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Genome-wide signatures of convergent evolution in echolocating mammals

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Convergent sequence evolution between echolocating bats and dolphins

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Cetaceans on a Molecular Fast Track to Ultrasonic Hearing

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The evolution of echolocation in bats

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The Cell Cycle and the Development and Regeneration of Hair Cells

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Spectral-tuning mechanisms of marine mammal rhodopsins and correlations with foraging depth

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Molecular evidence regarding the origin of echolocation and flight in bats

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Gene Ontology: tool for the unification of biology

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Parallel signatures of sequence evolution among hearing genes in echolocating mammals: an emerging model of genetic convergence

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Evolution of genes and genomes on the Drosophila phylogeny

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A high-resolution map of human evolutionary constraint using 29 mammals

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The Genetic Association Database

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Human Protein Reference Database

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Echolocation in dolphins and bats

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Microbat paraphyly and the convergent evolution of a key innovation in Old World rhinolophoid microbats

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The hearing gene Prestin reunites echolocating bats

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The Newick utilities: high-throughput phylogenetic tree processing in the U nix shell

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Human Protein Reference Database--2009 update

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KEGG for integration and interpretation of large-scale molecular data sets

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025789openalex-snapshot

Detection of convergent and parallel evolution at the amino acid sequence level

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

inferredcites →https://doi.org/10.1093/sysbio/syr089openalex-snapshot

Phylogenomic Analysis Resolves the Interordinal Relationships and Rapid Diversification of the Laurasiatherian Mammals

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Convergent Evolution of Hearing

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Echolocation in Bats and Dolphins

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inferred← citeshttps://doi.org/10.1038/s41467-023-41412-5openalex-snapshot

Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies

inferred← citeshttps://doi.org/10.1038/s41467-025-58428-8openalex-snapshot

Evolutionary sparse learning reveals the shared genetic basis of convergent traits

inferred← citeshttps://doi.org/10.1038/s41467-026-73110-3openalex-snapshot

Ecological and genomic signatures of the convergent evolution of planktivory in fossil and living reef fishes over deep time

inferred← citeshttps://doi.org/10.1038/s41559-017-0417-yopenalex-snapshot

Genome of the Tasmanian tiger provides insights into the evolution and demography of an extinct marsupial carnivore

inferred← citeshttps://doi.org/10.1038/s41559-022-01932-7openalex-snapshot

Detecting macroevolutionary genotype–phenotype associations using error-corrected rates of protein convergence

inferred← citeshttps://doi.org/10.1038/s41576-024-00691-4openalex-snapshot

Plant pangenomes for crop improvement, biodiversity and evolution

inferred← citeshttps://doi.org/10.1038/s41576-026-00933-7openalex-snapshot

The genetic foundations of convergent traits

inferred← citeshttps://doi.org/10.1038/s41586-020-2486-3openalex-snapshot

Six reference-quality genomes reveal evolution of bat adaptations

inferred← citeshttps://doi.org/10.1038/s41586-024-08471-0openalex-snapshot

Bat genomes illuminate adaptations to viral tolerance and disease resistance

inferred← citeshttps://doi.org/10.1038/s41586-025-09779-1openalex-snapshot

Progressive coevolution of the yeast centromere and kinetochore

inferred← citeshttps://doi.org/10.1038/s41598-018-29646-6openalex-snapshot

Retention and losses of ultraviolet-sensitive visual pigments in bats

inferred← citeshttps://doi.org/10.1038/s41598-018-34758-0openalex-snapshot

Deciphering the evolutionary signatures of pinnipeds using novel genome sequences: The first genomes of Phoca largha, Callorhinus ursinus, and Eumetopias jubatus

inferred← citeshttps://doi.org/10.1038/srep09506openalex-snapshot

The effect of music performance on the transcriptome of professional musicians

inferred← citeshttps://doi.org/10.1038/srep16550openalex-snapshot

Convergent evolution of marine mammals is associated with distinct substitutions in common genes

inferred← citeshttps://doi.org/10.1038/srep16561openalex-snapshot

Bats and Rodents Shape Mammalian Retroviral Phylogeny

inferred← citeshttps://doi.org/10.1038/srep21198openalex-snapshot

Detecting signatures of positive selection associated with musical aptitude in the human genome

inferred← citeshttps://doi.org/10.1038/srep27726openalex-snapshot

Phylogenomic analyses of bat subordinal relationships based on transcriptome data

inferred← citeshttps://doi.org/10.1038/srep39707openalex-snapshot

Convergent evidence for the molecular basis of musical traits

inferred← citeshttps://doi.org/10.1073/pnas.1511706112openalex-snapshot

Widespread convergence in toxin resistance by predictable molecular evolution

inferred← citeshttps://doi.org/10.1073/pnas.1515937112openalex-snapshot

Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies

inferred← citeshttps://doi.org/10.1073/pnas.1604084113openalex-snapshot

Taste for poison reevolves in fruit flies

inferred← citeshttps://doi.org/10.1073/pnas.1818532116openalex-snapshot

A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales

inferred← citeshttps://doi.org/10.1073/pnas.2418254122openalex-snapshot

Language models reveal a complex sequence basis for adaptive convergent evolution of protein functions

inferred← citeshttps://doi.org/10.1074/jbc.m117.793356openalex-snapshot

Gene duplication and neo-functionalization in the evolutionary and functional divergence of the metazoan copper transporters Ctr1 and Ctr2

inferred← citeshttps://doi.org/10.1086/686009openalex-snapshot

Convergent Evolution and the Origin of Complex Phenotypes in the Age of Systems Biology

inferred← citeshttps://doi.org/10.1086/692111openalex-snapshot

Toward a Predictive Framework for Convergent Evolution: Integrating Natural History, Genetic Mechanisms, and Consequences for the Diversity of Life

inferred← citeshttps://doi.org/10.1086/716015openalex-snapshot

Ecological Filtering and Exaptation in the Evolution of Marine Snakes

inferred← citeshttps://doi.org/10.1093/bib/bbag490openalex-snapshot

Systematic benchmarking and optimal strategy selection of cross-species integration methods

inferred← citeshttps://doi.org/10.1093/bioadv/vbae070openalex-snapshot

WGCCRR: a web-based tool for genome-wide screening of convergent indels and substitutions of amino acids

inferred← citeshttps://doi.org/10.1093/bioinformatics/btad623openalex-snapshot

CAAStools: a toolbox to identify and test Convergent Amino Acid Substitutions

inferred← citeshttps://doi.org/10.1093/cz/zoy048openalex-snapshot

Evolutionary ecology of chemosensation and its role in sensory drive

inferred← citeshttps://doi.org/10.1093/dnares/dsaa021openalex-snapshot

Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera

inferred← citeshttps://doi.org/10.1093/evolut/qpaf240openalex-snapshot

MoleRate: comparing molecular relative evolutionary rates to detect convergent evolution

inferred← citeshttps://doi.org/10.1093/g3journal/jkab069openalex-snapshot

Assessing evidence for adaptive evolution in two hearing-related genes important for high-frequency hearing in echolocating mammals

inferred← citeshttps://doi.org/10.1093/gbe/evaa137openalex-snapshot

Analysis of Genomic Sequence Data Reveals the Origin and Evolutionary Separation of Hawaiian Hoary Bat Populations

inferred← citeshttps://doi.org/10.1093/gbe/evab038openalex-snapshot

Genomic Evidence for Convergent Molecular Adaptation in Electric Fishes

inferred← citeshttps://doi.org/10.1093/gbe/evab113openalex-snapshot

Convergent Adaptation in Mitochondria of Phylogenetically Distant Birds: Does it Exist?

inferred← citeshttps://doi.org/10.1093/gbe/evab133openalex-snapshot

Hearing Sensitivity of Primates: Recurrent and Episodic Positive Selection in Hair Cells and Stereocilia Protein-Coding Genes

inferred← citeshttps://doi.org/10.1093/gbe/evac051openalex-snapshot

Phylogenomic Analyses Show Repeated Evolution of Hypertrophied Lips Among Lake Malawi Cichlid Fishes

inferred← citeshttps://doi.org/10.1093/gbe/evad187openalex-snapshot

AlexandrusPS: A User-Friendly Pipeline for the Automated Detection of Orthologous Gene Clusters and Subsequent Positive Selection Analysis

inferred← citeshttps://doi.org/10.1093/gbe/evae040openalex-snapshot

Accurate Detection of Convergent Mutations in Large Protein Alignments With ConDor

inferred← citeshttps://doi.org/10.1093/gbe/evaf150openalex-snapshot

From Trees to Traits: A Review of Advances in PhyloG2P Methods and Future Directions

inferred← citeshttps://doi.org/10.1093/gbe/evaf178openalex-snapshot

Inference of Cytochrome P450 Evolutionary History Using Structural and Physicochemical Metrics

inferred← citeshttps://doi.org/10.1093/gbe/evag035openalex-snapshot

Assessing the Potential of Ancient Protein Sequences in the Study of Hominid Evolution

inferred← citeshttps://doi.org/10.1093/gbe/evu169openalex-snapshot

Horizontal Transfers and Gene Losses in the Phospholipid Pathway of Bartonella Reveal Clues about Early Ecological Niches

inferred← citeshttps://doi.org/10.1093/gbe/evw037openalex-snapshot

Evolutionary Genetics of Hypoxia Tolerance in Cetaceans during Diving

inferred← citeshttps://doi.org/10.1093/gbe/evw211openalex-snapshot

Substitutions in the Glycogenin-1 Gene Are Associated with the Evolution of Endothermy in Sharks and Tunas

inferred← citeshttps://doi.org/10.1093/gbe/evx140openalex-snapshot

Testing Convergent Evolution in Auditory Processing Genes between Echolocating Mammals and the Aye-Aye, a Percussive-Foraging Primate

inferred← citeshttps://doi.org/10.1093/gigascience/giy116openalex-snapshot

Exploring the genome and transcriptome of the cave nectar bat Eonycteris spelaea with PacBio long-read sequencing

inferred← citeshttps://doi.org/10.1093/icb/icu048openalex-snapshot

Comparative Genomics of Mammalian Hibernators Using Gene Networks

inferred← citeshttps://doi.org/10.1093/jhered/esaf070openalex-snapshot

Reduced gene expression and missense mutations in the transporter protein SLC45A2 in a hypopigmented Egyptian rousette fruit bat ( Rousettus aegyptiacus )

inferred← citeshttps://doi.org/10.1093/jhered/esaf087openalex-snapshot

Genomic resources for comparative analyses of avian obligate brood parasitism

inferred← citeshttps://doi.org/10.1093/jhered/esw044openalex-snapshot

Genomic Methods Take the Plunge: Recent Advances in High-Throughput Sequencing of Marine Mammals

inferred← citeshttps://doi.org/10.1093/jmammal/gyy184openalex-snapshot

Emerging genomic applications in mammalian ecology, evolution, and conservation

inferred← citeshttps://doi.org/10.1093/molbev/msaa028openalex-snapshot

Phenotypic Convergence Is Not Mirrored at the Protein Level in a Lizard Adaptive Radiation

inferred← citeshttps://doi.org/10.1093/molbev/msaa070openalex-snapshot

Positive Selection and Inactivation in the Vision and Hearing Genes of Cetaceans

inferred← citeshttps://doi.org/10.1093/molbev/msaa076openalex-snapshot

Genomic Signature of Shifts in Selection in a Subalpine Ant and Its Physiological Adaptations

inferred← citeshttps://doi.org/10.1093/molbev/msaa077openalex-snapshot

Unmatched Level of Molecular Convergence among Deeply Divergent Complex Multicellular Fungi

inferred← citeshttps://doi.org/10.1093/molbev/msaa297openalex-snapshot

Eusociality Shapes Convergent Patterns of Molecular Evolution across Mitochondrial Genomes of Snapping Shrimps

inferred← citeshttps://doi.org/10.1093/molbev/msab226openalex-snapshot

Refining Convergent Rate Analysis with Topology in Mammalian Longevity and Marine Transitions

inferred← citeshttps://doi.org/10.1093/molbev/msad121openalex-snapshot

Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae)

inferred← citeshttps://doi.org/10.1093/molbev/msad208openalex-snapshot

Genomic Signatures Associated with Transitions to Viviparity in Cyprinodontiformes

inferred← citeshttps://doi.org/10.1093/molbev/msae208openalex-snapshot

Comparative Genomics Provides Insights into Adaptive Evolution and Demographics of Bats

inferred← citeshttps://doi.org/10.1093/molbev/msu132openalex-snapshot

OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals

inferred← citeshttps://doi.org/10.1093/molbev/msu194openalex-snapshot

Parallel Sites Implicate Functional Convergence of the Hearing Gene Prestin among Echolocating Mammals

inferred← citeshttps://doi.org/10.1093/molbev/msu329openalex-snapshot

How and Why Overcome the Impediments to Resolution: Lessons from rhinolophid and hipposiderid Bats

inferred← citeshttps://doi.org/10.1093/molbev/msu330openalex-snapshot

Comparative Transcriptomics of Convergent Evolution: Different Genes but Conserved Pathways Underlie Caste Phenotypes across Lineages of Eusocial Insects

inferred← citeshttps://doi.org/10.1093/molbev/msv008openalex-snapshot

Convergent Evolution of Ribonuclease H in LTR Retrotransposons and Retroviruses

inferred← citeshttps://doi.org/10.1093/molbev/msv013openalex-snapshot

Determining the Null Model for Detecting Adaptive Convergence from Genomic Data: A Case Study using Echolocating Mammals

inferred← citeshttps://doi.org/10.1093/molbev/msv014openalex-snapshot

No Genome-Wide Protein Sequence Convergence for Echolocation

inferred← citeshttps://doi.org/10.1093/molbev/msv041openalex-snapshot

Nonadaptive Amino Acid Convergence Rates Decrease over Time

inferred← citeshttps://doi.org/10.1093/molbev/msv091openalex-snapshot

Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations?

inferred← citeshttps://doi.org/10.1093/molbev/msw015openalex-snapshot

The Diversity and Molecular Evolution of B-Cell Receptors during Infection

inferred← citeshttps://doi.org/10.1093/molbev/msw197openalex-snapshot

Gene Tree Discordance Can Generate Patterns of Diminishing Convergence over Time

inferred← citeshttps://doi.org/10.1093/molbev/msw222openalex-snapshot

Functional Effects of a Retained Ancestral Polymorphism inPrestin

inferred← citeshttps://doi.org/10.1093/molbev/msw277openalex-snapshot

Genome-Wide Convergence during Evolution of Mangroves from Woody Plants

inferred← citeshttps://doi.org/10.1093/molbev/msx109openalex-snapshot

Gene Tree Discordance Does Not Explain Away the Temporal Decline of Convergence in Mammalian Protein Sequence Evolution

inferred← citeshttps://doi.org/10.1093/molbev/msx247openalex-snapshot

Different Genomic Changes Underlie Adaptive Evolution in Populations of Contrasting History

inferred← citeshttps://doi.org/10.1093/molbev/msy105openalex-snapshot

Biological Processes Modulating Longevity across Primates: A Phylogenetic Genome-Phenome Analysis

inferred← citeshttps://doi.org/10.1093/molbev/msy114openalex-snapshot

Accurate Detection of Convergent Amino-Acid Evolution with PCOC

inferred← citeshttps://doi.org/10.1093/molbev/msy140openalex-snapshot

Functional Shifts in Bat Dim-Light Visual Pigment Are Associated with Differing Echolocation Abilities and Reveal Molecular Adaptation to Photic-Limited Environments

inferred← citeshttps://doi.org/10.1093/molbev/msy161openalex-snapshot

Limited Evidence for Parallel Molecular Adaptations Associated with the Subterranean Niche in Mammals: A Comparative Study of Three Superorders

inferred← citeshttps://doi.org/10.1093/molbev/msz049openalex-snapshot

Bayesian Detection of Convergent Rate Changes of Conserved Noncoding Elements on Phylogenetic Trees

inferred← citeshttps://doi.org/10.1093/molbev/msz076openalex-snapshot

Different Genomic Changes Underlie Adaptive Evolution in Populations of Contrasting History

inferred← citeshttps://doi.org/10.1093/molbev/msz107openalex-snapshot

Robust Method for Detecting Convergent Shifts in Evolutionary Rates

inferred← citeshttps://doi.org/10.1093/nar/gkx179openalex-snapshot

PosiGene: automated and easy-to-use pipeline for genome-wide detection of positively selected genes

inferred← citeshttps://doi.org/10.1093/nar/gkx302openalex-snapshot

Gene ORGANizer: linking genes to the organs they affect

inferred← citeshttps://doi.org/10.1093/nargab/lqz006openalex-snapshot

A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes

inferred← citeshttps://doi.org/10.1093/nsr/nwaa027openalex-snapshot

Convergent adaptation of the genomes of woody plants at the land–sea interface

inferred← citeshttps://doi.org/10.1093/nsr/nwaa076openalex-snapshot

Adaptive convergence at the genomic level—prevalent, uncommon or very rare?

inferred← citeshttps://doi.org/10.1093/nsr/nwaf591openalex-snapshot

Evidence for echolocation in Asian shrew moles

inferred← citeshttps://doi.org/10.1093/nsr/nwy021openalex-snapshot

On the low reproducibility of cancer studies

inferred← citeshttps://doi.org/10.1093/sysbio/syw018openalex-snapshot

Gene Tree Discordance Causes Apparent Substitution Rate Variation

inferred← citeshttps://doi.org/10.1093/sysbio/syw068openalex-snapshot

Novel Approaches for Phylogenetic Inference from Morphological Data and Total-Evidence Dating in Squamate Reptiles (Lizards, Snakes, and Amphisbaenians)

inferred← citeshttps://doi.org/10.1093/sysbio/syz062openalex-snapshot

Interrogating Genomic-Scale Data for Squamata (Lizards, Snakes, and Amphisbaenians) Shows no Support for Key Traditional Morphological Relationships

inferred← citeshttps://doi.org/10.1098/rsos.150156openalex-snapshot

A phylogenomic analysis of the role and timing of molecular adaptation in the aquatic transition of cetartiodactyl mammals

inferred← citeshttps://doi.org/10.1098/rspb.2015.1203openalex-snapshot

Diffusion tensor imaging of dolphin brains reveals direct auditory pathway to temporal lobe

inferred← citeshttps://doi.org/10.1098/rspb.2017.2835openalex-snapshot

The role of ecological factors in shaping bat cone opsin evolution

showing the first 200 of 382

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