On the public citation graph

Natively Unfolded Protein Stability as a Coil-to-Globule Transition in Charge/Hydropathy Space

0 signed · 176 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1097-0134(20001115)41:3<415::aid-prot130>3.0.co;2-7openalex-snapshot

Why are ?natively unfolded? proteins unstructured under physiologic conditions?

inferredcites →https://doi.org/10.1002/1097-0134(20010101)42:1<38::aid-prot50>3.0.co;2-3openalex-snapshot

Sequence complexity of disordered protein

inferredcites →https://doi.org/10.1006/jmbi.1999.3110openalex-snapshot

Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

inferredcites →https://doi.org/10.1006/jmbi.2000.3612openalex-snapshot

Directed evolution study of temperature adaptation in a psychrophilic enzyme 1 1Edited by J. A. Wells

inferredcites →https://doi.org/10.1016/0020-711x(94)90020-5openalex-snapshot

Principles of biochemistry

inferredcites →https://doi.org/10.1016/0022-2836(82)90515-0openalex-snapshot

A simple method for displaying the hydropathic character of a protein

inferredcites →https://doi.org/10.1016/0097-8485(93)85006-xopenalex-snapshot

Statistics of local complexity in amino acid sequences and sequence databases

inferredcites →https://doi.org/10.1016/0167-7799(94)90093-0openalex-snapshot

Crystallography made crystal clear: A guide for users of macromolecular models

inferredcites →https://doi.org/10.1016/b978-0-12-267351-1.x5000-7openalex-snapshot

Understanding Molecular Simulation: From Algorithms to Applications

inferredcites →https://doi.org/10.1016/j.febslet.2004.09.036openalex-snapshot

Reduced amino acid alphabet is sufficient to accurately recognize intrinsically disordered protein

inferredcites →https://doi.org/10.1016/j.sbi.2005.01.002openalex-snapshot

Natively unfolded proteins

inferredcites →https://doi.org/10.1016/j.str.2003.10.002openalex-snapshot

Protein Disorder Prediction

inferredcites →https://doi.org/10.1016/s0006-3495(03)74771-7openalex-snapshot

The Role of the Unfolded State in Hairpin Stability

inferredcites →https://doi.org/10.1016/s0022-2836(02)00848-3openalex-snapshot

p53 Contains Large Unstructured Regions in its Native State

inferredcites →https://doi.org/10.1016/s0079-6107(01)00012-8openalex-snapshot

Predicting properties of intrinsically unstructured proteins

inferredcites →https://doi.org/10.1021/bi00327a032openalex-snapshot

Theory for the folding and stability of globular proteins

inferredcites →https://doi.org/10.1021/bi00439a019openalex-snapshot

Thermal stabilities of globular proteins

inferredcites →https://doi.org/10.1021/bi00457a023openalex-snapshot

Charge effects on folded and unfolded proteins

inferredcites →https://doi.org/10.1021/bi012159+openalex-snapshot

Intrinsic Disorder and Protein Function

inferredcites →https://doi.org/10.1021/bi047993oopenalex-snapshot

Comparing and Combining Predictors of Mostly Disordered Proteins

inferredcites →https://doi.org/10.1021/j100355a033openalex-snapshot

Free energy of electrical double layers: entropy of adsorbed ions and the binding polynomial

inferredcites →https://doi.org/10.1021/ja00334a030openalex-snapshot

Optimized intermolecular potential functions for liquid hydrocarbons

inferredcites →https://doi.org/10.1021/ja010446vopenalex-snapshot

Molecular Dynamics Simulations of Pressure Effects on Hydrophobic Interactions

inferredcites →https://doi.org/10.1021/ja057874bopenalex-snapshot

Design of a Hyperstable Protein by Rational Consideration of Unfolded State Interactions

inferredcites →https://doi.org/10.1021/ja962325eopenalex-snapshot

Turn Residue Sequence Determines β-Hairpin Conformation in Designed Peptides

inferredcites →https://doi.org/10.1021/jp0670844openalex-snapshot

Counterion Condensation on Charged Spheres, Cylinders, and Planes

inferredcites →https://doi.org/10.1021/ma071457xopenalex-snapshot

Electrostatic Free Energies of Spheres, Cylinders, and Planes in Counterion Condensation Theory with Some Applications

inferredcites →https://doi.org/10.1021/ma946426dopenalex-snapshot

Weakly Charged Polyelectrolytes: Collapse Induced by Extra Ionization

inferredcites →https://doi.org/10.1021/ma961126copenalex-snapshot

Collapse of Polyelectrolyte Macromolecules Revisited

inferredcites →https://doi.org/10.1038/nbt0901-805openalex-snapshot

The protein trinity—linking function and disorder

inferredcites →https://doi.org/10.1063/1.1672157openalex-snapshot

Limiting Laws and Counterion Condensation in Polyelectrolyte Solutions I. Colligative Properties

inferredcites →https://doi.org/10.1063/1.439486openalex-snapshot

Molecular dynamics simulations at constant pressure and/or temperature

inferredcites →https://doi.org/10.1073/pnas.032522499openalex-snapshot

Flexibility and packing in proteins

inferredcites →https://doi.org/10.1073/pnas.0437902100openalex-snapshot

Disorder in the nuclear pore complex: The FG repeat regions of nucleoporins are natively unfolded

inferredcites →https://doi.org/10.1073/pnas.95.22.12809openalex-snapshot

Directed evolution of a thermostable esterase

inferredcites →https://doi.org/10.1074/jbc.m003107200openalex-snapshot

Local Structural Elements in the Mostly Unstructured Transcriptional Activation Domain of Human p53

inferredcites →https://doi.org/10.1088/0031-9112/11/10/009openalex-snapshot

Introduction to Statistical Thermodynamics

inferredcites →https://doi.org/10.1093/bioinformatics/btl504openalex-snapshot

FoldUnfold: web server for the prediction of disordered regions in protein chain

inferredcites →https://doi.org/10.1093/jhered/esh040openalex-snapshot

Protein Structure and Function

inferredcites →https://doi.org/10.1093/oso/9780198520597.001.0001openalex-snapshot

Polymer Physics

inferredcites →https://doi.org/10.1103/physrevlett.82.3456openalex-snapshot

Conformation-Dependent Sequence Design (Engineering) of AB Copolymers

inferredcites →https://doi.org/10.1110/ps.03128904openalex-snapshot

Protein flexibility and intrinsic disorder

inferredcites →https://doi.org/10.1110/ps.04881304openalex-snapshot

To be folded or to be unfolded?

inferredcites →https://doi.org/10.1110/ps.4210102openalex-snapshot

Natively unfolded proteins: A point where biology waits for physics

inferredcites →https://doi.org/10.1128/mcb.23.2.534-542.2003openalex-snapshot

Binding Dynamics of Structural Nucleoporins Govern Nuclear Pore Complex Permeability and May Mediate Channel Gating

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.12688/openreseurope.14967.1zenodo-depositor-declared

Improved predictions of phase behaviour of intrinsically disordered proteins by tuning the interaction range

inferred← citeshttps://doi.org/10.12688/openreseurope.14967.2zenodo-depositor-declared

Improved predictions of phase behaviour of intrinsically disordered proteins by tuning the interaction range

inferred← citeshttps://doi.org/10.1002/pro.2261openalex-snapshot

A decade and a half of protein intrinsic disorder: Biology still waits for physics

inferred← citeshttps://doi.org/10.1002/pro.4094openalex-snapshot

Improved coarse‐grained model for studying sequence dependent phase separation of disordered proteins

inferred← citeshttps://doi.org/10.1002/pro.5172openalex-snapshot

A coarse‐grained model for disordered and multi‐domain proteins

inferred← citeshttps://doi.org/10.1002/pro.5179openalex-snapshot

Pathological C‐terminal phosphomimetic substitutions alter the mechanism of liquid–liquid phase separation of TDP‐43 low complexity domain

inferred← citeshttps://doi.org/10.1002/pro.70232openalex-snapshot

A coarse‐grained model for disordered proteins under crowded conditions

inferred← citeshttps://doi.org/10.1002/pro.70284openalex-snapshot

Accurate prediction of thermoresponsive phase behavior of disordered proteins

inferred← citeshttps://doi.org/10.1002/pro.70694openalex-snapshot

AF ‐ CALVADOS : AlphaFold ‐guided simulations of multi‐domain proteins at the proteome level

inferred← citeshttps://doi.org/10.1002/wrna.70061openalex-snapshot

RNA ‐Protein Assemblies: A Review of Biophysical Principles and Coarse‐Grained Modeling Approaches

inferred← citeshttps://doi.org/10.1007/4243_2022_38openalex-snapshot

Single-Molecule Fluorescence Spectroscopy of Intrinsically Disordered Proteins

inferred← citeshttps://doi.org/10.1007/978-1-0716-2663-4_5openalex-snapshot

Multiscale Modeling of Protein-RNA Condensation in and Out of Equilibrium

inferred← citeshttps://doi.org/10.1007/978-1-0716-3985-6_11openalex-snapshot

Molecular Docking of Intrinsically Disordered Proteins: Challenges and Strategies

inferred← citeshttps://doi.org/10.1007/s10118-013-1307-7openalex-snapshot

The collapse of polyethylene rings on an attractive surface

inferred← citeshttps://doi.org/10.1016/b978-0-444-53349-4.00176-xopenalex-snapshot

Conformation-Dependent Design of Synthetic Functional Copolymers

inferred← citeshttps://doi.org/10.1016/bs.mie.2020.07.009openalex-snapshot

Using a sequence-specific coarse-grained model for studying protein liquid–liquid phase separation

inferred← citeshttps://doi.org/10.1016/j.abb.2020.108305openalex-snapshot

Physical basis of the disorder-order transition

inferred← citeshttps://doi.org/10.1016/j.biocel.2011.04.001openalex-snapshot

Intrinsically disordered proteins from A to Z

inferred← citeshttps://doi.org/10.1016/j.bpj.2012.12.012openalex-snapshot

Inherent Relationships among Different Biophysical Prediction Methods for Intrinsically Disordered Proteins

inferred← citeshttps://doi.org/10.1016/j.bpj.2016.05.033openalex-snapshot

Protein Composition Determines the Effect of Crowding on the Properties of Disordered Proteins

inferred← citeshttps://doi.org/10.1016/j.bpj.2019.04.013openalex-snapshot

Molecular Origin of the Stability Difference in Four Shark IgNAR Constant Domains

inferred← citeshttps://doi.org/10.1016/j.bpj.2021.01.034openalex-snapshot

A predictive coarse-grained model for position-specific effects of post-translational modifications

inferred← citeshttps://doi.org/10.1016/j.bpj.2025.07.001openalex-snapshot

A coarse-grained model for simulations of phosphorylated disordered proteins

inferred← citeshttps://doi.org/10.1016/j.bpj.2025.08.001openalex-snapshot

Multi-scale simulations of MUT-16 scaffold protein phase separation and client recognition

inferred← citeshttps://doi.org/10.1016/j.cell.2024.10.048openalex-snapshot

Mechano-dependent sorbitol accumulation supports biomolecular condensate

inferred← citeshttps://doi.org/10.1016/j.energy.2026.140512openalex-snapshot

Insights into CO2-hexane phase behavior under inorganic nanopore confinement: A Wang-Landau transition-matrix Monte Carlo study

inferred← citeshttps://doi.org/10.1016/j.febslet.2011.11.026openalex-snapshot

Length‐dependent compaction of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1016/j.jics.2026.102828openalex-snapshot

Modeling conformational transitions in polymer solutions using single and double Boltzmann sigmoid equations

inferred← citeshttps://doi.org/10.1016/j.jmb.2021.167387openalex-snapshot

Phosphorylation tunes elongation propensity and cohesiveness of INCENP’s intrinsically disordered region

inferred← citeshttps://doi.org/10.1016/j.jmb.2023.167988openalex-snapshot

Condensation Goes Viral: A Polymer Physics Perspective

inferred← citeshttps://doi.org/10.1016/j.molcel.2025.05.008openalex-snapshot

A disordered linker in the Polycomb protein Polyhomeotic tunes phase separation and oligomerization

inferred← citeshttps://doi.org/10.1016/j.physrep.2021.03.003openalex-snapshot

Physics of the nuclear pore complex: Theory, modeling and experiment

inferred← citeshttps://doi.org/10.1016/j.polymer.2018.12.021openalex-snapshot

Impact of polypeptide sequence on thermal properties for diblock, random, and alternating copolymers containing a stoichiometric mixture of glycine and valine

inferred← citeshttps://doi.org/10.1016/j.sbi.2018.10.003openalex-snapshot

Conformational preferences and phase behavior of intrinsically disordered low complexity sequences: insights from multiscale simulations

inferred← citeshttps://doi.org/10.1021/acs.biomac.4c01124openalex-snapshot

Accelerated Missense Mutation Identification in Intrinsically Disordered Proteins Using Deep Learning

inferred← citeshttps://doi.org/10.1021/acs.biomac.5c01118openalex-snapshot

Prediction of Physical Characteristics of Disordered Proteins Using Molecular Simulation and Physics-Informed Multiple Machine Learning Strategies

inferred← citeshttps://doi.org/10.1021/acs.chemrev.4c00969openalex-snapshot

Computer-Aided Drug Discovery for Undruggable Targets

inferred← citeshttps://doi.org/10.1021/acs.jcim.2c00450openalex-snapshot

Developing Bonded Potentials for a Coarse-Grained Model of Intrinsically Disordered Proteins

inferred← citeshttps://doi.org/10.1021/acs.jctc.2c00856openalex-snapshot

Modeling Concentration-dependent Phase Separation Processes Involving Peptides and RNA via Residue-Based Coarse-Graining

inferred← citeshttps://doi.org/10.1021/acs.jctc.3c00525openalex-snapshot

Coarse-Grained Models to Study Protein–DNA Interactions and Liquid–Liquid Phase Separation

inferred← citeshttps://doi.org/10.1021/acs.jctc.4c01646openalex-snapshot

Coarse-Grained Model of Disordered RNA for Simulations of Biomolecular Condensates

inferred← citeshttps://doi.org/10.1021/acs.jctc.5c00147openalex-snapshot

IPAMD: A Plugin-Based Software for Biomolecular Condensate Simulations

inferred← citeshttps://doi.org/10.1021/acs.jctc.6c00469openalex-snapshot

PSFF-PTM: A Coarse-Grained Force-Field Parameter Patch for Modeling Post-Translational Modification Effects on Biomolecular Condensates

inferred← citeshttps://doi.org/10.1021/acs.jctc.6c01336openalex-snapshot

MOFF2: A Transferable Coarse-Grained Protein Force Field for Predictive Condensate Simulations

inferred← citeshttps://doi.org/10.1021/acs.jpcb.2c06181openalex-snapshot

Analytical Formulation and Field-Theoretic Simulation of Sequence-Specific Phase Separation of Protein-Like Heteropolymers with Short- and Long-Spatial-Range Interactions

inferred← citeshttps://doi.org/10.1021/acs.jpcb.3c00830openalex-snapshot

Role of Strong Localized vs Weak Distributed Interactions in Disordered Protein Phase Separation

inferred← citeshttps://doi.org/10.1021/acs.jpcb.3c01292openalex-snapshot

Time-Dependent Material Properties of Aging Biomolecular Condensates from Different Viscoelasticity Measurements in Molecular Dynamics Simulations

inferred← citeshttps://doi.org/10.1021/acs.jpcb.5b08619openalex-snapshot

Sequence- and Temperature-Dependent Properties of Unfolded and Disordered Proteins from Atomistic Simulations

inferred← citeshttps://doi.org/10.1021/acs.jpcb.5c03987openalex-snapshot

Multiphasic Organization and Differential Dynamics of Proteins within Protein–DNA Biomolecular Condensates

inferred← citeshttps://doi.org/10.1021/acs.jpcb.5c04955openalex-snapshot

When B2 is Not Enough: Evaluating Simple Metrics for Predicting Phase Separation of Intrinsically Disordered Proteins

inferred← citeshttps://doi.org/10.1021/acs.jpcb.6c00592openalex-snapshot

A Stickiness Scale for Disordered Proteins

inferred← citeshttps://doi.org/10.1021/acs.jpcb.6c01665openalex-snapshot

From Intermolecular Poses to Thermodynamics Using Subdivided Spheres

inferred← citeshttps://doi.org/10.1021/acs.macromol.2c01390openalex-snapshot

Effect of Charge Distribution on the Dynamics of Polyampholytic Disordered Proteins

inferred← citeshttps://doi.org/10.1021/acscentsci.9b00102openalex-snapshot

Temperature-Controlled Liquid–Liquid Phase Separation of Disordered Proteins

inferred← citeshttps://doi.org/10.1021/acsphyschemau.5c00005openalex-snapshot

Structural and Functional Relevance of Charge-Based Transient Interactions inside Intrinsically Disordered Proteins

inferred← citeshttps://doi.org/10.1021/ct300684jopenalex-snapshot

Coarse-Grained Potentials for Local Interactions in Unfolded Proteins

inferred← citeshttps://doi.org/10.1021/jacs.8b11448openalex-snapshot

Protein Hydration Waters Are Susceptible to Unfavorable Perturbations

inferred← citeshttps://doi.org/10.1021/jacsau.2c00646openalex-snapshot

Highly Charged Proteins and Their Repulsive Interactions Antagonize Biomolecular Condensation

inferred← citeshttps://doi.org/10.1021/jacsau.4c00740openalex-snapshot

Sequence-Encoded Spatiotemporal Dependence of Viscoelasticity of Protein Condensates Using Computational Microrheology

inferred← citeshttps://doi.org/10.1021/jp308984eopenalex-snapshot

Structural Ensemble of an Intrinsically Disordered Polypeptide

inferred← citeshttps://doi.org/10.1021/jp907398ropenalex-snapshot

Tuning the Globular Assembly of Hydrophobic/Hydrophilic Heteropolymer Sequences

inferred← citeshttps://doi.org/10.1021/jp911706qopenalex-snapshot

Prediction of Aggregation Prone Regions of Therapeutic Proteins

inferred← citeshttps://doi.org/10.1038/s41467-019-10031-4openalex-snapshot

Using symmetry to elucidate the importance of stoichiometry in colloidal crystal assembly

inferred← citeshttps://doi.org/10.1038/s41467-024-46223-wopenalex-snapshot

Sequence-dependent material properties of biomolecular condensates and their relation to dilute phase conformations

inferred← citeshttps://doi.org/10.1038/s41467-025-62922-4openalex-snapshot

Phosphorylation toggles the SARS-CoV-2 nucleocapsid protein between two membrane-associated condensate states

inferred← citeshttps://doi.org/10.1038/s41524-025-01900-2openalex-snapshot

Generative active learning across polymer architectures and solvophobicities for targeted rheological behavior

inferred← citeshttps://doi.org/10.1038/s41557-023-01423-7openalex-snapshot

Determinants that enable disordered protein assembly into discrete condensed phases

inferred← citeshttps://doi.org/10.1038/s41589-024-01806-yopenalex-snapshot

The molecular mechanism of temperature-dependent phase separation of heat shock factor 1

inferred← citeshttps://doi.org/10.1038/s42004-026-01933-8openalex-snapshot

Scaffold-client behavior and structural organization in multicomponent protein condensates as revealed by studying tau/TDP-43 droplets

inferred← citeshttps://doi.org/10.1038/s43588-021-00155-3openalex-snapshot

Physics-driven coarse-grained model for biomolecular phase separation with near-quantitative accuracy

inferred← citeshttps://doi.org/10.1038/s44319-025-00626-yopenalex-snapshot

Fluorescent protein and peptide tags alter condensate formation and dynamics in vivo and in vitro

inferred← citeshttps://doi.org/10.1039/c2sm25832copenalex-snapshot

Directional interactions in semiflexible single-chain polymer folding

inferred← citeshttps://doi.org/10.1039/c6mb00415fopenalex-snapshot

Dimension conversion and scaling of disordered protein chains

inferred← citeshttps://doi.org/10.1039/c7sm01005bopenalex-snapshot

Assembly of multi-flavored two-dimensional colloidal crystals

inferred← citeshttps://doi.org/10.1039/c8sm02285bopenalex-snapshot

Thermodynamically driven assemblies and liquid–liquid phase separations in biology

inferred← citeshttps://doi.org/10.1039/c9sm02426copenalex-snapshot

Grand canonical inverse design of multicomponent colloidal crystals

inferred← citeshttps://doi.org/10.1039/d0cp01635gopenalex-snapshot

Protein droplets in systems of disordered homopeptides and the amyloid glass phase

inferred← citeshttps://doi.org/10.1039/d3sm00320eopenalex-snapshot

Re-entrant transitions of locally stiff RNA chains in the presence of polycations leads to gelated architectures

inferred← citeshttps://doi.org/10.1039/d4sc05004eopenalex-snapshot

Sequence-dependent conformational transitions of disordered proteins during condensation

inferred← citeshttps://doi.org/10.1039/d5me00129copenalex-snapshot

Design of simple interactions to assemble complex crystals from binary mixtures of colloidal particles

inferred← citeshttps://doi.org/10.1063/1.5005821openalex-snapshot

Sequence charge decoration dictates coil-globule transition in intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1063/1.5037727openalex-snapshot

Modulating charge patterning and ionic strength as a strategy to induce conformational changes in intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1063/5.0062687openalex-snapshot

Salt dependent phase behavior of intrinsically disordered proteins from a coarse-grained model with explicit water and ions

inferred← citeshttps://doi.org/10.1063/5.0176306openalex-snapshot

Fine structures of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1063/5.0307183openalex-snapshot

In search of shape in the unshaped: Constructing ensembles of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1063/5.0350732openalex-snapshot

Molecular origins of pH gradients in charge-regulated biomolecular condensates

inferred← citeshttps://doi.org/10.1073/pnas.0911107107openalex-snapshot

Net charge per residue modulates conformational ensembles of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1073/pnas.2215828120openalex-snapshot

Phosphorylation sites are evolutionary checkpoints against liquid–solid transition in protein condensates

inferred← citeshttps://doi.org/10.1073/pnas.2417920122openalex-snapshot

Prediction of phase-separation propensities of disordered proteins from sequence

inferred← citeshttps://doi.org/10.1073/pnas.2518384122openalex-snapshot

Sticky interactions govern sequence-dependent dynamics in biomolecular condensates

inferred← citeshttps://doi.org/10.1080/07391102.2018.1472669openalex-snapshot

Composition-related structural transition of random peptides: insight into the boundary between intrinsically disordered proteins and folded proteins

inferred← citeshttps://doi.org/10.1093/nar/gkaa1099openalex-snapshot

Sequence dependent phase separation of protein-polynucleotide mixtures elucidated using molecular simulations

inferred← citeshttps://doi.org/10.1093/nar/gkag253openalex-snapshot

Decoding nucleic acid contributions to phase separation and ordering in biomolecular condensates

inferred← citeshttps://doi.org/10.1093/protein/gzq037openalex-snapshot

Structure-based engineering of a monoclonal antibody for improved solubility

inferred← citeshttps://doi.org/10.1101/2020.06.08.137752openalex-snapshot

Effects of Sequence Composition and Patterning on the Structure and Dynamics of Intrinsically Disordered Proteins

inferred← citeshttps://doi.org/10.1101/2021.02.03.429507openalex-snapshot

Diffusion of the disordered E-cadherin tail on β-catenin

inferred← citeshttps://doi.org/10.1101/2022.11.16.516834openalex-snapshot

Repulsive interaction and secondary structure of highly charged proteins in regulating biomolecular condensation

inferred← citeshttps://doi.org/10.1101/2022.12.07.519428openalex-snapshot

Time-dependent material properties of ageing biomolecular condensates from different viscoelasticity measurements in molecular dynamics simulations

inferred← citeshttps://doi.org/10.1101/2023.03.10.532134openalex-snapshot

Determinants of Disordered Protein Co-Assembly Into Discrete Condensed Phases

inferred← citeshttps://doi.org/10.1101/2023.05.19.541513openalex-snapshot

A coarse-grained DNA model to study protein-DNA interactions and liquid-liquid phase separation

inferred← citeshttps://doi.org/10.1101/2024.06.03.597104openalex-snapshot

Direct prediction of intermolecular interactions driven by disordered regions

inferred← citeshttps://doi.org/10.1101/2025.07.10.664163openalex-snapshot

Heterotypic Protein Interactions Modulate the Condensate Dynamics and Aggregation of α-Synuclein

inferred← citeshttps://doi.org/10.1101/2025.10.19.683306openalex-snapshot

AF-CALVADOS: AlphaFold-guided simulations of multi-domain proteins at the proteome level

inferred← citeshttps://doi.org/10.1101/2025.11.24.690320openalex-snapshot

Slab-PTM: A Coarse-Grained Force-Field Parameter Patch for Modeling Post-Translational Modification Effects on Biomolecular Condensates

inferred← citeshttps://doi.org/10.1103/jsdl-chm9openalex-snapshot

Diffusion of intrinsically disordered proteins within protein condensates

inferred← citeshttps://doi.org/10.1103/n8nd-sgs6openalex-snapshot

Enzymatically Driven Remodeling of Growth Kinetics and Internal Structure in Biomolecular Condensates

inferred← citeshttps://doi.org/10.1103/physreve.110.014403openalex-snapshot

Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus

inferred← citeshttps://doi.org/10.1103/physreve.90.042709openalex-snapshot

Calibrated Langevin-dynamics simulations of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1103/physrevx.14.031011openalex-snapshot

Predicting Heteropolymer Interactions: Demixing and Hypermixing of Disordered Protein Sequences

inferred← citeshttps://doi.org/10.1126/sciadv.adi6539openalex-snapshot

Determinants of viscoelasticity and flow activation energy in biomolecular condensates

inferred← citeshttps://doi.org/10.1126/science.adq8381openalex-snapshot

Sequence-based prediction of intermolecular interactions driven by disordered regions

inferred← citeshttps://doi.org/10.1139/o09-169openalex-snapshot

Molecular simulations of protein disorderThis paper is one of a selection of papers published in this special issue entitled “Canadian Society of Biochemistry, Molecular & Cellular Biology 52nd Annual Meeting — Protein Folding: Principles and Diseases” and has undergone the Journal's usual peer…

inferred← citeshttps://doi.org/10.1146/annurev-physchem-032210-103405openalex-snapshot

Cooperativity, Local-Nonlocal Coupling, and Nonnative Interactions: Principles of Protein Folding from Coarse-Grained Models

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1003239openalex-snapshot

Polycation-π Interactions Are a Driving Force for Molecular Recognition by an Intrinsically Disordered Oncoprotein Family

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1005941openalex-snapshot

Sequence determinants of protein phase behavior from a coarse-grained model

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1009328openalex-snapshot

Targeted modulation of protein liquid–liquid phase separation by evolution of amino-acid sequence

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1009578openalex-snapshot

Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1012737openalex-snapshot

Benchmarking residue-resolution protein coarse-grained models for simulations of biomolecular condensates

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1014462openalex-snapshot

Analysis and design of disordered polypeptides with optimized sequence patterning properties

inferred← citeshttps://doi.org/10.3390/biom11101416openalex-snapshot

Advanced Sampling Methods for Multiscale Simulation of Disordered Proteins and Dynamic Interactions

inferred← citeshttps://doi.org/10.3390/biom13030530openalex-snapshot

Biophysical and Integrative Characterization of Protein Intrinsic Disorder as a Prime Target for Drug Discovery

inferred← citeshttps://doi.org/10.3390/ijms24021444openalex-snapshot

Effects of Sequence Composition, Patterning and Hydrodynamics on the Conformation and Dynamics of Intrinsically Disordered Proteins

inferred← citeshttps://doi.org/10.3390/ijms26136246openalex-snapshot

FINCHES: A Computational Framework for Predicting Intermolecular Interactions in Intrinsically Disordered Proteins

inferred← citeshttps://doi.org/10.34767/simis.2013.10.01openalex-snapshot

Dwie twarze struktury przestrzennej białek – zastosowanie wiedzy o białkach samoistnie nieuporządkowanych w racjonalnym projektowaniu leków

inferred← citeshttps://doi.org/10.64898/2025.12.23.696191openalex-snapshot

Molecular interactions underlying selective partitioning of clients into MED1 and FUS condensates

inferred← citeshttps://doi.org/10.64898/2026.02.03.703500openalex-snapshot

On the Use of Double Mutant Cycles to Probe the Molecular Interactions in Biomolecular Condensates

inferred← citeshttps://doi.org/10.64898/2026.05.11.724232openalex-snapshot

The phosphoproteomic landscape of the DNA damage response

inferred← citeshttps://doi.org/10.64898/2026.06.06.730477openalex-snapshot

Active Learning–Guided Peptide Design for Modulating Condensate Properties upon Recruitment

inferred← citeshttps://doi.org/10.64898/2026.06.25.734509openalex-snapshot

Interplay Between Protein–RNA Binding and Phase Separation Drives Emergent Behavior in RNP Condensates

inferred← citeshttps://doi.org/10.64898/2026.09.23.753891openalex-snapshot

Designed IDPs phase separate and mix or demix according to sequence designed parameters

inferred← citeshttps://doi.org/10.7498/aps.69.20200438openalex-snapshot

Theoretical and computational methods of protein liquid-liquid phase separation

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.