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Plug-and-Play Fluorophores Extend the Spectral Properties of Spinach

https://doi.org/10.1021/ja410819x
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/s1097-2765(00)80143-4openalex-snapshot
Localization of ASH1 mRNA Particles in Living Yeast
inferredcites →https://doi.org/10.1021/bi400549sopenalex-snapshot
Thermodynamics and Kinetics of Adaptive Binding in the Malachite Green RNA Aptamer
inferredcites →https://doi.org/10.1021/ja037994oopenalex-snapshot
Aptamers Switch on Fluorescence of Triphenylmethane Dyes
inferredcites →https://doi.org/10.1021/ja311960gopenalex-snapshot
RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messengers Cyclic di-GMP and Cyclic AMP-GMP
inferredcites →https://doi.org/10.1021/ja407142fopenalex-snapshot
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inferredcites →https://doi.org/10.1021/jp111593xopenalex-snapshot
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inferredcites →https://doi.org/10.1021/ol702920eopenalex-snapshot
Synthesis of New Fluorogenic Cyanine Dyes and Incorporation into RNA Fluoromodules
inferredcites →https://doi.org/10.1021/sb400089copenalex-snapshot
The Spinach RNA Aptamer as a Characterization Tool for Synthetic Biology
inferredcites →https://doi.org/10.1038/nmeth.1321openalex-snapshot
Imaging intracellular RNA distribution and dynamics in living cells
inferredcites →https://doi.org/10.1038/nmeth.2568openalex-snapshot
Imaging bacterial protein expression using genetically encoded RNA sensors
inferredcites →https://doi.org/10.1038/nmeth.2701openalex-snapshot
A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat–containing RNA
inferredcites →https://doi.org/10.1038/sj.emboj.7600341openalex-snapshot
Visualization of RNA–protein interactions in living cells: FMRP and IMP1 interact on mRNAs
inferredcites →https://doi.org/10.1039/b808449aopenalex-snapshot
Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: a blue fluorescent RNA
inferredcites →https://doi.org/10.1039/c2cc34379gopenalex-snapshot
Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy
inferredcites →https://doi.org/10.1126/science.1207339openalex-snapshot
RNA Mimics of Green Fluorescent Protein
inferredcites →https://doi.org/10.1126/science.1218298openalex-snapshot
Fluorescence Imaging of Cellular Metabolites with RNA

What points at this work

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Guanidine Biosensors Enable Comparison of Cellular Turn-on Kinetics of Riboswitch-Based Biosensor and Reporter
inferred← citeshttps://doi.org/10.1021/acssynbio.3c00599openalex-snapshot
Evaluating DFHBI-Responsive RNA Light-Up Aptamers as Fluorescent Reporters for Gene Expression
inferred← citeshttps://doi.org/10.1021/acssynbio.4c00009openalex-snapshot
Investigating the Effect of RNA Scaffolds on the Multicolor Fluorogenic Aptamer Pepper in Different Bacterial Species
inferred← citeshttps://doi.org/10.1021/acssynbio.7b00059openalex-snapshot
A Fluorescent Split Aptamer for Visualizing RNA–RNA Assembly In Vivo
inferred← citeshttps://doi.org/10.1021/acssynbio.8b00153openalex-snapshot
Fluorescent Guide RNAs Facilitate Development of Layered Pol II-Driven CRISPR Circuits
inferred← citeshttps://doi.org/10.1021/cb500499xopenalex-snapshot
RNA Mango Aptamer-Fluorophore: A Bright, High-Affinity Complex for RNA Labeling and Tracking
inferred← citeshttps://doi.org/10.1021/cbmi.5c00007openalex-snapshot
Advancing Single-Molecule Biophysics: Next-Generation Organic Fluorophores with Tailored Labeling Strategies
inferred← citeshttps://doi.org/10.1021/ja508478xopenalex-snapshot
Broccoli: Rapid Selection of an RNA Mimic of Green Fluorescent Protein by Fluorescence-Based Selection and Directed Evolution
inferred← citeshttps://doi.org/10.1021/jacs.2c01760openalex-snapshot
Genetically Encoded Double-Stranded DNA-Based Nanostructure Folded by a Covalently Bivalent CRISPR/dCas System
inferred← citeshttps://doi.org/10.1021/jacs.5b00275openalex-snapshot
RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messenger Cyclic di-AMP
inferred← citeshttps://doi.org/10.1021/jacs.5c07380openalex-snapshot
Photoactivatable RNA Tags for Subcellular Photolabeling of RNA
inferred← citeshttps://doi.org/10.1021/jacs.5c16404openalex-snapshot
Lighting Up Biology: GFP-Inspired Fluorescent Probes for Sensing and Imaging
inferred← citeshttps://doi.org/10.1021/jacs.6c13298openalex-snapshot
Small-Molecule-Directed RNA Modification via Proximity-Driven Catalysis
inferred← citeshttps://doi.org/10.1021/jacs.7b04211openalex-snapshot
Fluoromodules Consisting of a Promiscuous RNA Aptamer and Red or Blue Fluorogenic Cyanine Dyes: Selection, Characterization, and Bioimaging
inferred← citeshttps://doi.org/10.1021/jacs.9b02697openalex-snapshot
SiRA: A Silicon Rhodamine-Binding Aptamer for Live-Cell Super-Resolution RNA Imaging
inferred← citeshttps://doi.org/10.1038/nchembio.1561openalex-snapshot
A G-quadruplex–containing RNA activates fluorescence in a GFP-like fluorophore
inferred← citeshttps://doi.org/10.1038/nchembio.2477openalex-snapshot
Imaging RNA polymerase III transcription using a photostable RNA–fluorophore complex
inferred← citeshttps://doi.org/10.1038/nmeth.2865openalex-snapshot
Expanding Spinach2's spectral properties
inferred← citeshttps://doi.org/10.1038/nmeth.3433openalex-snapshot
Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display
inferred← citeshttps://doi.org/10.1038/nsmb.2865openalex-snapshot
Structural basis for activity of highly efficient RNA mimics of green fluorescent protein
inferred← citeshttps://doi.org/10.1038/s41467-017-02435-xopenalex-snapshot
Development of a genetically encodable FRET system using fluorescent RNA aptamers
inferred← citeshttps://doi.org/10.1038/s41467-018-04691-xopenalex-snapshot
Modular cell-internalizing aptamer nanostructure enables targeted delivery of large functional RNAs in cancer cell lines
inferred← citeshttps://doi.org/10.1038/s41467-019-12299-yopenalex-snapshot
Nanomechanics and co-transcriptional folding of Spinach and Mango
inferred← citeshttps://doi.org/10.1038/s41467-020-17497-7openalex-snapshot
A protein-independent fluorescent RNA aptamer reporter system for plant genetic engineering
inferred← citeshttps://doi.org/10.1038/s41467-020-18911-wopenalex-snapshot
Incorporation of sensing modalities into de novo designed fluorescence-activating proteins
inferred← citeshttps://doi.org/10.1038/s41467-021-23932-0openalex-snapshot
Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine
inferred← citeshttps://doi.org/10.1038/s41467-023-43552-0openalex-snapshot
In vivo imaging of mitochondrial DNA mutations using an integrated nano Cas12a sensor
inferred← citeshttps://doi.org/10.1038/s41467-024-55093-1openalex-snapshot
Near-infrared fluorogenic RNA for in vivo imaging and sensing
inferred← citeshttps://doi.org/10.1038/s41467-025-62973-7openalex-snapshot
Controlling intermolecular base pairing in Drosophila germ granules by mRNA folding and its implications in fly development
inferred← citeshttps://doi.org/10.1038/s41565-019-0517-8openalex-snapshot
Computational design of three-dimensional RNA structure and function
inferred← citeshttps://doi.org/10.1038/s41586-023-06229-8openalex-snapshot
Intricate 3D architecture of a DNA mimic of GFP
inferred← citeshttps://doi.org/10.1038/s41587-019-0249-1openalex-snapshot
Visualizing RNA dynamics in live cells with bright and stable fluorescent RNAs
inferred← citeshttps://doi.org/10.1038/s41589-019-0381-8openalex-snapshot
A dimerization-based fluorogenic dye-aptamer module for RNA imaging in live cells
inferred← citeshttps://doi.org/10.1038/s41589-021-00884-6openalex-snapshot
Structure-based investigation of fluorogenic Pepper aptamer
inferred← citeshttps://doi.org/10.1038/s41589-021-00925-0openalex-snapshot
Repurposing an adenine riboswitch into a fluorogenic imaging and sensing tag
inferred← citeshttps://doi.org/10.1038/s41589-024-01629-xopenalex-snapshot
Imaging the dynamics of messenger RNA with a bright and stable green fluorescent RNA
inferred← citeshttps://doi.org/10.1038/s41598-020-61573-3openalex-snapshot
Development of encoded Broccoli RNA aptamers for live cell imaging of alphavirus genomic and subgenomic RNAs
inferred← citeshttps://doi.org/10.1038/s41598-021-85091-yopenalex-snapshot
Photophysics of DFHBI bound to RNA aptamer Baby Spinach
inferred← citeshttps://doi.org/10.1038/s42003-022-03178-2openalex-snapshot
In vitro characterisation of the MS2 RNA polymerase complex reveals host factors that modulate emesviral replicase activity
inferred← citeshttps://doi.org/10.1039/c5mb00751hopenalex-snapshot
Cyclic dinucleotide detection with riboswitch–G-quadruplex hybrid
inferred← citeshttps://doi.org/10.1039/c6cs00675bopenalex-snapshot
Recent advances in high-performance fluorescent and bioluminescent RNA imaging probes
inferred← citeshttps://doi.org/10.1039/c6ob01612jopenalex-snapshot
Design and characterization of red fluorogenic push–pull chromophores holding great potential for bioimaging and biosensing
inferred← citeshttps://doi.org/10.1039/c6sc02031copenalex-snapshot
Photoacid behaviour in a fluorinated green fluorescent protein chromophore: ultrafast formation of anion and zwitterion states
inferred← citeshttps://doi.org/10.1039/c8nj01598hopenalex-snapshot
N -Arylation of ferrocenyl 2,4-thiazolidinedione conjugates via a copper-catalysed Chan–Lam cross coupling reaction with aryl boronic acids and their optoelectronic properties
inferred← citeshttps://doi.org/10.1039/c8sc03426eopenalex-snapshot
A universal method for sensitive and cell-free detection of CRISPR-associated nucleases
inferred← citeshttps://doi.org/10.1039/c9an01825eopenalex-snapshot
Progress in the isolation of aptamers to light-up the dyes and the applications
inferred← citeshttps://doi.org/10.1039/c9tb02668aopenalex-snapshot
Genetically encoded light-up RNA aptamers and their applications for imaging and biosensing
inferred← citeshttps://doi.org/10.1039/d0cc07042dopenalex-snapshot
A Broccoli aptamer chimera yields a fluorescent K + sensor spanning physiological concentrations
inferred← citeshttps://doi.org/10.1039/d0nr08301aopenalex-snapshot
Genetically encoded RNA nanodevices for cellular imaging and regulation
inferred← citeshttps://doi.org/10.1039/d1cs00239bopenalex-snapshot
Twisted intramolecular charge transfer (TICT) and twists beyond TICT: from mechanisms to rational designs of bright and sensitive fluorophores
inferred← citeshttps://doi.org/10.1039/d1mo00085copenalex-snapshot
Application of fluorescent turn-on aptamers in RNA studies
inferred← citeshttps://doi.org/10.1039/d2sc04656copenalex-snapshot
Live-cell RNA imaging using the CRISPR-dCas13 system with modified sgRNAs appended with fluorescent RNA aptamers
inferred← citeshttps://doi.org/10.1039/d3ay00699aopenalex-snapshot
Construction of a novel fluorescent DNA aptasensor for the fast-response and sensitive detection of copper ions in industrial sewage
inferred← citeshttps://doi.org/10.1039/d3cs00030copenalex-snapshot
Harmonizing the growing fluorogenic RNA aptamer toolbox for RNA detection and imaging
inferred← citeshttps://doi.org/10.1039/d4nh00186aopenalex-snapshot
Advancements in molecular disassembly of optical probes: a paradigm shift in sensing, bioimaging, and therapeutics
inferred← citeshttps://doi.org/10.1073/pnas.1504354112openalex-snapshot
Imaging metabolite dynamics in living cells using a Spinach-based riboswitch
inferred← citeshttps://doi.org/10.1080/08927022.2017.1315769openalex-snapshot
A theoretical study on the optical absorption of green fluorescent protein chromophore in solutions
inferred← citeshttps://doi.org/10.1080/10408347.2021.1907735openalex-snapshot
Recent Development of Fluorescent Light-Up RNA Aptamers
inferred← citeshttps://doi.org/10.1088/0022-3727/49/23/233001openalex-snapshot
Tracking single mRNA molecules in live cells
inferred← citeshttps://doi.org/10.1088/2050-6120/3/4/042007openalex-snapshot
Fluorogen-based reporters for fluorescence imaging: a review
inferred← citeshttps://doi.org/10.1091/mbc.e16-07-0504openalex-snapshot
Genetically encoded fluorescent tags
inferred← citeshttps://doi.org/10.1093/femsyr/foy093openalex-snapshot
Live-cell imaging of small nucleolar RNA tagged with the broccoli aptamer in yeast
inferred← citeshttps://doi.org/10.1093/nar/gkac368openalex-snapshot
Inert Pepper aptamer-mediated endogenous mRNA recognition and imaging in living cells
inferred← citeshttps://doi.org/10.1093/nar/gkad224openalex-snapshot
RNA origami scaffolds facilitate cryo-EM characterization of a Broccoli–Pepper aptamer FRET pair
inferred← citeshttps://doi.org/10.1093/nar/gkae551openalex-snapshot
Multiplexed sequential imaging in living cells with orthogonal fluorogenic RNA aptamer/dye pairs
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