On the public citation graph
The landscape of accessible chromatin in mammalian preimplantation embryos
0 signed · 803 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/dvdy.20996openalex-snapshot
Nuclear receptor NR5A2 is required for proper primitive streak morphogenesis
inferredcites →https://doi.org/10.1006/dbio.1996.8466openalex-snapshot
Regulation of Transcriptional Activity during the First and Second Cell Cycles in the Preimplantation Mouse Embryo
inferredcites →https://doi.org/10.1016/j.cell.2007.02.005openalex-snapshot
Chromatin Modifications and Their Function
inferredcites →https://doi.org/10.1016/j.cell.2011.12.035openalex-snapshot
Base-Resolution Analyses of Sequence and Parent-of-Origin Dependent DNA Methylation in the Mouse Genome
inferredcites →https://doi.org/10.1016/j.cell.2013.04.022openalex-snapshot
Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.cell.2014.04.017openalex-snapshot
Programming and Inheritance of Parental DNA Methylomes in Mammals
inferredcites →https://doi.org/10.1016/j.cell.2014.11.018openalex-snapshot
Tissue-Resident Macrophage Enhancer Landscapes Are Shaped by the Local Microenvironment
inferredcites →https://doi.org/10.1016/j.devcel.2004.09.004openalex-snapshot
Retrotransposons Regulate Host Genes in Mouse Oocytes and Preimplantation Embryos
inferredcites →https://doi.org/10.1016/j.devcel.2012.10.024openalex-snapshot
A New Direction for Gene Looping
inferredcites →https://doi.org/10.1016/j.leukres.2012.04.010openalex-snapshot
ETV6 fusion genes in hematological malignancies: A review
inferredcites →https://doi.org/10.1016/j.molcel.2010.05.004openalex-snapshot
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
inferredcites →https://doi.org/10.1016/j.tig.2012.02.008openalex-snapshot
Enhancers as information integration hubs in development: lessons from genomics
inferredcites →https://doi.org/10.1016/j.ydbio.2014.12.004openalex-snapshot
Maternal-zygotic knockout reveals a critical role of Cdx2 in the morula to blastocyst transition
inferredcites →https://doi.org/10.1016/s1534-5807(03)00373-3openalex-snapshot
Dynamics of Global Gene Expression Changes during Mouse Preimplantation Development
inferredcites →https://doi.org/10.1038/35047554openalex-snapshot
Genomic imprinting: parental influence on the genome
inferredcites →https://doi.org/10.1038/msb.2010.31openalex-snapshot
A human B‐cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers
inferredcites →https://doi.org/10.1038/nature10413openalex-snapshot
Mouse genomic variation and its effect on phenotypes and gene regulation
inferredcites →https://doi.org/10.1038/nature11243openalex-snapshot
A map of the cis-regulatory sequences in the mouse genome
inferredcites →https://doi.org/10.1038/nature11244openalex-snapshot
Embryonic stem cell potency fluctuates with endogenous retrovirus activity
inferredcites →https://doi.org/10.1038/nature14590openalex-snapshot
Single-cell chromatin accessibility reveals principles of regulatory variation
inferredcites →https://doi.org/10.1038/nbt.1630openalex-snapshot
GREAT improves functional interpretation of cis-regulatory regions
inferredcites →https://doi.org/10.1038/nbt.3270openalex-snapshot
Transient acquisition of pluripotency during somatic cell transdifferentiation with iPSC reprogramming factors
inferredcites →https://doi.org/10.1038/ncb2965openalex-snapshot
The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification
inferredcites →https://doi.org/10.1038/ng.2649openalex-snapshot
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
inferredcites →https://doi.org/10.1038/nmeth.2688openalex-snapshot
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
inferredcites →https://doi.org/10.1038/nprot.2014.006openalex-snapshot
Full-length RNA-seq from single cells using Smart-seq2
inferredcites →https://doi.org/10.1038/nrg2564openalex-snapshot
Making a firm decision: multifaceted regulation of cell fate in the early mouse embryo
inferredcites →https://doi.org/10.1038/nrm3885openalex-snapshot
Chromatin dynamics in the regulation of cell fate allocation during early embryogenesis
inferredcites →https://doi.org/10.1038/nsmb.3066openalex-snapshot
Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly
inferredcites →https://doi.org/10.1038/nsmb1352openalex-snapshot
RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/humupd/8.4.323openalex-snapshot
The molecular foundations of the maternal to zygotic transition in the preimplantation embryo
inferredcites →https://doi.org/10.1093/nar/gku818openalex-snapshot
TELP, a sensitive and versatile library construction method for next-generation sequencing
inferredcites →https://doi.org/10.1101/gad.12.22.3579openalex-snapshot
GATA6 regulates HNF4 and is required for differentiation of visceral endoderm in the mouse embryo
inferredcites →https://doi.org/10.1101/gr.138776.112openalex-snapshot
CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters
inferredcites →https://doi.org/10.1126/science.1245316openalex-snapshot
Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells
inferredcites →https://doi.org/10.1126/science.1256271openalex-snapshot
Chromatin state dynamics during blood formation
inferredcites →https://doi.org/10.1126/science.aab1601openalex-snapshot
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
inferredcites →https://doi.org/10.1128/mcb.25.9.3492-3505.2005openalex-snapshot
Orphan Nuclear Receptor LRH-1 Is Required To Maintain Oct4 Expression at the Epiblast Stage of Embryonic Development
inferredcites →https://doi.org/10.1146/annurev.bi.57.070188.001111openalex-snapshot
NUCLEASE HYPERSENSITIVE SITES IN CHROMATIN
inferredcites →https://doi.org/10.1186/gb-2003-4-5-p3openalex-snapshot
DAVID: Database for Annotation, Visualization, and Integrated Discovery
inferredcites →https://doi.org/10.1186/gb-2005-6-4-r33openalex-snapshot
Promoter features related to tissue specificity as measured by Shannon entropy
inferredcites →https://doi.org/10.1186/s12977-015-0173-5openalex-snapshot
Retrotransposons shape species-specific embryonic stem cell gene expression
inferredcites →https://doi.org/10.1186/s13059-016-0904-5openalex-snapshot
Depletion of Abundant Sequences by Hybridization (DASH): using Cas9 to remove unwanted high-abundance species in sequencing libraries and molecular counting applications
inferredcites →https://doi.org/10.1242/dev.121.11.3877openalex-snapshot
Targeted mutagenesis of the transcription factor GATA-4 gene in mouse embryonic stem cells disrupts visceral endoderm differentiation in vitro
inferredcites →https://doi.org/10.1371/journal.pgen.1004618openalex-snapshot
HIPPO Pathway Members Restrict SOX2 to the Inner Cell Mass Where It Promotes ICM Fates in the Mouse Blastocyst
inferredcites →https://doi.org/10.1371/journal.pone.0021208openalex-snapshot
Deterministic and Stochastic Allele Specific Gene Expression in Single Mouse Blastomeres
inferredcites →https://doi.org/10.15252/embj.201490648openalex-snapshot
The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4052009openalex-extracted
Transcriptome Profiling of Histone Acetylation and Methylation Writers and Erasers Families Across Male Germ Cell Development and Pre-Cleavage Zygote
inferred← citeshttps://doi.org/10.1002/2211-5463.12900openalex-snapshot
Pig‐specific RNA editing during early embryo development revealed by genome‐wide comparisons
inferred← citeshttps://doi.org/10.1002/adma.202505208openalex-snapshot
MUTE‐Seq: An Ultrasensitive Method for Detecting Low‐Frequency Mutations in cfDNA With Engineered Advanced‐Fidelity FnCas9
inferred← citeshttps://doi.org/10.1002/advs.202205500openalex-snapshot
Selective Translation of Maternal mRNA by eIF4E1B Controls Oocyte to Embryo Transition
inferred← citeshttps://doi.org/10.1002/advs.202307505openalex-snapshot
SINE‐Associated LncRNA SAWPA Regulates Porcine Zygotic Genome Activation
inferred← citeshttps://doi.org/10.1002/advs.75143openalex-snapshot
The Landscape and Regulation of Histone Crotonylation in Mammalian Gametes and Early Embryos
inferred← citeshttps://doi.org/10.1002/bies.202200029openalex-snapshot
Genome architecture and totipotency: An intertwined relation during early embryonic development
inferred← citeshttps://doi.org/10.1002/cbin.11834openalex-snapshot
RNA‐seq and ATAC‐seq analyses of multilineage differentiating stress enduring cells: Comparison with dermal fibroblasts
inferred← citeshttps://doi.org/10.1002/cpmb.60openalex-snapshot
DMS-Seq for In Vivo Genome-wide Mapping of Protein-DNA Interactions and Nucleosome Centers
inferred← citeshttps://doi.org/10.1002/cpz1.947openalex-snapshot
Single Genomic Loci Labeling and Manipulation Using SIMBA System
inferred← citeshttps://doi.org/10.1002/ctm2.1760openalex-snapshot
Depletion‐assisted multiplexed cell‐free RNA sequencing reveals distinct human and microbial signatures in plasma versus extracellular vesicles
inferred← citeshttps://doi.org/10.1002/jcp.27534openalex-snapshot
HDAC6 inhibition induces the failure of mouse early embryonic development
inferred← citeshttps://doi.org/10.1002/mc.22818openalex-snapshot
Identification of chromatin‐accessible domains in non‐alcoholic steatohepatitis‐derived hepatocellular carcinoma
inferred← citeshttps://doi.org/10.1002/pmic.201800423openalex-snapshot
Human Endometrial Extracellular Vesicles Functionally Prepare Human Trophectoderm Model for Implantation: Understanding Bidirectional Maternal‐Embryo Communication
inferred← citeshttps://doi.org/10.1002/rmb2.12521openalex-snapshot
Current status of genome‐wide epigenetic profiling of mammalian preimplantation embryos
inferred← citeshttps://doi.org/10.1002/stem.3064openalex-snapshot
Epigenetic Regulation of Transition Among Different Pluripotent States: Concise Review
inferred← citeshttps://doi.org/10.1007/978-1-0716-0301-7_11openalex-snapshot
Gene Ontology Semantic Similarity Analysis Using GOSemSim
inferred← citeshttps://doi.org/10.1007/978-1-4939-9170-9_21openalex-snapshot
CRISPR-Based Lentiviral Knockout Libraries for Functional Genomic Screening and Identification of Phenotype-Related Genes
inferred← citeshttps://doi.org/10.1007/978-1-4939-9802-9_3openalex-snapshot
Chromatin Epigenomics in Muscle Development and Disease
inferred← citeshttps://doi.org/10.1007/978-981-13-0502-3_9openalex-snapshot
Single Cell Genetics and Epigenetics in Early Embryo: From Oocyte to Blastocyst
inferred← citeshttps://doi.org/10.1007/s00018-016-2447-zopenalex-snapshot
Epigenetic modifications and reprogramming in paternal pronucleus: sperm, preimplantation embryo, and beyond
inferred← citeshttps://doi.org/10.1007/s00018-017-2703-xopenalex-snapshot
Epigenetic differences between naïve and primed pluripotent stem cells
inferred← citeshttps://doi.org/10.1007/s00018-018-2750-yopenalex-snapshot
Post-translational regulation of the maternal-to-zygotic transition
inferred← citeshttps://doi.org/10.1007/s00018-019-03245-8openalex-snapshot
Epigenetic control of embryo–uterine crosstalk at peri-implantation
inferred← citeshttps://doi.org/10.1007/s00018-019-03360-6openalex-snapshot
Zygotic genome activation in the chicken: a comparative review
inferred← citeshttps://doi.org/10.1007/s00294-021-01177-0openalex-snapshot
Wake-up alarm: virtual time-lapse gene expression landscape illuminates mechanisms underlying dormancy breaking of germinating spores
inferred← citeshttps://doi.org/10.1007/s00412-017-0656-3openalex-snapshot
Telomere chromatin establishment and its maintenance during mammalian development
inferred← citeshttps://doi.org/10.1007/s11427-016-0285-3openalex-snapshot
The genome-wide molecular regulation of mouse gastrulation embryo
inferred← citeshttps://doi.org/10.1007/s11427-018-9427-4openalex-snapshot
Advances in research into gamete and embryo-fetal origins of adult diseases
inferred← citeshttps://doi.org/10.1007/s11427-019-1572-7openalex-snapshot
Recent advances in mammalian reproductive biology
inferred← citeshttps://doi.org/10.1007/s11427-022-2151-0openalex-snapshot
Short telomeres impede germ cell specification by upregulating MAPK and TGFβ signaling
inferred← citeshttps://doi.org/10.1007/s11427-023-2502-5openalex-snapshot
Pivotal role for long noncoding RNAs in zygotic genome activation in mice
inferred← citeshttps://doi.org/10.1007/s11427-025-3039-0openalex-snapshot
Chromatin accessibility landscape during mammalian preimplantation development
inferred← citeshttps://doi.org/10.1007/s11892-019-1129-2openalex-snapshot
Epigenetic Risk Profile of Diabetic Kidney Disease in High-Risk Populations
inferred← citeshttps://doi.org/10.1007/s13237-017-0223-6openalex-snapshot
Dosage compensation and its roles in evolution of sex chromosomes and phenotypic dimorphism: lessons from Drosophila, C.elegans and mammals
inferred← citeshttps://doi.org/10.1007/s13238-020-00728-4openalex-snapshot
SIRT7 antagonizes human stem cell aging as a heterochromatin stabilizer
inferred← citeshttps://doi.org/10.1007/s13238-020-00757-zopenalex-snapshot
Insights into epigenetic patterns in mammalian early embryos
inferred← citeshttps://doi.org/10.1007/s13258-021-01213-wopenalex-snapshot
Epigenetic reorganization during early embryonic lineage specification
inferred← citeshttps://doi.org/10.1016/b978-0-12-813955-4.00012-xopenalex-snapshot
CRISPR–Cas immune systems and genome engineering
inferred← citeshttps://doi.org/10.1016/b978-0-12-814879-2.00006-6openalex-snapshot
Epigenetics of Early Mammalian Development: A Pathway to Regenerative Medicine
inferred← citeshttps://doi.org/10.1016/b978-0-12-816363-4.00010-9openalex-snapshot
Long noncoding RNA and epigenetic inheritance
inferred← citeshttps://doi.org/10.1016/b978-0-12-819414-0.00018-5openalex-snapshot
ATAC-seq method applied to embryonic germ cells and neural stem cells from mouse: Practical tips and modifications
inferred← citeshttps://doi.org/10.1016/b978-0-12-819414-0.00032-xopenalex-snapshot
Advances in epigenetic techniques to study development and diseases
inferred← citeshttps://doi.org/10.1016/b978-0-443-19001-8.00023-4openalex-snapshot
Stem cells and stem like cancer cells chromatin dynamics
inferred← citeshttps://doi.org/10.1016/b978-0-443-21863-7.00014-7openalex-snapshot
Stem cell epigenetics in development and disease
inferred← citeshttps://doi.org/10.1016/b978-0-443-26759-8.00005-9openalex-snapshot
ATAC-seq method applied to embryonic germ cells and neural stem cells from mouse: Practical tips and modifications
inferred← citeshttps://doi.org/10.1016/b978-0-443-26759-8.00019-9openalex-snapshot
Advances in epigenetic techniques to study development and diseases
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2017.10.011openalex-snapshot
From Germline to Soma: Epigenetic Dynamics in the Mouse Preimplantation Embryo
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2019.11.012openalex-snapshot
Guts and gastrulation: Emergence and convergence of endoderm in the mouse embryo
inferred← citeshttps://doi.org/10.1016/bs.mcb.2018.11.002openalex-snapshot
Genome-wide analysis of chromatin accessibility using ATAC-seq
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.741531openalex-snapshot
Profiling of chromatin accessibility and regulatory elements toward understanding the mechanisms underlying growth regulation in the Pacific oyster (Crassostrea gigas)
inferred← citeshttps://doi.org/10.1016/j.bbadis.2020.165988openalex-snapshot
A long non-coding RNA specifically expressed in early embryos programs the metabolic balance in adult mice
inferred← citeshttps://doi.org/10.1016/j.bbadis.2021.166261openalex-snapshot
Enhancing Acsl4 in absence of mTORC2/Rictor drove β-cell dedifferentiation via inhibiting FoxO1 and promoting ROS production
inferred← citeshttps://doi.org/10.1016/j.bbrc.2017.08.065openalex-snapshot
Quantitative analysis of chromatin accessibility in mouse embryonic fibroblasts
inferred← citeshttps://doi.org/10.1016/j.bpj.2026.02.015openalex-snapshot
Kinetic model of E-P condensates dynamics reveals transcriptional speed, noise, and energy trade-offs
inferred← citeshttps://doi.org/10.1016/j.ceb.2017.06.001openalex-snapshot
Structural components of nuclear integrity with gene regulatory potential
inferred← citeshttps://doi.org/10.1016/j.ceb.2021.12.004openalex-snapshot
Emerging mechanisms and dynamics of three-dimensional genome organisation at zygotic genome activation
inferred← citeshttps://doi.org/10.1016/j.cell.2017.06.029openalex-snapshot
3D Chromatin Structures of Mature Gametes and Structural Reprogramming during Mammalian Embryogenesis
inferred← citeshttps://doi.org/10.1016/j.cell.2018.02.028openalex-snapshot
Chromatin Accessibility Landscape in Human Early Embryos and Its Association with Evolution
inferred← citeshttps://doi.org/10.1016/j.cell.2018.05.043openalex-snapshot
A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity
inferred← citeshttps://doi.org/10.1016/j.cell.2018.09.040openalex-snapshot
Nervous System Regionalization Entails Axial Allocation before Neural Differentiation
inferred← citeshttps://doi.org/10.1016/j.cell.2018.11.039openalex-snapshot
Asymmetric Expression of LincGET Biases Cell Fate in Two-Cell Mouse Embryos
inferred← citeshttps://doi.org/10.1016/j.cell.2020.02.020openalex-snapshot
Initiation of Parental Genome Reprogramming in Fertilized Oocyte by Splicing Kinase SRPK1-Catalyzed Protamine Phosphorylation
inferred← citeshttps://doi.org/10.1016/j.cell.2021.04.020openalex-snapshot
Mouse totipotent stem cells captured and maintained through spliceosomal repression
inferred← citeshttps://doi.org/10.1016/j.cell.2024.03.023openalex-snapshot
Dual-role transcription factors stabilize intermediate expression levels
inferred← citeshttps://doi.org/10.1016/j.cell.2025.03.044openalex-snapshot
The establishment of nuclear organization in mouse embryos is orchestrated by multiple epigenetic pathways
inferred← citeshttps://doi.org/10.1016/j.cell.2025.09.003openalex-snapshot
Single-cell nascent transcription reveals sparse genome usage and plasticity
inferred← citeshttps://doi.org/10.1016/j.celrep.2016.08.087openalex-snapshot
MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs
inferred← citeshttps://doi.org/10.1016/j.celrep.2017.06.070openalex-snapshot
Robust Identification of Developmentally Active Endothelial Enhancers in Zebrafish Using FANS-Assisted ATAC-Seq
inferred← citeshttps://doi.org/10.1016/j.celrep.2017.09.011openalex-snapshot
Rapid Chromatin Switch in the Direct Reprogramming of Fibroblasts to Neurons
inferred← citeshttps://doi.org/10.1016/j.celrep.2017.11.111openalex-snapshot
Protein Expression Landscape of Mouse Embryos during Pre-implantation Development
inferred← citeshttps://doi.org/10.1016/j.celrep.2018.04.036openalex-snapshot
Reprogramming of Chromatin Accessibility in Somatic Cell Nuclear Transfer Is DNA Replication Independent
inferred← citeshttps://doi.org/10.1016/j.celrep.2018.06.030openalex-snapshot
Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes
inferred← citeshttps://doi.org/10.1016/j.celrep.2019.08.089openalex-snapshot
Single-Cell Chromatin Analysis of Mammary Gland Development Reveals Cell-State Transcriptional Regulators and Lineage Relationships
inferred← citeshttps://doi.org/10.1016/j.celrep.2019.10.055openalex-snapshot
Nuclear Exosome Targeting Complex Core Factor Zcchc8 Regulates the Degradation of LINE1 RNA in Early Embryos and Embryonic Stem Cells
inferred← citeshttps://doi.org/10.1016/j.celrep.2019.10.074openalex-snapshot
MLL1 Inhibition and Vitamin D Signaling Cooperate to Facilitate the Expanded Pluripotency State
inferred← citeshttps://doi.org/10.1016/j.celrep.2019.12.021openalex-snapshot
DEAD-Box Helicase 18 Counteracts PRC2 to Safeguard Ribosomal DNA in Pluripotency Regulation
inferred← citeshttps://doi.org/10.1016/j.celrep.2020.02.048openalex-snapshot
Genomic Repeats Categorize Genes with Distinct Functions for Orchestrated Regulation
inferred← citeshttps://doi.org/10.1016/j.celrep.2020.107870openalex-snapshot
Genome-wide R-loop Landscapes during Cell Differentiation and Reprogramming
inferred← citeshttps://doi.org/10.1016/j.celrep.2020.108069openalex-snapshot
Unsupervised Inference of Developmental Directions for Single Cells Using VECTOR
inferred← citeshttps://doi.org/10.1016/j.celrep.2022.111865openalex-snapshot
Distinct patterns of RNA polymerase II and transcriptional elongation characterize mammalian genome activation
inferred← citeshttps://doi.org/10.1016/j.celrep.2023.112023openalex-snapshot
A program of successive gene expression in mouse one-cell embryos
inferred← citeshttps://doi.org/10.1016/j.celrep.2023.112194openalex-snapshot
Single-cell multiome sequencing clarifies enteric glial diversity and identifies an intraganglionic population poised for neurogenesis
inferred← citeshttps://doi.org/10.1016/j.celrep.2024.113775openalex-snapshot
Systematic evaluation of retroviral LTRs as cis-regulatory elements in mouse embryos
inferred← citeshttps://doi.org/10.1016/j.celrep.2024.113840openalex-snapshot
Nr5a2 ensures inner cell mass formation in mouse blastocyst
inferred← citeshttps://doi.org/10.1016/j.celrep.2024.114077openalex-snapshot
The dynamic landscape of enhancer-derived RNA during mouse early embryo development
inferred← citeshttps://doi.org/10.1016/j.celrep.2024.114118openalex-snapshot
Detection of newly synthesized RNA reveals transcriptional reprogramming during ZGA and a role of Obox3 in totipotency acquisition
inferred← citeshttps://doi.org/10.1016/j.celrep.2024.114136openalex-snapshot
Chromatin landscape instructs precise transcription factor regulome during embryonic lineage specification
inferred← citeshttps://doi.org/10.1016/j.celrep.2024.115148openalex-snapshot
Acetylation at lysine 27 on maternal H3.3 regulates minor zygotic genome activation
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.115520openalex-snapshot
Single-cell 5-hydroxymethylcytosine landscapes of mouse early embryos at single-base resolution
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.115633openalex-snapshot
Transcriptional landscape and chromatin accessibility reveal key regulators for liver regenerative initiation and organoid formation
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.115790openalex-snapshot
Dissecting pre- to post-implantation transition of DNA methylome-transcriptome dynamics in early mammalian development
inferred← citeshttps://doi.org/10.1016/j.cels.2023.07.008openalex-snapshot
A bipartite function of ESRRB can integrate signaling over time to balance self-renewal and differentiation
inferred← citeshttps://doi.org/10.1016/j.cmet.2018.01.008openalex-snapshot
Metabolism in Pluripotent Stem Cells and Early Mammalian Development
inferred← citeshttps://doi.org/10.1016/j.cmet.2022.04.011openalex-snapshot
Comparative transcriptomics reveals circadian and pluripotency networks as two pillars of longevity regulation
inferred← citeshttps://doi.org/10.1016/j.cr.2019.10.001openalex-snapshot
The first cell fate decision in pre-implantation mouse embryos
inferred← citeshttps://doi.org/10.1016/j.csbj.2025.11.026openalex-snapshot
EAP: A versatile cloud-based platform for efficient quantitative analysis of large-scale ChIP/ATAC-seq datasets
inferred← citeshttps://doi.org/10.1016/j.devcel.2016.08.004openalex-snapshot
Chromatin Control of Developmental Dynamics and Plasticity
inferred← citeshttps://doi.org/10.1016/j.devcel.2017.07.026openalex-snapshot
Zygotic Genome Activation in Vertebrates
inferred← citeshttps://doi.org/10.1016/j.devcel.2019.01.003openalex-snapshot
Open Chromatin, Epigenetic Plasticity, and Nuclear Organization in Pluripotency
inferred← citeshttps://doi.org/10.1016/j.devcel.2019.10.024openalex-snapshot
Gcn5-Mediated Histone Acetylation Governs Nucleosome Dynamics in Spermiogenesis
inferred← citeshttps://doi.org/10.1016/j.devcel.2020.04.018openalex-snapshot
Developmentally Programmed Tankyrase Activity Upregulates β-Catenin and Licenses Progression of Embryonic Genome Activation
inferred← citeshttps://doi.org/10.1016/j.devcel.2022.01.006openalex-snapshot
Epigenetic basis of oncogenic-Kras-mediated epithelial-cellular proliferation and plasticity
inferred← citeshttps://doi.org/10.1016/j.devcel.2022.07.011openalex-snapshot
Rap1 controls epiblast morphogenesis in sync with the pluripotency states transition
inferred← citeshttps://doi.org/10.1016/j.devcel.2023.09.013openalex-snapshot
In vitro generation of mouse morula-like cells
inferred← citeshttps://doi.org/10.1016/j.devcel.2023.11.005openalex-snapshot
Chromatin state transitions in the Drosophila intestinal lineage identify principles of cell-type specification
inferred← citeshttps://doi.org/10.1016/j.devcel.2024.03.015openalex-snapshot
Defining a TFAP2C-centered transcription factor network during murine peri-implantation
inferred← citeshttps://doi.org/10.1016/j.devcel.2024.10.001openalex-snapshot
PI3K/AKT signaling controls ICM maturation and proper epiblast and primitive endoderm specification in mice
inferred← citeshttps://doi.org/10.1016/j.devcel.2024.10.018openalex-snapshot
Lysosomal catabolic activity promotes the exit of murine totipotent 2-cell state by silencing early-embryonic retrotransposons
inferred← citeshttps://doi.org/10.1016/j.devcel.2025.03.016openalex-snapshot
RIF1 controls replication timing in early mouse embryos independently of lamina-associated nuclear organization
inferred← citeshttps://doi.org/10.1016/j.fmre.2026.03.007openalex-snapshot
BRG1 deficiency impairs totipotency and pluripotency factor binding by disrupting nucleosome organization during embryogenesis
inferred← citeshttps://doi.org/10.1016/j.gde.2016.12.001openalex-snapshot
The timing of zygotic genome activation
inferred← citeshttps://doi.org/10.1016/j.gde.2017.06.004openalex-snapshot
Emerging roles of the histone chaperone CAF-1 in cellular plasticity
inferred← citeshttps://doi.org/10.1016/j.gde.2017.07.005openalex-snapshot
Transcriptional and epigenetic control in mouse pluripotency: lessons from in vivo and in vitro studies
inferred← citeshttps://doi.org/10.1016/j.gde.2017.07.012openalex-snapshot
Regulation of ERVs in pluripotent stem cells and reprogramming
inferred← citeshttps://doi.org/10.1016/j.gde.2019.04.011openalex-snapshot
Genome activation and architecture in the early mammalian embryo
inferred← citeshttps://doi.org/10.1016/j.gde.2020.05.015openalex-snapshot
Epigenetic regulation of mouse preimplantation embryo development
inferred← citeshttps://doi.org/10.1016/j.gde.2023.102083openalex-snapshot
Regulation of mammalian totipotency: a molecular perspective from in vivo and in vitro studies
inferred← citeshttps://doi.org/10.1016/j.gendis.2025.101555openalex-snapshot
Expression of LINE-1 elements is required for preimplantation development and totipotency
inferred← citeshttps://doi.org/10.1016/j.genrep.2022.101533openalex-snapshot
In-silico analysis of the regulatory region of effector protein genes in Verticillium dahliae
inferred← citeshttps://doi.org/10.1016/j.genrep.2025.102420openalex-snapshot
Sperm non-coding RNAs and pregnancy outcomes: A literature review
inferred← citeshttps://doi.org/10.1016/j.gpb.2022.02.006openalex-snapshot
Computational Tools and Resources for CRISPR/Cas Genome Editing
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2021.11.181openalex-snapshot
CHAF1b, chromatin assembly factor-1 subunit b, is essential for mouse preimplantation embryos
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2024.129715openalex-snapshot
DNA methylation dynamics during yak adipocyte differentiation
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.149067openalex-snapshot
(A)symmetry in the allele-specific chromosomal structural dynamics during embryogenesis
inferred← citeshttps://doi.org/10.1016/j.ijms.2018.06.008openalex-snapshot
Mass spectrometry imaging of intact cholesterol in a mouse esophagus tissue section and mouse zygotes using VUV laser desorption/ionization method
inferred← citeshttps://doi.org/10.1016/j.intimp.2021.108072openalex-snapshot
Irf1- and Egr1-activated transcription plays a key role in macrophage polarization: A multiomics sequencing study with partial validation
inferred← citeshttps://doi.org/10.1016/j.intimp.2023.109803openalex-snapshot
Integrated analysis of ATAC-seq and RNA-seq reveals the transcriptional regulation network in SLE
inferred← citeshttps://doi.org/10.1016/j.isci.2018.12.032openalex-snapshot
mtDNA Chromatin-like Organization Is Gradually Established during Mammalian Embryogenesis
inferred← citeshttps://doi.org/10.1016/j.isci.2019.06.013openalex-snapshot
The Spatiotemporal Control of Zygotic Genome Activation
inferred← citeshttps://doi.org/10.1016/j.isci.2021.102773openalex-snapshot
Intergenerational effect of short-term spaceflight in mice
inferred← citeshttps://doi.org/10.1016/j.isci.2022.104978openalex-snapshot
Confined migration induces heterochromatin formation and alters chromatin accessibility
inferred← citeshttps://doi.org/10.1016/j.isci.2022.105490openalex-snapshot
Activation of HIV-1 proviruses increases downstream chromatin accessibility
inferred← citeshttps://doi.org/10.1016/j.jgg.2018.04.001openalex-snapshot
The start of a human life program
inferred← citeshttps://doi.org/10.1016/j.jid.2020.12.031openalex-snapshot
Assay for Transposase-Accessible Chromatin Using Sequencing Analysis Reveals a Widespread Increase in Chromatin Accessibility in Psoriasis
inferred← citeshttps://doi.org/10.1016/j.jmb.2023.168019openalex-snapshot
The Force is Strong with This Epigenome: Chromatin Structure and Mechanobiology
inferred← citeshttps://doi.org/10.1016/j.jpha.2023.05.003openalex-snapshot
Ultrasensitive proteomics depicted an in-depth landscape for the very early stage of mouse maternal-to-zygotic transition
inferred← citeshttps://doi.org/10.1016/j.molcel.2019.04.014openalex-snapshot
Maintenance of CTCF- and Transcription Factor-Mediated Interactions from the Gametes to the Early Mouse Embryo
inferred← citeshttps://doi.org/10.1016/j.molcel.2019.08.025openalex-snapshot
Human Germline Cell Development: from the Perspective of Single-Cell Sequencing
inferred← citeshttps://doi.org/10.1016/j.molcel.2021.11.011openalex-snapshot
SUMOylation of linker histone H1 drives chromatin condensation and restriction of embryonic cell fate identity
inferred← citeshttps://doi.org/10.1016/j.molcel.2022.01.024openalex-snapshot
The landscape of pioneer factor activity reveals the mechanisms of chromatin reprogramming and genome activation
inferred← citeshttps://doi.org/10.1016/j.molcel.2022.01.027openalex-snapshot
CpG island reconfiguration for the establishment and synchronization of polycomb functions upon exit from naive pluripotency
inferred← citeshttps://doi.org/10.1016/j.molcel.2023.02.028openalex-snapshot
RNA Pol II preferentially regulates ribosomal protein expression by trapping disassociated subunits
inferred← citeshttps://doi.org/10.1016/j.molcel.2024.02.013openalex-snapshot
Imprinted X chromosome inactivation at the gamete-to-embryo transition
inferred← citeshttps://doi.org/10.1016/j.molp.2024.01.010openalex-snapshot
Systematic identification of wheat spike developmental regulators by integrated multi-omics, transcriptional network, GWAS, and genetic analyses
inferred← citeshttps://doi.org/10.1016/j.nantod.2022.101735openalex-snapshot
Systems toxicology to advance human and environmental hazard assessment: A roadmap for advanced materials
inferred← citeshttps://doi.org/10.1016/j.omtn.2021.07.006openalex-snapshot
The roles of DNA methylation and hydroxymethylation at short interspersed nuclear elements in the hypothalamic arcuate nucleus during puberty
inferred← citeshttps://doi.org/10.1016/j.pbi.2020.01.003openalex-snapshot
Considerations in the analysis of plant chromatin accessibility data
inferred← citeshttps://doi.org/10.1016/j.plrev.2017.01.001openalex-snapshot
Epigenetic information in gametes: Gaming from before fertilization
inferred← citeshttps://doi.org/10.1016/j.rvsc.2025.105565openalex-snapshot
Comparative analysis of chromatin accessibility in porcine oocytes from follicles of different sizes
inferred← citeshttps://doi.org/10.1016/j.scib.2025.04.045openalex-snapshot
Human oocyte quality and reproductive health
inferred← citeshttps://doi.org/10.1016/j.scib.2025.10.025openalex-snapshot
Hmgn3 is critical for inducing totipotency in mouse embryonic stem cells
inferred← citeshttps://doi.org/10.1016/j.scr.2018.03.014openalex-snapshot
Open chromatin dynamics reveals stage-specific transcriptional networks in hiPSC-based neurodevelopmental model
inferred← citeshttps://doi.org/10.1016/j.scr.2022.102857openalex-snapshot
A critical review on induced totipotent stem cells: Types and methods
inferred← citeshttps://doi.org/10.1016/j.semcancer.2019.01.005openalex-snapshot
A regulatory circuitry locking pluripotent stemness to embryonic stem cell: Interaction between threonine catabolism and histone methylation
inferred← citeshttps://doi.org/10.1016/j.semcdb.2017.12.006openalex-snapshot
Mammalian zygotic genome activation
inferred← citeshttps://doi.org/10.1016/j.semcdb.2022.02.010openalex-snapshot
The non-coding genome in early human development – Recent advancements
inferred← citeshttps://doi.org/10.1016/j.stem.2016.12.004openalex-snapshot
New Insights into Early Human Development: Lessons for Stem Cell Derivation and Differentiation
inferred← citeshttps://doi.org/10.1016/j.stem.2017.02.013openalex-snapshot
Single-Cell 5-Formylcytosine Landscapes of Mammalian Early Embryos and ESCs at Single-Base Resolution
inferred← citeshttps://doi.org/10.1016/j.stem.2017.08.012openalex-snapshot
Nup153 Interacts with Sox2 to Enable Bimodal Gene Regulation and Maintenance of Neural Progenitor Cells
inferred← citeshttps://doi.org/10.1016/j.stem.2017.12.011openalex-snapshot
Capturing Totipotent Stem Cells
inferred← citeshttps://doi.org/10.1016/j.stem.2018.06.018openalex-snapshot
Somatic Cell Nuclear Transfer Reprogramming: Mechanisms and Applications
inferred← citeshttps://doi.org/10.1016/j.stem.2020.01.004openalex-snapshot
DUX-miR-344-ZMYM2-Mediated Activation of MERVL LTRs Induces a Totipotent 2C-like State
inferred← citeshttps://doi.org/10.1016/j.stem.2022.01.010openalex-snapshot
Chemical-induced chromatin remodeling reprograms mouse ESCs to totipotent-like stem cells
inferred← citeshttps://doi.org/10.1016/j.stem.2022.05.004openalex-snapshot
A TRIM66/DAX1/Dux axis suppresses the totipotent 2-cell-like state in murine embryonic stem cells
inferred← citeshttps://doi.org/10.1016/j.stem.2022.06.006openalex-snapshot
Dynamic reprogramming of H3K9me3 at hominoid-specific retrotransposons during human preimplantation development
inferred← citeshttps://doi.org/10.1016/j.stem.2024.03.015openalex-snapshot
Nuclear RNA homeostasis promotes systems-level coordination of cell fate and senescence
inferred← citeshttps://doi.org/10.1016/j.stem.2024.12.006openalex-snapshot
Mouse totipotent blastomere-like cells model embryogenesis from zygotic genome activation to post implantation
inferred← citeshttps://doi.org/10.1016/j.stem.2025.10.003openalex-snapshot
N6-methyladenosine on L1PA governs the trans-silencing of LTRs and restrains totipotency in naive human embryonic stem cells
inferred← citeshttps://doi.org/10.1016/j.stem.2026.01.015openalex-snapshot
Minimizing far-extending chromatin perturbation in genome editing preserves stem cell identity
inferred← citeshttps://doi.org/10.1016/j.stemcr.2017.12.023openalex-snapshot
Argonaute 2 Is Required for Extra-embryonic Endoderm Differentiation of Mouse Embryonic Stem Cells
inferred← citeshttps://doi.org/10.1016/j.stemcr.2019.07.011openalex-snapshot
Induced 2C Expression and Implantation-Competent Blastocyst-like Cysts from Primed Pluripotent Stem Cells
inferred← citeshttps://doi.org/10.1016/j.stemcr.2020.09.005openalex-snapshot
Rebooting the Epigenomes during Mammalian Early Embryogenesis
inferred← citeshttps://doi.org/10.1016/j.stemcr.2021.10.002openalex-snapshot
p53 inactivation unmasks histone methylation-independent WDR5 functions that drive self-renewal and differentiation of pluripotent stem cells
inferred← citeshttps://doi.org/10.1016/j.stemcr.2022.05.020openalex-snapshot
Aberrant nucleosome organization in mouse SCNT embryos revealed by ULI-MNase-seq
inferred← citeshttps://doi.org/10.1016/j.stemcr.2022.12.007openalex-snapshot
Ribosomal proteins regulate 2-cell-stage transcriptome in mouse embryonic stem cells
inferred← citeshttps://doi.org/10.1016/j.stemcr.2025.102605openalex-snapshot
Toti: An integrated multi-omics database to decipher the epigenetic regulation of gene expression in totipotent stem cells
inferred← citeshttps://doi.org/10.1016/j.stemcr.2025.102750openalex-snapshot
Chaperonin proteins CCT5 and CCT7 epigenetically restrict the transition from pluripotency to totipotency in embryonic stem cells
inferred← citeshttps://doi.org/10.1016/j.stemcr.2026.102824openalex-snapshot
Shugoshin 2A stabilizes heterochromatin complexes to suppress the 2-cell-like state in embryonic stem cells
inferred← citeshttps://doi.org/10.1016/j.tcb.2017.10.008openalex-snapshot
Epigenome in Early Mammalian Development: Inheritance, Reprogramming and Establishment
inferred← citeshttps://doi.org/10.1016/j.tig.2018.06.006openalex-snapshot
Nimble and Ready to Mingle: Transposon Outbursts of Early Development
inferred← citeshttps://doi.org/10.1016/j.tig.2018.09.002openalex-snapshot
The Birth of the 3D Genome during Early Embryonic Development
inferred← citeshttps://doi.org/10.1016/j.xgen.2023.100295openalex-snapshot
Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes
inferred← citeshttps://doi.org/10.1016/j.xgen.2025.100856openalex-snapshot
Super RNA Pol II domains enhance minor ZGA through 3D interaction to ensure the integrity of major transcriptional waves in late-ZGA mammals
inferred← citeshttps://doi.org/10.1016/j.xpro.2023.102703openalex-snapshot
Progenitor cell isolation from mouse epididymal adipose tissue and sequencing library construction
inferred← citeshttps://doi.org/10.1016/j.ydbio.2019.01.003openalex-snapshot
Evolution of embryonic cis-regulatory landscapes between divergent Phallusia and Ciona ascidians
inferred← citeshttps://doi.org/10.1016/j.ydbio.2025.09.005openalex-snapshot
Reorganization of H3K9me2-modified chromatin regions during mouse embryonic development
inferred← citeshttps://doi.org/10.1016/j.yjmcc.2023.01.007openalex-snapshot
Metabolism-based cardiomyocytes production for regenerative therapy
inferred← citeshttps://doi.org/10.1016/j.ymeth.2024.04.014openalex-snapshot
Prediction of cell-type-specific cohesin-mediated chromatin loops based on chromatin state
inferred← citeshttps://doi.org/10.1017/9781108242080.003openalex-snapshot
Epigenetics: The Gene Environment Interface
inferred← citeshttps://doi.org/10.1017/9781108242080.008openalex-snapshot
The Epigenetic Landscape in the Evolutionary Ascent of the Matriline: Concluding Overview
inferred← citeshttps://doi.org/10.1017/s0967199423000631openalex-snapshot
The identification and classification of candidate genes during the zygotic genome activation in the mammals
inferred← citeshttps://doi.org/10.1021/acs.biochem.8b00741openalex-snapshot
Efficient and Orthogonal Transcription Regulation by Chemically Inducible Artificial Transcription Factors
inferred← citeshttps://doi.org/10.1038/cdd.2017.122openalex-snapshot
An update on using CRISPR/Cas9 in the one-cell stage mouse embryo for generating complex mutant alleles
inferred← citeshttps://doi.org/10.1038/cr.2017.82openalex-snapshot
Single-cell multi-omics sequencing of mouse early embryos and embryonic stem cells
inferred← citeshttps://doi.org/10.1038/nature19468openalex-snapshot
Panoramic views of the early epigenome
inferred← citeshttps://doi.org/10.1038/nature23262openalex-snapshot
Maternal H3K27me3 controls DNA methylation-independent imprinting
inferred← citeshttps://doi.org/10.1038/nature23263openalex-snapshot
Allelic reprogramming of 3D chromatin architecture during early mammalian development
showing the first 200 of 753 · page through all 753
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.