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Metabolic network structure determines key aspects of functionality and regulation
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Understanding the parts in terms of the whole
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Time hierarchies in the Escherichia coli carbohydrate uptake and metabolism
inferred← citeshttps://doi.org/10.1016/j.biosystems.2004.02.004openalex-snapshot
Gene duplication and hierarchical modularity in intracellular interaction networks
inferred← citeshttps://doi.org/10.1016/j.biosystems.2004.06.004openalex-snapshot
Metabolic pathway analysis of enzyme-deficient human red blood cells
inferred← citeshttps://doi.org/10.1016/j.biosystems.2005.04.008openalex-snapshot
The generalized flux-minimization method and its application to metabolic networks affected by enzyme deficiencies
inferred← citeshttps://doi.org/10.1016/j.biosystems.2005.04.009openalex-snapshot
Generalized concept of minimal cut sets in biochemical networks
inferred← citeshttps://doi.org/10.1016/j.biosystems.2006.03.004openalex-snapshot
Role of cascades in converting oscillatory signals into stationary step-like responses
inferred← citeshttps://doi.org/10.1016/j.biosystems.2006.06.002openalex-snapshot
Alternative routes and mutational robustness in complex regulatory networks
inferred← citeshttps://doi.org/10.1016/j.biosystems.2008.09.002openalex-snapshot
Analysis of metabolic network based on conservation of molecular structure
inferred← citeshttps://doi.org/10.1016/j.biosystems.2009.11.004openalex-snapshot
A note on the complexity of finding and enumerating elementary modes
inferred← citeshttps://doi.org/10.1016/j.biosystems.2011.04.005openalex-snapshot
Do elementary flux modes combine linearly at the “atomic” level? Integrating tracer-based metabolomics data and elementary flux modes
inferred← citeshttps://doi.org/10.1016/j.biosystems.2011.10.003openalex-snapshot
Construction and elementary mode analysis of a metabolic model for Shewanella oneidensis MR-1
inferred← citeshttps://doi.org/10.1016/j.biosystems.2013.02.003openalex-snapshot
Finding minimal generating set for metabolic network with reversible pathways
inferred← citeshttps://doi.org/10.1016/j.biosystems.2013.03.014openalex-snapshot
Robustness and aging—A systems-level perspective
inferred← citeshttps://doi.org/10.1016/j.biosystems.2015.09.001openalex-snapshot
Constraints based analysis of extended cybernetic models
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2016.05.011openalex-snapshot
Microbial production of propanol
inferred← citeshttps://doi.org/10.1016/j.bpc.2005.11.011openalex-snapshot
Dissipation and maintenance of stable states in an enzymatic system: Analysis and simulation
inferred← citeshttps://doi.org/10.1016/j.bpj.2010.02.052openalex-snapshot
IGERS: Inferring Gibbs Energy Changes of Biochemical Reactions from Reaction Similarities
inferred← citeshttps://doi.org/10.1016/j.bpj.2013.11.2960openalex-snapshot
Cutting the Wires: Modularization of Cellular Networks for Experimental Design
inferred← citeshttps://doi.org/10.1016/j.bpj.2017.06.018openalex-snapshot
Thermodynamic Constraints Improve Metabolic Networks
inferred← citeshttps://doi.org/10.1016/j.cej.2020.126485openalex-snapshot
Finite representation of reaction kinetics in unbounded biopolymer structures
inferred← citeshttps://doi.org/10.1016/j.cell.2004.09.008openalex-snapshot
Robustness of Cellular Functions
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Correlation-enhanced viable core in metabolic networks
inferred← citeshttps://doi.org/10.1016/j.chempr.2020.02.009openalex-snapshot
Dissipative Self-Assembly of Dynamic Multicompartmentalized Microsystems with Light-Responsive Behaviors
inferred← citeshttps://doi.org/10.1016/j.cmet.2014.07.021openalex-snapshot
Mapping the Inner Workings of the Microbiome: Genomic- and Metagenomic-Based Study of Metabolism and Metabolic Interactions in the Human Microbiome
inferred← citeshttps://doi.org/10.1016/j.cnd.2011.11.007openalex-snapshot
La métabolomique : de nouvelles perspectives en nutrition humaine
inferred← citeshttps://doi.org/10.1016/j.compchemeng.2004.08.026openalex-snapshot
A theoretical framework for detecting signal transfer routes in signalling networks
inferred← citeshttps://doi.org/10.1016/j.compchemeng.2006.05.042openalex-snapshot
Signal transduction and regulation in bacteria
inferred← citeshttps://doi.org/10.1016/j.compchemeng.2017.10.003openalex-snapshot
Interference of the oscillating glycolysis with the oscillating tryptophan synthesis in the E. coli cells
inferred← citeshttps://doi.org/10.1016/j.compchemeng.2018.01.022openalex-snapshot
Automated reaction generation for polymer networks
inferred← citeshttps://doi.org/10.1016/j.copbio.2003.11.003openalex-snapshot
Use of genome-scale microbial models for metabolic engineering
inferred← citeshttps://doi.org/10.1016/j.copbio.2004.02.002openalex-snapshot
Genome data mining of lactic acid bacteria: the impact of bioinformatics
inferred← citeshttps://doi.org/10.1016/j.copbio.2004.03.008openalex-snapshot
Genomic and mechanistic insights into the biodegradation of organic pollutants
inferred← citeshttps://doi.org/10.1016/j.copbio.2005.03.001openalex-snapshot
Functional ingredient production: application of global metabolic models
inferred← citeshttps://doi.org/10.1016/j.dam.2008.06.035openalex-snapshot
Path finding approaches and metabolic pathways
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Rosennean Complexity and its relevance to ecology
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Re-engineering of an Escherichia coli K-12 strain for the efficient production of recombinant human Interferon Gamma
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From molecular networks to qualitative cell behavior
inferred← citeshttps://doi.org/10.1016/j.febslet.2007.04.067openalex-snapshot
Essentiality is an emergent property of metabolic network wiring
inferred← citeshttps://doi.org/10.1016/j.febslet.2009.10.074openalex-snapshot
Systems analysis of cellular networks under uncertainty
inferred← citeshttps://doi.org/10.1016/j.heliyon.2021.e06997openalex-snapshot
Self-selection of evolutionary strategies: adaptive versus non-adaptive forces
inferred← citeshttps://doi.org/10.1016/j.ifacol.2021.08.318openalex-snapshot
Selection of a Minimal Suboptimal Set of EFMs for Dynamic Metabolic Modelling
inferred← citeshttps://doi.org/10.1016/j.ifacol.2022.07.449openalex-snapshot
Linking process and metabolic modelling for the estimation of carbon flux distribution in Corynebacterium glutamicum growth in spent sulfite liquor
inferred← citeshttps://doi.org/10.1016/j.ijproman.2014.11.003openalex-snapshot
Evolutionary analysis of the collaboration networks within National Quality Award Projects of China
inferred← citeshttps://doi.org/10.1016/j.isci.2021.103730openalex-snapshot
Metabolic signatures of regulation by phosphorylation and acetylation
inferred← citeshttps://doi.org/10.1016/j.isci.2022.104681openalex-snapshot
Quantitative modeling of pentose phosphate pathway response to oxidative stress reveals a cooperative regulatory strategy
inferred← citeshttps://doi.org/10.1016/j.jbi.2007.05.007openalex-snapshot
An algorithm for modularization of MAPK and calcium signaling pathways: Comparative analysis among different species
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Drug targets for tumorigenesis: Insights from structural analysis of EGFR signaling network
inferred← citeshttps://doi.org/10.1016/j.jbiosc.2010.01.015openalex-snapshot
Use of maximum entropy principle with Lagrange multipliers extends the feasibility of elementary mode analysis
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