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Improving Sensitivity by Probabilistically Combining Results from Multiple MS/MS Search Methodologies
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Outgoing claims: the papers this work cites, builds on, or argues with.
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A method for reducing the time required to match protein sequences with tandem mass spectra
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Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation
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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
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Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS
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Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search
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A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry
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A Hypergeometric Probability Model for Protein Identification and Validation Using Tandem Mass Spectral Data and Protein Sequence Databases
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Improving Reproducibility and Sensitivity in Identifying Human Proteins by Shotgun Proteomics
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High-Throughput Identification of Proteins and Unanticipated Sequence Modifications Using a Mass-Based Alignment Algorithm for MS/MS de Novo Sequencing Results
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DBDigger: Reorganized Proteomic Database Identification That Improves Flexibility and Speed
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A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics
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Prediction of Low-Energy Collision-Induced Dissociation Spectra of Peptides with Three or More Charges
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Probability Model for Assessing Proteins Assembled from Peptide Sequences Inferred from Tandem Mass Spectrometry Data
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Open Mass Spectrometry Search Algorithm
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Mass spectrometry-based proteomics
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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
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Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
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Dynamic Spectrum Quality Assessment and Iterative Computational Analysis of Shotgun Proteomic Data
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Improved Validation of Peptide MS/MS Assignments Using Spectral Intensity Prediction
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Interpretation of Shotgun Proteomic Data
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EBP, a Program for Protein Identification Using Multiple Tandem Mass Spectrometry Datasets
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Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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The COG database: new developments in phylogenetic classification of proteins from complete genomes
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Maximum Likelihood from Incomplete Data Via the EM Algorithm
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Initial Proteome Analysis of Model MicroorganismHaemophilus influenzaeStrain Rd KW20
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Data analysis: a Bayesian tutorial
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Development of Decreased-Gluten Wheat Enabled by Determination of the Genetic Basis of lys3a Barley
inferred← citeshttps://doi.org/10.1109/bibe.2017.00-56openalex-snapshot
Towards Centralized MS/MS Spectra Preprocessing: An Empirical Evaluation of Peptides Search Engines using Ground Truth Datasets
inferred← citeshttps://doi.org/10.1109/bibm.2017.8217951openalex-snapshot
Deep learning-based MSMS spectra reduction in support of running multiple protein search engines on cloud
inferred← citeshttps://doi.org/10.1109/icbbe.2010.5516290openalex-snapshot
Statistical Analysis of Mascot Peptide Identification with Active Logistic Regression
inferred← citeshttps://doi.org/10.1109/tcbb.2012.29openalex-snapshot
Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information
inferred← citeshttps://doi.org/10.1111/jvim.16070openalex-snapshot
Light chain myeloma and detection of free light chains in serum and urine of dogs and cats
inferred← citeshttps://doi.org/10.1111/tpj.15578openalex-snapshot
Symbiotic responses of Lotus japonicus to two isogenic lines of a mycorrhizal fungus differing in the presence/absence of an endobacterium
inferred← citeshttps://doi.org/10.1126/scisignal.2001827openalex-snapshot
Proteomic Analysis of Integrin Adhesion ComplexesA presentation from the 6th British Society for Proteome Research (BSPR)–European Bioinformatics Institute (EBI) Meeting “Multiscale Proteomics: From Cells to Organisms” at the Wellcome Trust Conference Centre, Cambridge, UK, 14 to 16 July 2009. The…
inferred← citeshttps://doi.org/10.1128/iai.00182-18openalex-snapshot
Identification of Surface Epitopes Associated with Protection against Highly Immune-Evasive VlsE-Expressing Lyme Disease Spirochetes
inferred← citeshttps://doi.org/10.1155/2021/7660113openalex-snapshot
Estimation of the Conditional Probability Using a Stochastic Gradient Process
inferred← citeshttps://doi.org/10.1179/his.2010.33.4.165openalex-snapshot
Proteomic Profiling From Paraffin-Embedded Tissue Sections by Mass-Spectrometry: A Novel Approach with Wide-Ranging Potential Applications in Pathology
inferred← citeshttps://doi.org/10.1186/1471-2164-10-61openalex-snapshot
Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
inferred← citeshttps://doi.org/10.1186/1471-2164-12-358openalex-snapshot
Identification of alternative splice variants in Aspergillus flavus through comparison of multiple tandem MS search algorithms
inferred← citeshttps://doi.org/10.1186/1471-2229-10-7openalex-snapshot
Analysis of expressed sequence tags from a single wheat cultivar facilitates interpretation of tandem mass spectrometry data and discrimination of gamma gliadin proteins that may play different functional roles in flour
inferred← citeshttps://doi.org/10.1186/s12014-015-9085-6openalex-snapshot
Comparative proteomic analysis of hypertrophic chondrocytes in osteoarthritis
inferred← citeshttps://doi.org/10.1186/s12859-015-0714-xopenalex-snapshot
Scientific workflow optimization for improved peptide and protein identification
inferred← citeshttps://doi.org/10.1186/s12915-019-0713-xopenalex-snapshot
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi
inferred← citeshttps://doi.org/10.1214/10-aoas341openalex-snapshot
Liquid chromatography mass spectrometry-based proteomics: Biological and technological aspects
inferred← citeshttps://doi.org/10.1371/journal.pone.0015438openalex-snapshot
RAId_aPS: MS/MS Analysis with Multiple Scoring Functions and Spectrum-Specific Statistics
inferred← citeshttps://doi.org/10.1371/journal.pone.0289784openalex-snapshot
Quantitative proteomic analysis of super soft kernel texture in soft white spring wheat
inferred← citeshttps://doi.org/10.1586/epr.12.51openalex-snapshot
Current methods for global proteome identification
inferred← citeshttps://doi.org/10.2174/157489312800604354openalex-snapshot
Database Searching in Mass Spectrometry Based Proteomics
inferred← citeshttps://doi.org/10.3390/ijms21072634openalex-snapshot
Identification and Characterization of the Lactating Mouse Mammary Gland Citrullinome
inferred← citeshttps://doi.org/10.3390/metabo13090970openalex-snapshot
Plasma Proteomics-Based Discovery of Mechanistic Biomarkers of Hyperbaric Stress and Pulmonary Oxygen Toxicity
inferred← citeshttps://doi.org/10.3390/microorganisms7090367openalex-snapshot
Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome
inferred← citeshttps://doi.org/10.3390/proteomes3030236openalex-snapshot
Proteome Characterization of Leaves in Common Bean
inferred← citeshttps://doi.org/10.3390/v14030506openalex-snapshot
Epigenomic and Proteomic Changes in Fetal Spleens Persistently Infected with Bovine Viral Diarrhea Virus: Repercussions for the Developing Immune System, Bone, Brain, and Heart
inferred← citeshttps://doi.org/10.4236/wjet.2016.43b002openalex-snapshot
The Structural Proteins of Bdellovibrio bacteriovorus Bacteriophage MAC-1
inferred← citeshttps://doi.org/10.5281/zenodo.35890openalex-snapshot
Harmonic Model For Mdct Based Audio Coding With Lpc Envelope
inferred← citeshttps://doi.org/10.53846/goediss-3185openalex-snapshot
Development of Fluorescence Activated Synaptosome Sorting (FASS) and analysis of VGLUT1 synapses from mouse brain
inferred← citeshttps://doi.org/10.5799/ahinjs.01.2014.03.0446openalex-snapshot
Human embryonic stem cells and microenvironment
inferred← citeshttps://doi.org/10.70675/f5b9ae4fz21ffz4c4azbe12zca5959d63295openalex-snapshot
Progress towards a better proteome characterization by quantitative mass spectrometry method development and proteogenomics
inferred← citeshttps://doi.org/10.7554/elife.45284openalex-snapshot
An ESCRT-LEM protein surveillance system is poised to directly monitor the nuclear envelope and nuclear transport system
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