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Analysis of the bread wheat genome using whole-genome shotgun sequencing

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Chromosome Manipulations and Plant Genetics

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Characterisation of the wheat genome by renaturation kinetics

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Rapid, Repeated, and Clustered Loss of Duplicate Genes in Allopolyploid Plant Populations of Independent Origin

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Cereal Genome Evolution: Grasses, line up and form a circle

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Genetic Control of the Cytologically Diploid Behaviour of Hexaploid Wheat

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Pack-MULE transposable elements mediate gene evolution in plants

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The map-based sequence of the rice genome

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Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize

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Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

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STUDIES OF ISOZYME PATTERNS IN NULLISOMIC-TETRASOMIC COMBINATIONS OF HEXAPLOID WHEAT

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Grinding up Wheat: A Massive Loss of Nucleotide Diversity Since Domestication

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Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize.

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inferredcites →https://doi.org/10.1111/j.1467-7652.2011.00628.xopenalex-snapshot

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inferredcites →https://doi.org/10.1186/gb-2009-10-10-r111openalex-snapshot

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inferredcites →https://doi.org/10.1371/journal.pgen.1002411openalex-snapshot

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inferredcites →https://doi.org/10.1534/genetics.108.096941openalex-snapshot

Nonadditive Expression of Homoeologous Genes Is Established Upon Polyploidization in Hexaploid Wheat

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inferred← citeshttps://doi.org/10.1007/s00122-021-04019-2openalex-snapshot

Fine mapping of QPm.caas-3BS, a stable QTL for adult-plant resistance to powdery mildew in wheat (Triticum aestivum L.)

inferred← citeshttps://doi.org/10.1007/s00122-024-04730-wopenalex-snapshot

Wheat improvement through advances in single nucleotide polymorphism (SNP) detection and genotyping with a special emphasis on rust resistance

inferred← citeshttps://doi.org/10.1007/s00122-024-04740-8openalex-snapshot

EMS-induced missense mutation in TaCHLI-7D affects leaf color and yield-related traits in wheat

inferred← citeshttps://doi.org/10.1007/s00122-024-04748-0openalex-snapshot

Physical map of QTL for eleven agronomic traits across fifteen environments, identification of related candidate genes, and development of KASP markers with emphasis on terminal heat stress tolerance in common wheat

inferred← citeshttps://doi.org/10.1007/s00122-025-04965-1openalex-snapshot

Genomic analysis of two all-stage stripe rust resistance genes in the Vavilov wheat landrace AGG40807WHEA1

inferred← citeshttps://doi.org/10.1007/s00122-026-05275-wopenalex-snapshot

High‑density mapping of stripe rust resistance gene YrH8 in wheat line Hangmai 8

inferred← citeshttps://doi.org/10.1007/s00239-017-9810-zopenalex-snapshot

Evolution of the Aux/IAA Gene Family in Hexaploid Wheat

inferred← citeshttps://doi.org/10.1007/s00299-013-1472-8openalex-snapshot

Copy number variation of transposable elements in Triticum–Aegilops genus suggests evolutionary and revolutionary dynamics following allopolyploidization

inferred← citeshttps://doi.org/10.1007/s00299-013-1475-5openalex-snapshot

Nucleolar dominance and different genome behaviors in hybrids and allopolyploids

inferred← citeshttps://doi.org/10.1007/s00299-014-1655-yopenalex-snapshot

Identification of wheat non-specific lipid transfer proteins involved in chilling tolerance

inferred← citeshttps://doi.org/10.1007/s00299-015-1874-xopenalex-snapshot

Assessment of genetic and epigenetic changes in virus-free garlic (Allium sativum L.) plants obtained by meristem culture followed by in vitro propagation

inferred← citeshttps://doi.org/10.1007/s00299-017-2141-0openalex-snapshot

Genome-wide identification and characterization of NB-ARC resistant genes in wheat (Triticum aestivum L.) and their expression during leaf rust infection

inferred← citeshttps://doi.org/10.1007/s00299-017-2213-1openalex-snapshot

Genome-wide analysis of a recently active retrotransposon, Au SINE, in wheat: content, distribution within subgenomes and chromosomes, and gene associations

inferred← citeshttps://doi.org/10.1007/s00299-020-02591-3openalex-snapshot

Characterization of the leaf rust responsive ARF genes in wheat (Triticum aestivum L.)

inferred← citeshttps://doi.org/10.1007/s00299-024-03199-7openalex-snapshot

Activation of the native PHYTOENE SYNTHASE 1 promoter by modifying near-miss cis-acting elements induces carotenoid biosynthesis in embryogenic rice callus

inferred← citeshttps://doi.org/10.1007/s00299-025-03465-2openalex-snapshot

Research on the regulation mechanism of drought tolerance in wheat

inferred← citeshttps://doi.org/10.1007/s00412-017-0635-8openalex-snapshot

Identification of all homoeologous chromosomes of newly synthetic allotetraploid Cucumis × hytivus and its wild parent reveals stable subgenome structure

inferred← citeshttps://doi.org/10.1007/s00425-013-1961-6openalex-snapshot

Applications and challenges of next-generation sequencing in Brassica species

inferred← citeshttps://doi.org/10.1007/s00425-014-2153-8openalex-snapshot

Genome-wide fungal stress responsive miRNA expression in wheat

inferred← citeshttps://doi.org/10.1007/s00425-016-2600-9openalex-snapshot

Uncovering leaf rust responsive miRNAs in wheat (Triticum aestivum L.) using high-throughput sequencing and prediction of their targets through degradome analysis

inferred← citeshttps://doi.org/10.1007/s00425-017-2753-1openalex-snapshot

Molecular and phenotypic characterization of transgenic wheat and sorghum events expressing the barley alanine aminotransferase

inferred← citeshttps://doi.org/10.1007/s00425-018-3033-4openalex-snapshot

Physical location of tandem repeats in the wheat genome and application for chromosome identification

inferred← citeshttps://doi.org/10.1007/s00425-022-03829-yopenalex-snapshot

Epigenetics of wheat–rust interaction: an update

inferred← citeshttps://doi.org/10.1007/s00425-024-04362-wopenalex-snapshot

Thylakoid ultrastructural variations in chlorophyll-deficient wheat: aberrations or structural acclimation?

inferred← citeshttps://doi.org/10.1007/s00425-025-04667-4openalex-snapshot

Transcriptome analysis reveals the key roles of TaSMP1 and ABA signaling pathway in wheat seed dormancy and germination

inferred← citeshttps://doi.org/10.1007/s00425-026-04952-wopenalex-snapshot

Polyploid plant genomes complexity and the challenges of sequencing

inferred← citeshttps://doi.org/10.1007/s00425-026-05068-xopenalex-snapshot

Identification of CAMTA transcription factors and functional analysis of OsCAMTA4 in rice blast and salt stress

inferred← citeshttps://doi.org/10.1007/s00438-014-0834-4openalex-snapshot

Characterization of novel wheat NBS domain-containing sequences and their utilization, in silico, for genome-scale R-gene mining

inferred← citeshttps://doi.org/10.1007/s00438-014-0849-xopenalex-snapshot

Transcriptome-wide identification of bread wheat WRKY transcription factors in response to drought stress

inferred← citeshttps://doi.org/10.1007/s00438-014-0890-9openalex-snapshot

Transcriptome-wide analysis of WRKY transcription factors in wheat and their leaf rust responsive expression profiling

inferred← citeshttps://doi.org/10.1007/s00438-014-0909-2openalex-snapshot

Full-genome identification and characterization of NBS-encoding disease resistance genes in wheat

inferred← citeshttps://doi.org/10.1007/s00438-014-0948-8openalex-snapshot

Dynamic evolution of NBS–LRR genes in bread wheat and its progenitors

inferred← citeshttps://doi.org/10.1007/s00438-015-1087-6openalex-snapshot

Retention of functional genes for S19 ribosomal protein in both the mitochondrion and nucleus for over 60 million years

inferred← citeshttps://doi.org/10.1007/s00438-015-1152-1openalex-snapshot

Genome wide identification of C1-2i zinc finger proteins and their response to abiotic stress in hexaploid wheat

inferred← citeshttps://doi.org/10.1007/s00438-017-1308-2openalex-snapshot

Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposons

inferred← citeshttps://doi.org/10.1007/s00438-017-1401-6openalex-snapshot

Mapping causal mutations by exome sequencing in a wheat TILLING population: a tall mutant case study

inferred← citeshttps://doi.org/10.1007/s00438-018-1428-3openalex-snapshot

The genome sequence of ‘Kurodagosun’, a major carrot variety in Japan and China, reveals insights into biological research and carrot breeding

inferred← citeshttps://doi.org/10.1007/s00709-018-1237-xopenalex-snapshot

Comparative analysis of transcriptome in two wheat genotypes with contrasting levels of drought tolerance

inferred← citeshttps://doi.org/10.1007/s10068-022-01043-wopenalex-snapshot

High-throughput SNP markers for authentication of Korean wheat cultivars based on seven complete plastomes and the nuclear genome

inferred← citeshttps://doi.org/10.1007/s10142-013-0317-4openalex-snapshot

Wheat Zapper: a flexible online tool for colinearity studies in grass genomes

inferred← citeshttps://doi.org/10.1007/s10142-013-0319-2openalex-snapshot

Advances in biotechnology and informatics to link variation in the genome to phenotypes in plants and animals

inferred← citeshttps://doi.org/10.1007/s10142-013-0357-9openalex-snapshot

New wheat microRNA using whole-genome sequence

inferred← citeshttps://doi.org/10.1007/s10142-015-0434-3openalex-snapshot

Discoveries and advances in plant and animal genomics

inferred← citeshttps://doi.org/10.1007/s10142-016-0476-1openalex-snapshot

Transcriptome dynamics of a susceptible wheat upon Fusarium head blight reveals that molecular responses to Fusarium graminearum infection fit over the grain development processes

inferred← citeshttps://doi.org/10.1007/s10142-016-0487-yopenalex-snapshot

Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors

inferred← citeshttps://doi.org/10.1007/s10142-017-0563-yopenalex-snapshot

High-throughput SNP genotyping of modern and wild emmer wheat for yield and root morphology using a combined association and linkage analysis

inferred← citeshttps://doi.org/10.1007/s10265-020-01202-2openalex-snapshot

The mechanisms and significance of the positional control of centromeres and telomeres in plants

inferred← citeshttps://doi.org/10.1007/s10528-016-9729-xopenalex-snapshot

Genetic Diversity, Population Structure, and Linkage Disequilibrium in Bread Wheat (Triticum aestivum L.)

inferred← citeshttps://doi.org/10.1007/s10534-017-9997-xopenalex-snapshot

Genome-wide exploration of metal tolerance protein (MTP) genes in common wheat (Triticum aestivum): insights into metal homeostasis and biofortification

inferred← citeshttps://doi.org/10.1007/s10535-015-0536-8openalex-snapshot

Unravelling genome dynamics in Arabidopsis synthetic auto and allopolyploid species

inferred← citeshttps://doi.org/10.1007/s10535-018-0786-3openalex-snapshot

Comparative analysis of DNA methylation changes in two contrasting wheat genotypes under water deficit

inferred← citeshttps://doi.org/10.1007/s10658-014-0574-7openalex-snapshot

Identification of a wheat polygalacturonase-inhibiting protein involved in Fusarium head blight resistance

inferred← citeshttps://doi.org/10.1007/s10681-013-0915-1openalex-snapshot

Transferability of rice SSR markers to Miscanthus sinensis, a potential biofuel crop

inferred← citeshttps://doi.org/10.1007/s10681-014-1314-yopenalex-snapshot

Genomic regions associated with grain yield under drought stress in wheat (Triticum aestivum L.)

inferred← citeshttps://doi.org/10.1007/s10681-017-2002-5openalex-snapshot

Mapping QTL for stay-green and agronomic traits in wheat under diverse water regimes

inferred← citeshttps://doi.org/10.1007/s10681-017-2039-5openalex-snapshot

Development of NBS-related microsatellite (NRM) markers in hexaploid wheat

inferred← citeshttps://doi.org/10.1007/s10681-018-2205-4openalex-snapshot

Practical breeding strategies to improve resistance to Septoria tritici blotch of wheat

inferred← citeshttps://doi.org/10.1007/s10681-018-2276-2openalex-snapshot

Molecular cytogenetic characterization of an Agropyron cristatum 6PL chromosome segment conferring superior kernel traits in wheat

inferred← citeshttps://doi.org/10.1007/s10681-019-2432-3openalex-snapshot

Mapping of quantitative trait loci (QTL) for resistance against Zymoseptoria tritici in the winter spelt wheat accession HTRI1410 (Triticum aestivum subsp. spelta)

inferred← citeshttps://doi.org/10.1007/s10681-022-03111-yopenalex-snapshot

Genetic and genomic approaches for breeding rust resistance in wheat

inferred← citeshttps://doi.org/10.1007/s10722-014-0167-5openalex-snapshot

Genetic effect of locus B2 inhibiting awning in double-ditelosomic 6B of Triticum durum DR147

inferred← citeshttps://doi.org/10.1007/s10722-015-0301-zopenalex-snapshot

TaqSH1-D, wheat ortholog of rice seed shattering gene qSH1, maps to the interval of a rachis fragility QTL on chromosome 3DL of common wheat (Triticum aestivum)

inferred← citeshttps://doi.org/10.1007/s10722-016-0380-5openalex-snapshot

Into the vault of the Vavilov wheats: old diversity for new alleles

inferred← citeshttps://doi.org/10.1007/s10725-020-00621-4openalex-snapshot

Assessment of biochemical and physiological parameters of durum wheat genotypes at the seedling stage during polyethylene glycol-induced water stress

inferred← citeshttps://doi.org/10.1007/s10725-024-01191-5openalex-snapshot

TaWRKY24-1D, interacts with TaERFL1a, regulates DHAR-mediated ASA-GSH biosynthesis to enhance drought tolerance in wheat

inferred← citeshttps://doi.org/10.1007/s11032-014-0052-0openalex-snapshot

Molecular mapping of a recessive powdery mildew resistance gene in spelt wheat cultivar Hubel

inferred← citeshttps://doi.org/10.1007/s11032-014-0094-3openalex-snapshot

Validation of a 1DL earliness per se (eps) flowering QTL in bread wheat (Triticum aestivum)

inferred← citeshttps://doi.org/10.1007/s11032-014-0181-5openalex-snapshot

A dense durum wheat × T. dicoccum linkage map based on SNP markers for the study of seed morphology

inferred← citeshttps://doi.org/10.1007/s11032-014-0182-4openalex-snapshot

Novel quantitative trait loci underlying major domestication traits in tetraploid wheat

inferred← citeshttps://doi.org/10.1007/s11032-015-0347-9openalex-snapshot

Grain-specific reduction in lipoxygenase activity improves flour color quality and seed longevity in common wheat

inferred← citeshttps://doi.org/10.1007/s11032-016-0514-7openalex-snapshot

Construction of a high-density SNP genetic map in flue-cured tobacco based on SLAF-seq

inferred← citeshttps://doi.org/10.1007/s11032-016-0585-5openalex-snapshot

TaELF3-1DL, a homolog of ELF3, is associated with heading date in bread wheat

inferred← citeshttps://doi.org/10.1007/s11032-017-0629-5openalex-snapshot

Detection of alien genetic introgressions in bread wheat using dot-blot genomic hybridisation

inferred← citeshttps://doi.org/10.1007/s11032-017-0728-3openalex-snapshot

Identification and mapping of a new powdery mildew resistance allele in the Chinese wheat landrace Hongyoumai

inferred← citeshttps://doi.org/10.1007/s11032-018-0809-yopenalex-snapshot

Development of intron targeted amplified polymorphic markers of metal homeostasis genes for monitoring their introgression from Aegilops species to wheat

inferred← citeshttps://doi.org/10.1007/s11033-018-4457-4openalex-snapshot

Phylogenetic analysis of upland cotton MATE gene family reveals a conserved subfamily involved in transport of proanthocyanidins

inferred← citeshttps://doi.org/10.1007/s11033-021-06282-4openalex-snapshot

Understanding the regulatory relationship of abscisic acid and bZIP transcription factors towards amylose biosynthesis in wheat

inferred← citeshttps://doi.org/10.1007/s11033-022-08036-2openalex-snapshot

An overview of genome-wide association mapping studies in Poaceae species (model crops: wheat and rice)

inferred← citeshttps://doi.org/10.1007/s11103-013-0110-8openalex-snapshot

A review of the occurrence of Grain softness protein-1 genes in wheat (Triticum aestivum L.)

inferred← citeshttps://doi.org/10.1007/s11103-013-0121-5openalex-snapshot

Association of jacalin-related lectins with wheat responses to stresses revealed by transcriptional profiling

inferred← citeshttps://doi.org/10.1007/s11103-017-0637-1openalex-snapshot

Genome-wide identification, classification, evolutionary analysis and gene expression patterns of the protein kinase gene family in wheat and Aegilops tauschii

inferred← citeshttps://doi.org/10.1007/s11103-020-01088-7openalex-snapshot

Phylogenetic and ion-response analyses reveal a relationship between gene expansion and functional divergence in the Ca2+/cation antiporter family in Angiosperms

inferred← citeshttps://doi.org/10.1007/s11103-026-01745-3openalex-snapshot

Detailed re-analysis of satellitome mapping facilitated by the telomere-to-telomere (T2T) assembly of bread wheat genome

inferred← citeshttps://doi.org/10.1007/s11104-019-04260-1openalex-snapshot

Proteomics combined with BSMV-VIGS methods identified some N deficiency-responsive protein species and ABA role in wheat seedling

inferred← citeshttps://doi.org/10.1007/s11105-014-0750-0openalex-snapshot

The New Wheat Vernalization Response Allele Vrn-D1s is Caused by DNA Transposon Insertion in the First Intron

inferred← citeshttps://doi.org/10.1007/s11105-020-01259-2openalex-snapshot

Genome-Wide Identification and Analysis of GHMP Kinase Gene Superfamily in Bread Wheat (Triticum aestivum L.)

inferred← citeshttps://doi.org/10.1007/s11105-021-01326-2openalex-snapshot

Genome-Wide Identification Transcriptional Expression Analysis of E2F-DP Transcription Factor Family in Wheat

inferred← citeshttps://doi.org/10.1007/s11120-020-00726-xopenalex-snapshot

Effect of different light intensity on physiology, antioxidant capacity and photosynthetic characteristics on wheat seedlings under high CO2 concentration in a closed artificial ecosystem

inferred← citeshttps://doi.org/10.1007/s11427-017-9306-7openalex-snapshot

The chimeric genes in the hybrid lineage of Carassius auratus cuvieri (♀)×Carassius auratus red var. (♂)

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