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Effects of Crowding and Confinement on the Structures of the Transition State Ensemble in Proteins

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Multiple protein folding nuclei and the transition state ensemble in two‐state proteins
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Lattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism 1 1Edited by A. R. Fersht
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Exploring the kinetic requirements for enhancement of protein folding rates in the GroEL cavity
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Mapping the transition state of the WW domain β-sheet
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The folding mechanism of a β-sheet: the WW domain
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Effects of pH, Salt, and Macromolecular Crowding on the Stability of FK506-binding Protein: An Integrated Experimental and Theoretical Study
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Symmetric Connectivity of Secondary Structure Elements Enhances the Diversity of Folding Pathways
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Nanopore–Protein Interactions Dramatically Alter Stability and Yield of the Native State in Restricted Spaces
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Replica-exchange molecular dynamics method for protein folding
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Effect of Dextran on Protein Stability and Conformation Attributed to Macromolecular Crowding
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Nascent Membrane and Secretory Proteins Differ in FRET-Detected Folding Far inside the Ribosome and in Their Exposure to Ribosomal Proteins
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Structural properties of lipid-binding sites in cytoskeletal proteins
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Protein folding funnels: the nature of the transition state ensemble
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Protein folding kinetics: timescales, pathways and energy landscapes in terms of sequence-dependent properties
inferredcites →https://doi.org/10.1021/jp034441ropenalex-snapshot
Exploring the Interplay between Topology and Secondary Structural Formation in the Protein Folding Problem
inferredcites →https://doi.org/10.1021/jp049103kopenalex-snapshot
The Li+ CationThe Descendant of H+ or an Ancestor of Na+? The Properties of Li+Arn (n = 1−6) Clusters
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Aspects of Protein Reaction Dynamics: Deviations from Simple Behavior
inferredcites →https://doi.org/10.1038/425028aopenalex-snapshot
Entanglement hits the big time
inferredcites →https://doi.org/10.1063/1.1630572openalex-snapshot
From transition paths to transition states and rate coefficients
inferredcites →https://doi.org/10.1063/1.1740347openalex-snapshot
On Interaction between Two Bodies Immersed in a Solution of Macromolecules
inferredcites →https://doi.org/10.1063/1.1740348openalex-snapshot
Polarization of π-Electron Transitions in Aromatic Molecules
inferredcites →https://doi.org/10.1073/pnas.072220699openalex-snapshot
Simulations of β-hairpin folding confined to spherical pores using distributed computing
inferredcites →https://doi.org/10.1073/pnas.0731771100openalex-snapshot
The structural basis for biphasic kinetics in the folding of the WW domain from a formin-binding protein: Lessons for protein design?
inferredcites →https://doi.org/10.1073/pnas.1831920100openalex-snapshot
How protein thermodynamics and folding mechanisms are altered by the chaperonin cage: Molecular simulations
inferredcites →https://doi.org/10.1073/pnas.202331299openalex-snapshot
FlgM gains structure in living cells
inferredcites →https://doi.org/10.1073/pnas.97.2.634openalex-snapshot
Landscape approaches for determining the ensemble of folding transition states: Success and failure hinge on the degree of frustration
inferredcites →https://doi.org/10.1103/physrevlett.68.2696openalex-snapshot
Large-amplitude nonlinear motions in proteins
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Pair potentials for protein folding: Choice of reference states and sensitivity of predicted native states to variations in the interaction schemes
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Macromolecular Crowding: Biochemical, Biophysical, and Physiological Consequences
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Models for Excluded Volume Interaction between an Unfolded Protein and Rigid Macromolecular Cosolutes: Macromolecular Crowding and Protein Stability Revisited

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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