02034openalex-snapshot
Boosting Reaction Kinetics with Viscous Nanowire Dispersions
inferred← citeshttps://doi.org/10.1021/jacs.5c05617openalex-snapshot
NMR Assessment of the High Order Structure of Biological Therapeutics in Erythrocytes Provides a Tool for Drug Delivery Design
inferred← citeshttps://doi.org/10.1021/jacs.6b06615openalex-snapshot
Coupling and Decoupling of Rotational and Translational Diffusion of Proteins under Crowding Conditions
inferred← citeshttps://doi.org/10.1021/jacs.6b11058openalex-snapshot
Quinary Interactions Weaken the Electric Field Generated by Protein Side-Chain Charges in the Cell-like Environment
inferred← citeshttps://doi.org/10.1021/jacs.9b04435openalex-snapshot
Characterization of Residue Specific Protein Folding and Unfolding Dynamics in Cells
inferred← citeshttps://doi.org/10.1021/jp209302eopenalex-snapshot
Variable Interactions between Protein Crowders and Biomolecular Solutes Are Important in Understanding Cellular Crowding
inferred← citeshttps://doi.org/10.1021/jp212532hopenalex-snapshot
Atomic Detail Brownian Dynamics Simulations of Concentrated Protein Solutions with a Mean Field Treatment of Hydrodynamic Interactions
inferred← citeshttps://doi.org/10.1021/jp4126705openalex-snapshot
Dissecting the Effects of Concentrated Carbohydrate Solutions on Protein Diffusion, Hydration, and Internal Dynamics
inferred← citeshttps://doi.org/10.1021/jp5011617openalex-snapshot
Dynamics in Crowded Environments: Is Non-Gaussian Brownian Diffusion Normal?
inferred← citeshttps://doi.org/10.1021/jp5059885openalex-snapshot
Wanted: Scalable Tracers for Diffusion Measurements
inferred← citeshttps://doi.org/10.1021/jz3010915openalex-snapshot
Disordered Protein Diffusion under Crowded Conditions
inferred← citeshttps://doi.org/10.1021/ma401843hopenalex-snapshot
A Minimalist Model of Protein Diffusion and Interactions: The Green Fluorescent Protein within the Cytoplasm
inferred← citeshttps://doi.org/10.1021/nl2008218openalex-snapshot
Comparative Analysis of Viscosity of Complex Liquids and Cytoplasm of Mammalian Cells at the Nanoscale
inferred← citeshttps://doi.org/10.1038/s41467-021-24349-5openalex-snapshot
Reduced efficacy of a Src kinase inhibitor in crowded protein solution
inferred← citeshttps://doi.org/10.1038/s41467-022-33154-7openalex-snapshot
Resolving molecular diffusion and aggregation of antibody proteins with megahertz X-ray free-electron laser pulses
inferred← citeshttps://doi.org/10.1038/s41565-025-01941-0openalex-snapshot
Ballistic diffusion fronts in biomolecular condensates
inferred← citeshttps://doi.org/10.1038/s41598-021-89987-7openalex-snapshot
Quantitative evaluation of macromolecular crowding environment based on translational and rotational diffusion using polarization dependent fluorescence correlation spectroscopy
inferred← citeshttps://doi.org/10.1039/9781849734851-00196openalex-snapshot
Nuclear spin relaxation in liquids and gases
inferred← citeshttps://doi.org/10.1039/c1cp22978hopenalex-snapshot
NMR properties of sedimented solutes
inferred← citeshttps://doi.org/10.1039/c2fd20009kopenalex-snapshot
Crowding effects on the small, fast-folding protein λ6–85
inferred← citeshttps://doi.org/10.1039/c5sm00101copenalex-snapshot
Tracking structural transitions of bovine serum albumin in surfactant solutions by fluorescence correlation spectroscopy and fluorescence lifetime analysis
inferred← citeshttps://doi.org/10.1039/c6cp01056copenalex-snapshot
Transient binding accounts for apparent violation of the generalized Stokes–Einstein relation in crowded protein solutions
inferred← citeshttps://doi.org/10.1039/c7cp04066kopenalex-snapshot
Enzymatic activity inside a DNA/peptide complex
inferred← citeshttps://doi.org/10.1039/c7cp07047kopenalex-snapshot
A new scaling for the rotational diffusion of molecular probes in polymer solutions
inferred← citeshttps://doi.org/10.1039/c8cp02144aopenalex-snapshot
Identification of the binding site between bovine serum albumin and ultrasmall SiC fluorescent biomarkers
inferred← citeshttps://doi.org/10.1039/c8cp03873bopenalex-snapshot
Rotational and translational diffusion of size-dependent fluorescent probes in homogeneous and heterogeneous environments
inferred← citeshttps://doi.org/10.1039/c8cp06142dopenalex-snapshot
Effect of protein–protein interactions and solvent viscosity on the rotational diffusion of proteins in crowded environments
inferred← citeshttps://doi.org/10.1039/c8cs00034dopenalex-snapshot
Effects of in vivo conditions on amyloid aggregation
inferred← citeshttps://doi.org/10.1039/c8sm02292eopenalex-snapshot
Study of active Brownian particle diffusion in polymer solutions
inferred← citeshttps://doi.org/10.1039/c9sm01071hopenalex-snapshot
Self-diffusion of a highly concentrated monoclonal antibody by fluorescence correlation spectroscopy: insight into protein–protein interactions and self-association
inferred← citeshttps://doi.org/10.1039/d3cp04733dopenalex-snapshot
Two-photon excited-state dynamics of mEGFP-linker-mScarlet-I crowding biosensor in controlled environments
inferred← citeshttps://doi.org/10.1039/d4an00467aopenalex-snapshot
Mitochondria-targeted fluorescent probe for simultaneously imaging viscosity and sulfite in inflammation models
inferred← citeshttps://doi.org/10.1039/d4cp03850aopenalex-snapshot
Translational diffusion, molecular brightness, and energy transfer analysis of mEGFP-linker-mScarlet–I crowding biosensor using fluorescence correlation spectroscopy
inferred← citeshttps://doi.org/10.1039/d4sm00422aopenalex-snapshot
Rotational and translational diffusion of biomolecules in complex liquids and HeLa cells
inferred← citeshttps://doi.org/10.1042/bst20250108openalex-snapshot
Mimetics of in-cell and subcellular crowding and solvation for protein folding
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