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A Force Field with Discrete Displaceable Waters and Desolvation Entropy for Hydrated Ligand Docking

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Outgoing claims: the papers this work cites, builds on, or argues with.

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A semiempirical free energy force field with charge‐based desolvation
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Empirical entropic contributions in computational docking: Evaluation in APS reductase complexes
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Predicting conserved water-mediated and polar ligand interactions in proteins using a K-nearest-neighbors genetic algorithm
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Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4
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Docking studies on PARP-1 inhibitors: insights into the role of a binding pocket water molecule
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Central nicotinic receptor ligands and pharmacophores
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Protein Kinases: Docking and Homology Modeling Reliability
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Rapid Context-Dependent Ligand Desolvation in Molecular Docking
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Molecular Docking with Ligand Attached Water Molecules
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Analysis of Ligand-Bound Water Molecules in High-Resolution Crystal Structures of Protein−Ligand Complexes
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Ligand−Protein Docking with Water Molecules
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Protein−Ligand Docking against Non-Native Protein Conformers
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Computational Drug Design Accommodating Receptor Flexibility: The Relaxed Complex Scheme
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Classification of Water Molecules in Protein Binding Sites
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Use of Medium-Sized Cycloalkyl Rings To Enhance Secondary Binding: Discovery of a New Class of Human Immunodeficiency Virus (HIV) Protease Inhibitors
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Further development of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure. 2. Ligand probe groups with the ability to form more than two hydrogen bonds
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Resistance-Modifying Agents. 9. Synthesis and Biological Properties of Benzimidazole Inhibitors of the DNA Repair Enzyme Poly(ADP-ribose) Polymerase
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Modeling Water Molecules in Protein−Ligand Docking Using GOLD
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Docking of Aminoglycosides to Hydrated and Flexible RNA
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Diverse, High-Quality Test Set for the Validation of Protein−Ligand Docking Performance
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Robust Classification of “Relevant” Water Molecules in Putative Protein Binding Sites
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Exploiting Ordered Waters in Molecular Docking
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Four-Dimensional Docking: A Fast and Accurate Account of Discrete Receptor Flexibility in Ligand Docking
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Unexpected Binding Mode of a Cyclic Sulfamide HIV-1 Protease Inhibitor
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Lone Pairs in Carbonyl Compounds and Ethers
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Assessing the Role of Polarization in Docking
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Prediction of the Water Content in Protein Binding Sites
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Structure and Activity of Acetylcholine
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Crystal structure of an ACh-binding protein reveals the ligand-binding domain of nicotinic receptors
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Nicotine binding to brain receptors requires a strong cation–π interaction
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Molecular docking and ligand specificity in fragment-based inhibitor discovery
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HIV-1 protease: mechanism and drug discovery
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Motifs for molecular recognition exploiting hydrophobic enclosure in protein–ligand binding
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Atomic interactions of neonicotinoid agonists with AChBP: Molecular recognition of the distinctive electronegative pharmacophore
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Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography
inferredcites →https://doi.org/10.1073/pnas.1007140107openalex-snapshot
Nicotinic pharmacophore: The pyridine N of nicotine and carbonyl of acetylcholine hydrogen bond across a subunit interface to a backbone NH
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Magnaporthe grisea genes for pathogenicity and virulence identified through a series of backcrosses.
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The Protein Data Bank
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Electrostatic effects in proteins: comparison of dielectric and charge models
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The Entropic Cost of Bound Water in Crystals and Biomolecules
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Rational Design of Potent, Bioavailable, Nonpeptide Cyclic Ureas as HIV Protease Inhibitors
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Convergent algorithms for protein structural alignment
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Virtual screening with AutoDock: theory and practice
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The Role of Water Molecules in Computational Drug Design
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Explicit Treatment of Water Molecules in Protein-Ligand Docking
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Poly(ADP-Ribose) polymerase (PARP) inhibitors: Exploiting a synthetic lethal strategy in the clinic

What points at this work

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Design and synthesis of novel xanthone-triazole derivatives as potential antidiabetic agents: α-Glucosidase inhibition and glucose uptake promotion
inferred← citeshttps://doi.org/10.1016/j.ejmech.2019.05.062openalex-snapshot
Investigating 1,2,3,4,5,6-hexahydroazepino[4,3-b]indole as scaffold of butyrylcholinesterase-selective inhibitors with additional neuroprotective activities for Alzheimer's disease
inferred← citeshttps://doi.org/10.1016/j.ejmech.2022.114358openalex-snapshot
Structure-based design of novel donepezil-like hybrids for a multi-target approach to the therapy of Alzheimer's disease
inferred← citeshttps://doi.org/10.1016/j.ejmech.2023.115543openalex-snapshot
Discovery of N-(2-chloro-5-(3-(pyridin-4-yl)-1H-pyrazolo[3,4-b]pyridin-5-yl)pyridin-3-yl)-4-fluorobenzenesulfonamide (FD274) as a highly potent PI3K/mTOR dual inhibitor for the treatment of acute myeloid leukemia
inferred← citeshttps://doi.org/10.1016/j.ejmech.2023.115695openalex-snapshot
Synthesis, computational and experimental pharmacological studies for (thio)ether-triazine 5-HT6R ligands with noticeable action on AChE/BChE and chalcogen-dependent intrinsic activity in search for new class of drugs against Alzheimer's disease
inferred← citeshttps://doi.org/10.1016/j.ejmech.2024.116353openalex-snapshot
Novel 6-alkyl-bridged 4-arylalkylpiperazin-1-yl derivatives of azepino[4,3-b]indol-1(2H)-one as potent BChE-selective inhibitors showing protective effects against neurodegenerative insults
inferred← citeshttps://doi.org/10.1016/j.ejmech.2025.117964openalex-snapshot
Hunting for lubeluzole analogues as antimyotonic agents with reduced cardiac liability
inferred← citeshttps://doi.org/10.1016/j.ejmech.2025.118026openalex-snapshot
The first-in-class 1,3,5-triazine-derived dual 5-HT6R/FAAH modulators in search for potential drug against neurodegenerative diseases with cognitive impairment
inferred← citeshttps://doi.org/10.1016/j.ejmech.2025.118043openalex-snapshot
Design, anticancer activity, and mechanistic evaluation of a novel class of selective human carbonic anhydrase IX inhibitors featuring a trifluorodihydroxypropanone pharmacophore
inferred← citeshttps://doi.org/10.1016/j.ejmech.2026.118966openalex-snapshot
New chalcogen-optimized 1,3,5-triazines as dual 5-HT6R/FAAH modulators: A versatile approach to neurodegenerative disorders
inferred← citeshttps://doi.org/10.1016/j.fitote.2025.106458openalex-snapshot
The efficacy and mechanisms of Maiguanfukang Tablets, a patented herbal-based TCM formula, for the treatment of atherosclerosis: An in vivo experiment based on the network pharmacology
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e40211openalex-snapshot
Screening and identification of phytochemicals from Acorus calamus L. to overcome NDM-1 mediated resistance in Klebsiella pneumoniae using in silico approach
inferred← citeshttps://doi.org/10.1016/j.hermed.2024.100888openalex-snapshot
In silico analysis of soybean phytocompounds against Plasmodium falciparum
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2019.10.160openalex-snapshot
Shedding light on the interaction of polydatin and resveratrol with G-quadruplex and duplex DNA: a biophysical, computational and biological approach
inferred← citeshttps://doi.org/10.1016/j.ijpharm.2025.125481openalex-snapshot
Enhanced antibacterial efficacy of new benzothiazole phthalimide hybrid compounds/methyl-β-cyclodextrin inclusion complexes compared to the free forms: Insights into the possible mode of action
inferred← citeshttps://doi.org/10.1016/j.inoche.2025.116001openalex-snapshot
A mechanistic insight into the anticancer activity of two novel metal Schiff base complexes through spectrophotometric and computational approach against melanoma
inferred← citeshttps://doi.org/10.1016/j.jics.2022.100669openalex-snapshot
Boerhavia diffusa plant extract can be a new potent therapeutics against mutant nephrin protein responsible for type1 nephrotic syndrome: Insight into hydrate-ligand docking interactions and molecular dynamics simulation study
inferred← citeshttps://doi.org/10.1016/j.jmgm.2017.09.016openalex-snapshot
Simplified AutoDock force field for hydrated binding sites
inferred← citeshttps://doi.org/10.1016/j.jmgm.2022.108348openalex-snapshot
Targeting human thymidylate synthase: Ensemble-based virtual screening for drug repositioning and the role of water
inferred← citeshttps://doi.org/10.1016/j.jmgm.2023.108568openalex-snapshot
Ensemble-based virtual screening of African natural products to target human thymidylate synthase
inferred← citeshttps://doi.org/10.1016/j.jpba.2022.114750openalex-snapshot
Characterization of molecular interactions between cannabidiol and human plasma proteins (serum albumin and γ-globulin) by surface plasmon resonance, microcalorimetry, and molecular docking
inferred← citeshttps://doi.org/10.1016/j.jphotobiol.2016.11.008openalex-snapshot
Synthesis, photophysical properties and systematic evaluations of new phenanthroimidazole fluorescent probe for bioimaging: Experimental and theoretical study
inferred← citeshttps://doi.org/10.1016/j.jphotochem.2017.06.024openalex-snapshot
Theoretical studies on the interaction between chalcone dyes and Concanavalin A—The reactive group effects on the photophysical and biological properties of the fluorescence probe
inferred← citeshttps://doi.org/10.1016/j.jphotochem.2018.08.003openalex-snapshot
The influence of donor substituents on spectral properties and biological activities of fluorescent markers conjugated with protein
inferred← citeshttps://doi.org/10.1016/j.kjs.2025.100516openalex-snapshot
In silico insights into (±)-zanthonitidumine B: anti-Inflammatory potency and enantiomeric selectivity through molecular docking, DFT, and MEP studies
inferred← citeshttps://doi.org/10.1016/j.lmd.2025.100070openalex-snapshot
Binding affinity and structural dynamics of amygdalin-HER2 interactions: An investigation for breast cancer therapy
inferred← citeshttps://doi.org/10.1016/j.lwt.2023.115498openalex-snapshot
Structural basis of mannitol-induced activation of human taste receptor PKD2L1
inferred← citeshttps://doi.org/10.1016/j.matpr.2019.04.100openalex-snapshot
7-Hydroxy-6-Methoxy-Coumarian to be a Multifunctional Bioactive Natural molecule: A Theoretical Study
inferred← citeshttps://doi.org/10.1016/j.matpr.2020.04.547openalex-snapshot
Density functional theory analysis of electronic properties correlated with the biological activities of naturally occurring biomolecular system: Isodihydrocadambine
inferred← citeshttps://doi.org/10.1016/j.matpr.2020.04.874openalex-snapshot
Exploring multidimensional applications of natural bioactive molecule isodihydrocadambine-4-oxide: DFT approach
inferred← citeshttps://doi.org/10.1016/j.matpr.2020.05.273openalex-snapshot
Quantum chemical computations of electronic properties and drug activity of a naturally occurring dihydrocadambine biomolecule
inferred← citeshttps://doi.org/10.1016/j.matpr.2020.12.288openalex-snapshot
A comprehensive study of structural, vibrational, electronic properties of celecoxib compound by density functional theory
inferred← citeshttps://doi.org/10.1016/j.molliq.2020.113632openalex-snapshot
Experimental and theoretical insight into spectroscopic properties and bioactivity of 4-(4-formylbenzylidene)-2-phenyloxazol-5(4H)-one dye for future applications in biochemistry
inferred← citeshttps://doi.org/10.1016/j.molliq.2021.117960openalex-snapshot
Investigation of glutathione as a natural antioxidant and multitarget inhibitor for Alzheimer’s disease: Insights from molecular simulations
inferred← citeshttps://doi.org/10.1016/j.molliq.2025.127717openalex-snapshot
Lenalidomide as a molecular glue: Modulating human serum albumin self-interactions and aggregation
inferred← citeshttps://doi.org/10.1016/j.molstruc.2016.12.028openalex-snapshot
Solubility profiles, hydration and desolvation of curcumin complexed with γ-cyclodextrin and hydroxypropyl-γ-cyclodextrin
inferred← citeshttps://doi.org/10.1016/j.molstruc.2021.130092openalex-snapshot
Synthesis of novel β-lactams: Antioxidant activity, acetylcholinesterase inhibition and computational studies
inferred← citeshttps://doi.org/10.1016/j.molstruc.2023.135917openalex-snapshot
Protein binding and anticancer activity of two newly synthesized Schiff base platinum (II) complexes: A theoretical and experimental study
inferred← citeshttps://doi.org/10.1016/j.nexres.2026.101424openalex-snapshot
DFT, molecular docking, molecular dynamics and ADMET integrated study reveal naturally occurring compound Nardosinone as a potential drug candidate against ALS-related protease
inferred← citeshttps://doi.org/10.1016/j.pestbp.2022.105074openalex-snapshot
Competitive chrodrimanin B interactions with rat brain GABAA receptors revealed by radioligand binding assays
inferred← citeshttps://doi.org/10.1016/j.phyplu.2024.100546openalex-snapshot
Radical scavenging dihydroxycinnamic natural compounds from Trianthema pentandra
inferred← citeshttps://doi.org/10.1016/j.poly.2026.118316openalex-snapshot
Co(III), Cr(III), and Ni(II) complexes of pyridyl-amino acid reduced Schiff bases: Synthesis, characterization and DNA binding studies
inferred← citeshttps://doi.org/10.1016/j.saa.2019.117757openalex-snapshot
2′-(1H-phenanthro[9,10-d]imidazol-2-yl)-phenyl-4-carboxylic acid N-hydroxysuccinimide ester: A new phenanthroimidazole derivative as a fluorescent probe for medical imaging applications
inferred← citeshttps://doi.org/10.1016/j.saa.2025.125965openalex-snapshot
Interaction, inhibition and disruption of lysozyme fibrillar aggregates by the plant alkaloid berberine
inferred← citeshttps://doi.org/10.1016/j.sajb.2024.04.041openalex-snapshot
Unraveling the antiviral activity of Stachytarpheta cayennensis against SARS-CoV-2 variants using in vitro and molecular docking analysis
inferred← citeshttps://doi.org/10.1016/j.str.2013.07.012openalex-snapshot
Efficient and Robust Analysis of Biomacromolecular Flexibility Using Ensembles of Network Topologies Based on Fuzzy Noncovalent Constraints
inferred← citeshttps://doi.org/10.1016/j.str.2024.07.018openalex-snapshot
Structural basis for FN3K-mediated protein deglycation
inferred← citeshttps://doi.org/10.1016/j.xcrm.2024.101568openalex-snapshot
scRank infers drug-responsive cell types from untreated scRNA-seq data using a target-perturbed gene regulatory network
inferred← citeshttps://doi.org/10.1021/acs.jcim.0c00779openalex-snapshot
GridSolvate: A Web Server for the Prediction of Biomolecular Hydration Properties
inferred← citeshttps://doi.org/10.1021/acs.jcim.0c01358openalex-snapshot
MSLDOCK: Multi-Swarm Optimization for Flexible Ligand Docking and Virtual Screening
inferred← citeshttps://doi.org/10.1021/acs.jcim.1c00184openalex-snapshot
Lead Discovery of SARS-CoV-2 Main Protease Inhibitors through Covalent Docking-Based Virtual Screening
inferred← citeshttps://doi.org/10.1021/acs.jcim.1c00203openalex-snapshot
AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings
inferred← citeshttps://doi.org/10.1021/acs.jcim.1c00404openalex-snapshot
Strengths and Weaknesses of Docking Simulations in the SARS-CoV-2 Era: the Main Protease (Mpro) Case Study
inferred← citeshttps://doi.org/10.1021/acs.jcim.1c01537openalex-snapshot
AA-Score: a New Scoring Function Based on Amino Acid-Specific Interaction for Molecular Docking
inferred← citeshttps://doi.org/10.1021/acs.jcim.2c00306openalex-snapshot
GalaxyWater-CNN: Prediction of Water Positions on the Protein Structure by a 3D-Convolutional Neural Network
inferred← citeshttps://doi.org/10.1021/acs.jcim.4c01623openalex-snapshot
Development of Receptor Desolvation Scoring and Covalent Sampling in DOCK 6: Methods Evaluated on a RAS Test Set
inferred← citeshttps://doi.org/10.1021/acs.jcim.5b00641openalex-snapshot
Differential Water Thermodynamics Determine PI3K-Beta/Delta Selectivity for Solvent-Exposed Ligand Modifications
inferred← citeshttps://doi.org/10.1021/acs.jcim.5c02271openalex-snapshot
Meeko: Molecule Parametrization and Software Interoperability for Docking and Beyond
inferred← citeshttps://doi.org/10.1021/acs.jcim.7b00520openalex-snapshot
Prediction of Ordered Water Molecules in Protein Binding Sites from Molecular Dynamics Simulations: The Impact of Ligand Binding on Hydration Networks
inferred← citeshttps://doi.org/10.1021/acs.jcim.8b00312openalex-snapshot
Evaluation of AutoDock and AutoDock Vina on the CASF-2013 Benchmark
inferred← citeshttps://doi.org/10.1021/acs.jcim.9b00135openalex-snapshot
Time-Domain Analysis of Molecular Dynamics Trajectories Using Deep Neural Networks: Application to Activity Ranking of Tankyrase Inhibitors
inferred← citeshttps://doi.org/10.1021/acs.jctc.0c01006openalex-snapshot
Accelerating A uto D ock 4 with GPUs and Gradient-Based Local Search
inferred← citeshttps://doi.org/10.1021/acs.jctc.2c01087openalex-snapshot
WaterKit: Thermodynamic Profiling of Protein Hydration Sites
inferred← citeshttps://doi.org/10.1021/acs.jctc.4c00681openalex-snapshot
SPRank─A Knowledge-Based Scoring Function for RNA-Ligand Pose Prediction and Virtual Screening
inferred← citeshttps://doi.org/10.1021/acs.jctc.4c01165openalex-snapshot
Modeling Ligand Binding Site Water Networks with Site Identification by Ligand Competitive Saturation: Impact on Ligand Binding Orientations and Relative Binding Affinities
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.1c02203openalex-snapshot
Design, Synthesis, Biological Evaluation, and Computational Studies of Novel Ureidopropanamides as Formyl Peptide Receptor 2 (FPR2) Agonists to Target the Resolution of Inflammation in Central Nervous System Disorders
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.5b00861openalex-snapshot
Highly Sensitive Near-Infrared Fluorophores for in Vivo Detection of Amyloid-β Plaques in Alzheimer’s Disease
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.5b02008openalex-snapshot
Docking Screens for Novel Ligands Conferring New Biology
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.7b00057openalex-snapshot
The Roles of Water in the Protein Matrix: A Largely Untapped Resource for Drug Discovery
inferred← citeshttps://doi.org/10.1021/acschemneuro.5c00308openalex-snapshot
Design, Synthesis, and Biological Evaluation of Novel Heteroaryl, Squaramide, and Indolcarboxamide Derivatives as Formyl Peptide Receptor 2 Agonists to Target Neuroinflammation
inferred← citeshttps://doi.org/10.1021/acsinfocus.7e5001openalex-snapshot
Virtual Screening for Chemists
inferred← citeshttps://doi.org/10.1021/acsmedchemlett.7b00229openalex-snapshot
Exploring Heteroaryl-pyrazole Carboxylic Acids as Human Carbonic Anhydrase XII Inhibitors
inferred← citeshttps://doi.org/10.1021/acsomega.1c04069openalex-snapshot
Direct Synthesis of Diamides from Dicarboxylic Acids with Amines Using Nb2O5 as a Lewis Acid Catalyst and Molecular Docking Studies as Anticancer Agents
inferred← citeshttps://doi.org/10.1021/acsomega.6b00123openalex-snapshot
Free Energy-Based Virtual Screening and Optimization of RNase H Inhibitors of HIV-1 Reverse Transcriptase
inferred← citeshttps://doi.org/10.1021/acsomega.6c02050openalex-snapshot
From 18F-MC225 to Conformationally Free Derivatives
inferred← citeshttps://doi.org/10.1021/acsphyschemau.6c00072openalex-snapshot
Robust Ligand Docking into Challenging Hydrated Binding Pockets
inferred← citeshttps://doi.org/10.1021/ci3005786openalex-snapshot
Hydration Properties of Ligands and Drugs in Protein Binding Sites: Tightly-Bound, Bridging Water Molecules and Their Effects and Consequences on Molecular Design Strategies
inferred← citeshttps://doi.org/10.1021/ci400052wopenalex-snapshot
Investigation on the Effect of Key Water Molecules on Docking Performance in CSARdock Exercise
inferred← citeshttps://doi.org/10.1021/ci400367mopenalex-snapshot
Accounting for Target Flexibility and Water Molecules by Docking to Ensembles of Target Structures: The HCV NS5B Palm Site I Inhibitors Case Study
inferred← citeshttps://doi.org/10.1021/ci500209eopenalex-snapshot
AutoDock4Zn: An Improved AutoDock Force Field for Small-Molecule Docking to Zinc Metalloproteins
inferred← citeshttps://doi.org/10.1021/ci500299hopenalex-snapshot
Docking Ligands into Flexible and Solvated Macromolecules. 7. Impact of Protein Flexibility and Water Molecules on Docking-Based Virtual Screening Accuracy
inferred← citeshttps://doi.org/10.1021/jacs.5c01274openalex-snapshot
Enhanced Binding Site Identification in Protein–Ligand Complexes with a Combined Blind Docking and Dipolar Electron Paramagnetic Resonance Approach
inferred← citeshttps://doi.org/10.1021/jm301124sopenalex-snapshot
Benzofuroxane Derivatives as Multi-Effective Agents for the Treatment of Cardiovascular Diabetic Complications. Synthesis, Functional Evaluation, and Molecular Modeling Studies
inferred← citeshttps://doi.org/10.1021/jm400932copenalex-snapshot
Phenylpyrazolo[1,5-a]quinazolin-5(4H)-one: A Suitable Scaffold for the Development of Noncamptothecin Topoisomerase I (Top1) Inhibitors
inferred← citeshttps://doi.org/10.1038/nprot.2016.051openalex-snapshot
Computational protein–ligand docking and virtual drug screening with the AutoDock suite
inferred← citeshttps://doi.org/10.1038/s41467-019-09467-5openalex-snapshot
Biosynthesis of DHGA12 and its roles in Arabidopsis seedling establishment
inferred← citeshttps://doi.org/10.1038/s41570-018-0018-6openalex-snapshot
Metal–ligand interactions in drug design
inferred← citeshttps://doi.org/10.1038/s41598-022-13867-xopenalex-snapshot
Design, synthesis, and biological evaluation of tetrahydroquinolinones and tetrahydroquinolines with anticancer activity
inferred← citeshttps://doi.org/10.1038/srep16750openalex-snapshot
Targeting kinases with anilinopyrimidines: discovery of N-phenyl-N’-[4-(pyrimidin-4-ylamino)phenyl]urea derivatives as selective inhibitors of class III receptor tyrosine kinase subfamily
inferred← citeshttps://doi.org/10.1039/9781849735377-00171openalex-snapshot
Docking and Virtual Screening
inferred← citeshttps://doi.org/10.1039/c4mb00239copenalex-snapshot
Validation of a computational docking methodology to identify the non-covalent binding site of ligands to DNA
inferred← citeshttps://doi.org/10.1039/c7ob02439hopenalex-snapshot
Synthesis, photophysical and biological properties of a new oxazolone fluorescent probe for bioimaging: an experimental and theoretical study
inferred← citeshttps://doi.org/10.1039/c8ob00729bopenalex-snapshot
Reactive group effects on the photophysical and biological properties of 2-phenyl-1 H -phenanthro[9,10- d ]imidazole derivatives as fluorescent markers
inferred← citeshttps://doi.org/10.1039/c9pp00478eopenalex-snapshot
4-(4-Chloro-2-oxo-3(1H-phenanthro[9,10-d] imidazol-2-yl)-2H-chromen-6-yl)benzaldehyde as a fluorescent probe for medical imaging: linear and nonlinear optical properties
inferred← citeshttps://doi.org/10.1039/d0ra04835fopenalex-snapshot
Optimizing the optical and biological properties of 6-(1 H -benzimidazole)-2-naphthalenol as a fluorescent probe for the detection of thiophenols: a theoretical study
inferred← citeshttps://doi.org/10.1039/d1nj01960kopenalex-snapshot
Spectroscopic, computational and molecular docking study of Cu( ii ) complexes with flavonoids: from cupric ion binding to DNA intercalation
inferred← citeshttps://doi.org/10.1039/d4ra01070aopenalex-snapshot
ADME profiling, molecular docking, DFT, and MEP analysis reveal cissamaline, cissamanine, and cissamdine from Cissampelos capensis L.f. as potential anti-Alzheimer's agents
inferred← citeshttps://doi.org/10.1039/d4ra06975gopenalex-snapshot
Discovery of novel PDGFR inhibitors targeting non-small cell lung cancer using a multistep machine learning assisted hybrid virtual screening approach
inferred← citeshttps://doi.org/10.1039/d5cp01353dopenalex-snapshot
Sensing diclofenac with DNA aptamers: an atomistic picture from molecular modelling
inferred← citeshttps://doi.org/10.1039/d5cp03617hopenalex-snapshot
Grammatical evolution-based design of nucleotic analogs for SARS-CoV-2's replication-transcription complex
inferred← citeshttps://doi.org/10.1063/1.5098621openalex-snapshot
DFT based modeling of a natural molecule- D-Myo-Inositol explores it to be a multifunctional biologically active
inferred← citeshttps://doi.org/10.1063/1.5122568openalex-snapshot
Theoretical evaluation of the bioactivity of a plant-derived natural molecule-D-Pinitol and other derived structure
inferred← citeshttps://doi.org/10.1063/5.0048631openalex-snapshot
Dual artificial intelligence methods-based analysis of the impact of domain oscillations on functions of ficin protein
inferred← citeshttps://doi.org/10.1074/jbc.m113.517987openalex-snapshot
Oxicams Bind in a Novel Mode to the Cyclooxygenase Active Site via a Two-water-mediated H-bonding Network
inferred← citeshttps://doi.org/10.1074/jbc.m116.753384openalex-snapshot
A New Class of Allosteric HIV-1 Integrase Inhibitors Identified by Crystallographic Fragment Screening of the Catalytic Core Domain
inferred← citeshttps://doi.org/10.1080/00268976.2018.1504135openalex-snapshot
Ethanol-induced conformational fluctuations of NMDA receptors
inferred← citeshttps://doi.org/10.1080/00958972.2026.2740675openalex-snapshot
Synthesis, structural elucidation, DFT, and molecular analysis of transition-metal complexes of bis(isatin salicylhydrazide hydrazone) as potential anti-inflammatory agents
inferred← citeshttps://doi.org/10.1080/07391102.2016.1180262openalex-snapshot
Acetaminophen interacts with human hemoglobin: optical, physical and molecular modeling studies
inferred← citeshttps://doi.org/10.1080/07391102.2017.1384399openalex-snapshot
Binding of ibuprofen to human hemoglobin: elucidation of their molecular recognition by spectroscopy, calorimetry, and molecular modeling techniques
inferred← citeshttps://doi.org/10.1080/07391102.2018.1508369openalex-snapshot
Exploring the binding dynamics of etoricoxib with human hemoglobin: A spectroscopic, calorimetric, and molecular modeling approach
inferred← citeshttps://doi.org/10.1080/07391102.2020.1864661openalex-snapshot
Computational approach to explore the inhibitory potential of biologically derived compounds againstSpodoptera lituravitellogenin receptor (VgR) using structure based virtual screening and molecular dynamics
inferred← citeshttps://doi.org/10.1080/07391102.2021.1898471openalex-snapshot
Microsecond simulation analysis of carbonic anhydrase – II in complex with (+)-cathechin revealed molecular interactions responsible for its amelioration effect on fluoride toxicity
inferred← citeshttps://doi.org/10.1080/07391102.2021.1925592openalex-snapshot
Hemoglobin catalyzes ATP-synthesis in human erythrocytes: a murburn model
inferred← citeshttps://doi.org/10.1080/07391102.2021.1960197openalex-snapshot
In silicoinvestigations of someCyperus rotunduscompounds as potential anti-inflammatory inhibitors of 5-LO and LTA4H enzymes
inferred← citeshttps://doi.org/10.1080/07391102.2022.2074140openalex-snapshot
Finding alternatives to 5-fluorouracil: application of ensemble-based virtual screening for drug repositioning against human thymidylate synthase
inferred← citeshttps://doi.org/10.1080/07391102.2024.2431649openalex-snapshot
Explicit water-ligand docking, drug-likeness and molecular dynamics simulation analysis to predict the potency of Boerhavia diffusa plant extract against mutant wilms tumor-1 protein responsible for type 4 nephrotic syndrome
inferred← citeshttps://doi.org/10.1080/07391102.2024.2446666openalex-snapshot
Integrated pharmacophore-based virtual screening and molecular modeling approaches for the identification of sigma-2 receptor antagonists as novel therapeutics against Alzheimer’s disease
inferred← citeshttps://doi.org/10.1080/1062936x.2021.1975167openalex-snapshot
Suggestion of active 3-chymotrypsin like protease (3CL Pro ) inhibitors as potential anti-SARS-CoV-2 agents using predictive QSAR model based on the combination of ALASSO with an ANN model
inferred← citeshttps://doi.org/10.1080/14756366.2017.1411910openalex-snapshot
Discovery of antimicrobial compounds targeting bacterial type FAD synthetases
inferred← citeshttps://doi.org/10.1080/14756366.2018.1530223openalex-snapshot
Computer-aided molecular design of pyrazolotriazines targeting glycogen synthase kinase 3
inferred← citeshttps://doi.org/10.1080/17460441.2019.1604677openalex-snapshot
The compromise of virtual screening and its impact on drug discovery
inferred← citeshttps://doi.org/10.1093/bioinformatics/btv411openalex-snapshot
WATCLUST: a tool for improving the design of drugs based on protein-water interactions
inferred← citeshttps://doi.org/10.1093/glycob/cwt061openalex-snapshot
The initial noncovalent binding of glucose to human hemoglobin in nonenzymatic glycation
inferred← citeshttps://doi.org/10.1093/glycob/cwu102openalex-snapshot
Using crystallographic water properties for the analysis and prediction of lectin-carbohydrate complex structures
inferred← citeshttps://doi.org/10.1096/fj.202000443rropenalex-snapshot
Activation of TMEM16A by natural product canthaxanthin promotes gastrointestinal contraction
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