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The Apostasia genome and the evolution of orchids
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/bf00984105openalex-snapshot
The structure and function of orchid pollinaria
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Transcriptome sequencing to produce SNP-based genetic maps of onion
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Aerial roots of epiphytic orchids: the velamen radicum and its role in water and nutrient uptake
inferredcites →https://doi.org/10.1007/s00606-004-0133-3openalex-snapshot
A phylogenetic analysis of Apostasioideae (Orchidaceae) based on ITS, trnL-F and matK sequences
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Genomic mapping by fingerprinting random clones: A mathematical analysis
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Genome-wide analysis of the MADS-box gene family in Populus trichocarpa
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Dating the origin of the Orchidaceae from a fossil orchid with its pollinator
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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
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Genome sequencing and analysis of the model grass Brachypodium distachyon
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The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
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The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
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De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)
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Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
inferredcites →https://doi.org/10.1038/ncomms4311openalex-snapshot
The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle
inferredcites →https://doi.org/10.1038/ng.3149openalex-snapshot
The genome sequence of the orchid Phalaenopsis equestris
inferredcites →https://doi.org/10.1038/ng.3435openalex-snapshot
The pineapple genome and the evolution of CAM photosynthesis
inferredcites →https://doi.org/10.1038/nmeth.1226openalex-snapshot
Mapping and quantifying mammalian transcriptomes by RNA-Seq
inferredcites →https://doi.org/10.1038/nmeth.3865openalex-snapshot
A hybrid approach for de novo human genome sequence assembly and phasing
inferredcites →https://doi.org/10.1038/nprot.2012.016openalex-snapshot
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1038/nrg.2017.26openalex-snapshot
The evolutionary significance of polyploidy
inferredcites →https://doi.org/10.1038/srep19029openalex-snapshot
The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution
inferredcites →https://doi.org/10.1073/pnas.0909766107openalex-snapshot
Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana
inferredcites →https://doi.org/10.1073/pnas.1001225107openalex-snapshot
An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants
inferredcites →https://doi.org/10.1073/pnas.1205818109openalex-snapshot
Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales
inferredcites →https://doi.org/10.1086/320781openalex-snapshot
Floral Structure and Development of Apostasia and Neuwiedia (Apostasioideae) and their Relationships to Other Orchidaceae
inferredcites →https://doi.org/10.1093/aob/mcn258openalex-snapshot
Why are orchid flowers so diverse? Reduction of evolutionary constraints by paralogues of class B floral homeotic genes
inferredcites →https://doi.org/10.1093/aob/mcp003openalex-snapshot
Genome size diversity in orchids: consequences and evolution
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MRBAYES: Bayesian inference of phylogenetic trees
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InterProScan – an integration platform for the signature-recognition methods in InterPro
inferredcites →https://doi.org/10.1093/bioinformatics/bth315openalex-snapshot
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
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Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW
inferredcites →https://doi.org/10.1093/bioinformatics/btl097openalex-snapshot
CAFE: a computational tool for the study of gene family evolution
inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btp157openalex-snapshot
Infernal 1.0: inference of RNA alignments
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
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A greedy, graph-based algorithm for the alignment of multiple homologous gene lists
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A novel hybrid gene prediction method employing protein multiple sequence alignments
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msr121openalex-snapshot
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
inferredcites →https://doi.org/10.1093/molbev/msr200openalex-snapshot
How MIKC* MADS-Box Genes Originated and Evidence for Their Conserved Function Throughout the Evolution of Vascular Plant Gametophytes
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/molbev/mss214openalex-snapshot
Inference of Genome Duplications from Age Distributions Revisited
inferredcites →https://doi.org/10.1093/nar/25.1.31openalex-snapshot
The SWISS-PROT protein sequence data bank and its supplement TrEMBL
inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
inferredcites →https://doi.org/10.1093/nar/26.1.38openalex-snapshot
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998
inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/28.1.45openalex-snapshot
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
inferredcites →https://doi.org/10.1093/nar/30.7.1575openalex-snapshot
An efficient algorithm for large-scale detection of protein families
inferredcites →https://doi.org/10.1093/nar/gkg095openalex-snapshot
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkl315openalex-snapshot
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
inferredcites →https://doi.org/10.1093/nar/gkp931openalex-snapshot
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
inferredcites →https://doi.org/10.1093/nar/gkr955openalex-snapshot
i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets
inferredcites →https://doi.org/10.1093/nar/gku949openalex-snapshot
SMART: recent updates, new developments and status in 2015
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040153openalex-snapshot
A codon-based model of nucleotide substitution for protein-coding DNA sequences.
inferredcites →https://doi.org/10.1093/pcp/pch095openalex-snapshot
Four DEF-Like MADS Box Genes Displayed Distinct Floral Morphogenetic Roles in Phalaenopsis Orchid
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1093/sysbio/syr087openalex-snapshot
Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation
inferredcites →https://doi.org/10.1098/rspb.2015.1553openalex-snapshot
Orchid phylogenomics and multiple drivers of their extraordinary diversification
inferredcites →https://doi.org/10.1098/rstb.2004.1529openalex-snapshot
Epiphytism and pollinator specialization: drivers for orchid diversity?
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1101/gr.168997.113openalex-snapshot
Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary
inferredcites →https://doi.org/10.1101/gr.178319.114openalex-snapshot
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
inferredcites →https://doi.org/10.1101/gr.7337908openalex-snapshot
ALLPATHS: De novo assembly of whole-genome shotgun microreads
inferredcites →https://doi.org/10.1104/pp.107.108647openalex-snapshot
An AGAMOUS -Related MADS-Box Gene, XAL1 ( AGL12 ), Regulates Root Meristem Cell Proliferation and Flowering Transition in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.110.081737openalex-snapshot
The Emerging Importance of Type I MADS Box Transcription Factors for Plant Reproduction
inferredcites →https://doi.org/10.1105/tpc.113.110049openalex-snapshot
Functional Conservation of MIKC*-Type MADS Box Genes in Arabidopsis and Rice Pollen Maturation
inferredcites →https://doi.org/10.1105/tpc.114.127597openalex-snapshot
Integrated Syntenic and Phylogenomic Analyses Reveal an Ancient Genome Duplication in Monocots
inferredcites →https://doi.org/10.1111/boj.12027openalex-snapshot
Genome size variation in Orchidaceae subfamily Apostasioideae: filling the phylogenetic gap
inferredcites →https://doi.org/10.1111/boj.12385openalex-snapshot
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
inferredcites →https://doi.org/10.1111/j.1095-8339.2004.00345.xopenalex-snapshot
The age of major monocot groups inferred from 800+rbcL sequences
inferredcites →https://doi.org/10.1111/j.1469-8137.2011.03794.xopenalex-snapshot
Establishing a time‐scale for plant evolution
inferredcites →https://doi.org/10.1111/jbi.12854openalex-snapshot
Orchid historical biogeography, diversification, Antarctica and the paradox of orchid dispersal
inferredcites →https://doi.org/10.1111/nph.12723openalex-snapshot
Flower development of Phalaenopsis orchid involves functionally divergent SEPALLATA ‐like genes
inferredcites →https://doi.org/10.1111/nph.13106openalex-snapshot
The velamen protects photosynthetic orchid roots against UV ‐ B damage, and a large dated phylogeny implies multiple gains and losses of this function during the C enozoic
inferredcites →https://doi.org/10.1126/science.1128691openalex-snapshot
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
inferredcites →https://doi.org/10.1126/science.1139158openalex-snapshot
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization
inferredcites →https://doi.org/10.1126/science.279.5349.407openalex-snapshot
An Arabidopsis MADS Box Gene That Controls Nutrient-Induced Changes in Root Architecture
inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot
Automated generation of heuristics for biological sequence comparison
inferredcites →https://doi.org/10.1186/1471-2164-14-563openalex-snapshot
De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana
inferredcites →https://doi.org/10.1186/1471-2164-8-242openalex-snapshot
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/s13100-015-0041-9openalex-snapshot
Repbase Update, a database of repetitive elements in eukaryotic genomes
inferredcites →https://doi.org/10.1371/journal.pone.0047768openalex-snapshot
Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
inferredcites →https://doi.org/10.2307/2446345openalex-snapshot
Fossil Clusiaceae from the Late Cretaceous (Turonian) of New Jersey and implications regarding the history of bee pollination
inferredcites →https://doi.org/10.2307/2446363openalex-snapshot
A NEW FOSSIL FLOWER FROM THE TURONIAN OF New Jersey: Dressiantha bicarpellata gen. et sp. nov. (Capparales)
inferredcites →https://doi.org/10.3724/sp.j.1142.2011.10038openalex-snapshot
Apostasia shenzhenica, A New Species of Apostasioideae (Orchidaceae) from China
inferredcites →https://doi.org/10.3732/ajb.1200416openalex-snapshot
Land plant evolutionary timeline: Gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Apostasia fujianica (Apostasioideae, Orchidaceae), a new Chinese species: evidence from morphological, genome size and molecular analyses
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inferred← citeshttps://doi.org/10.1002/ajb2.1047openalex-snapshot
Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae)
inferred← citeshttps://doi.org/10.1002/ajb2.1243openalex-snapshot
Evolution of RADIALIS and DIVARICATA gene lineages in flowering plants with an expanded sampling in non‐core eudicots
inferred← citeshttps://doi.org/10.1002/ajb2.1770openalex-snapshot
Ecological and phylogenetic constraints determine the stage of anthetic ovule development in orchids
inferred← citeshttps://doi.org/10.1002/ece3.5965openalex-snapshot
Draft genome of the famous ornamental plant Paeonia suffruticosa
inferred← citeshttps://doi.org/10.1002/evl3.188openalex-snapshot
A novel seed dispersal mode ofApostasia nipponicacould provide some clues to the early evolution of the seed dispersal system in Orchidaceae
inferred← citeshttps://doi.org/10.1007/978-1-0716-2561-3_3openalex-snapshot
Inference of Ancient Polyploidy Using Transcriptome Data
inferred← citeshttps://doi.org/10.1007/978-1-0716-2561-3_5openalex-snapshot
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Regulation of Flowering in Orchids
inferred← citeshttps://doi.org/10.1007/978-3-030-66826-6_7openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-030-66826-6_9openalex-snapshot
Genes and Noncoding RNAs Involved in Flower Development in Orchis italica
inferred← citeshttps://doi.org/10.1007/978-3-031-78653-2_13openalex-snapshot
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Modern Techniques for Plant Breeding in Ornamentals
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Modern Techniques for Plant Breeding in Ornamentals
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Role of Mycorrhiza and Its Application to Crop Production: A Path Ahead for Sustainable Agriculture
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Multiomics Approaches for Conservation of Endangered Orchids: Advances, Applications, and Future Prospects
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Differential involvement of WRKY genes in abiotic stress tolerance of Dendrobium huoshanense
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Integrated metabolomic and transcriptomic analysis reveals the mechanism of high polysaccharide content in tetraploid Dendrobium catenatum Lindl
inferred← citeshttps://doi.org/10.1016/j.indcrop.2025.121144openalex-snapshot
Identification and analysis of slow anion channel proteins (SLACs) gene families involved in drought stress in Orchidaceae
inferred← citeshttps://doi.org/10.1016/j.isci.2019.02.001openalex-snapshot
A Likely Ancient Genome Duplication in the Speciose Reef-Building Coral Genus, Acropora
inferred← citeshttps://doi.org/10.1016/j.jplph.2020.153356openalex-snapshot
Characterization of LEA genes in Dendrobium officinale and one Gene in induction of callus
inferred← citeshttps://doi.org/10.1016/j.molp.2017.12.010openalex-snapshot
Functional Divergence between Subgenomes and Gene Pairs after Whole Genome Duplications
inferred← citeshttps://doi.org/10.1016/j.molp.2020.07.019openalex-snapshot
A Chromosome-Level Genome Assembly of Garlic (Allium sativum) Provides Insights into Genome Evolution and Allicin Biosynthesis
inferred← citeshttps://doi.org/10.1016/j.molp.2024.12.010openalex-snapshot
Genomic, transcriptomic, and metabolomic analyses reveal convergent evolution of oxime biosynthesis in Darwin’s orchid
inferred← citeshttps://doi.org/10.1016/j.molp.2026.03.016openalex-snapshot
Single-cell and haplotype-resolved transcriptomics reveal molecular signatures of orchid floral structures
inferred← citeshttps://doi.org/10.1016/j.pbi.2018.03.001openalex-snapshot
Post-polyploid diploidization and diversification through dysploid changes
inferred← citeshttps://doi.org/10.1016/j.plaphy.2024.108891openalex-snapshot
Multi-omics analyses and botanical perfumer hypothesis provide insights into the formation and maintenance of aromatic characteristics of Dendrobium loddigesii flowers
inferred← citeshttps://doi.org/10.1016/j.plaphy.2025.110241openalex-snapshot
Transcriptome-metabolome convergence reveals that BsPP2C17 and BsPP2C27 of Bletilla striata (Orchidaceae) significantly regulate ABA-mediated seed germination
inferred← citeshttps://doi.org/10.1016/j.plaphy.2026.111066openalex-snapshot
Synergism and antagonism: Unraveling the regulatory network of perianth coloration in Dendrobium nobile Lindl.
inferred← citeshttps://doi.org/10.1016/j.pld.2018.06.005openalex-snapshot
Plant phylogenomics based on genome-partitioning strategies: Progress and prospects
inferred← citeshttps://doi.org/10.1016/j.pld.2019.12.001openalex-snapshot
Transcriptome Analysis Reveals Clues into leaf-like flower mutant in Chinese orchid Cymbidium ensifolium
inferred← citeshttps://doi.org/10.1016/j.pld.2021.08.004openalex-snapshot
Lycophyte transcriptomes reveal two whole-genome duplications in Lycopodiaceae: Insights into the polyploidization of Phlegmariurus
inferred← citeshttps://doi.org/10.1016/j.pld.2022.03.004openalex-snapshot
Phylogenetic endemism of the orchids of Megamexico reveals complementary areas for conservation
inferred← citeshttps://doi.org/10.1016/j.pld.2024.05.002openalex-snapshot
Progress in systematics and biogeography of Orchidaceae
inferred← citeshttps://doi.org/10.1016/j.sajb.2022.10.035openalex-snapshot
Comprehensive in silico analysis of Phospholipase D gene family in economically important orchids
inferred← citeshttps://doi.org/10.1016/j.scienta.2021.110724openalex-snapshot
Mycorrhizal fungus Coprinellus disseminatus influences seed germination of the terrestrial orchid Cremastra appendiculata (D. Don) Makino
inferred← citeshttps://doi.org/10.1016/j.scienta.2024.113416openalex-snapshot
Bridging photosynthetic worlds: Creating C4-CAM chimeras through embryo grafting in maize and orchids
inferred← citeshttps://doi.org/10.1016/j.scienta.2024.113514openalex-snapshot
The cellulose synthase-like G3 (CslG3) gene mediates polysaccharide synthesis and drought stress response in Dendrobium catenatum
inferred← citeshttps://doi.org/10.1016/j.scienta.2024.113577openalex-snapshot
Homeodomain leucine zipper (HD-ZIP) gene family in Apostasia shenzhenica Z. J. Liu & L. J. Chen (Orchidaceae): In silico identification and characterization
inferred← citeshttps://doi.org/10.1016/j.scienta.2024.113614openalex-snapshot
Weighted correlation network analysis and differential expression analysis identify auxin-related genes responsible for adventitious root formation in an epiphytic Dendrobium orchid (Dendrobium moniliforme (L.) Sw.)
inferred← citeshttps://doi.org/10.1016/j.scienta.2024.113887openalex-snapshot
Genome-wide analysis of MADS-box genes reveals their roles in floral organ development in Lagerstroemia
inferred← citeshttps://doi.org/10.1016/j.tplants.2024.02.001openalex-snapshot
Orchids acquire fungal carbon for seed germination: pathways and players
inferred← citeshttps://doi.org/10.1016/j.xplc.2022.100456openalex-snapshot
A chromosome-level genome assembly for Dracaena cochinchinensis reveals the molecular basis of its longevity and formation of dragon’s blood
inferred← citeshttps://doi.org/10.1016/j.xplc.2023.100564openalex-snapshot
High-quality Cymbidium mannii genome and multifaceted regulation of crassulacean acid metabolism in epiphytes
inferred← citeshttps://doi.org/10.1016/j.xplc.2025.101561openalex-snapshot
Unidirectional genomic introgression facilitates the colonization of an invasive orchid in arid, metal-enriched sedimentary habitats
inferred← citeshttps://doi.org/10.1016/j.xplc.2026.101776openalex-snapshot
Adaptive genomic signatures in PEBP genes reveal flowering plasticity and ecological specialization in Orchidaceae
inferred← citeshttps://doi.org/10.1016/j.xplc.2026.101937openalex-snapshot
Pan-orchid transcriptomics sheds light on candidate regulators and the evolution of complex floral morphology and symmetry
inferred← citeshttps://doi.org/10.1016/j.ygeno.2021.04.023openalex-snapshot
Draft genome of Korthalsia laciniosa (Griff.) Mart., a climbing rattan elucidates its phylogenetic position
inferred← citeshttps://doi.org/10.1016/j.yjmcc.2020.03.005openalex-snapshot
Visualization of cardiovascular development, physiology and disease at the single-cell level: Opportunities and future challenges
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.04.021openalex-snapshot
New phylogenetic insights toward developing a natural generic classification of African angraecoid orchids (Vandeae, Orchidaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.06.041openalex-snapshot
From tree tops to the ground: Reversals to terrestrial habit in Galeandra orchids (Epidendroideae: Catasetinae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107105openalex-snapshot
Rapid radiation of angraecoids (Orchidaceae, Angraecinae) in tropical Africa characterised by multiple karyotypic shifts under major environmental instability
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107797openalex-snapshot
Origin and diversification of a Himalayan orchid genus Pleione
inferred← citeshttps://doi.org/10.1038/d41586-018-01075-5openalex-snapshot
The lost art of looking at plants
inferred← citeshttps://doi.org/10.1038/s41438-020-00368-zopenalex-snapshot
The Phoebe genome sheds light on the evolution of magnoliids
inferred← citeshttps://doi.org/10.1038/s41438-020-0307-3openalex-snapshot
The genome sequence of star fruit (Averrhoa carambola)
inferred← citeshttps://doi.org/10.1038/s41438-020-0330-4openalex-snapshot
Functional analysis of a novel C-glycosyltransferase in the orchid Dendrobium catenatum
inferred← citeshttps://doi.org/10.1038/s41438-021-00499-xopenalex-snapshot
Research advances in and prospects of ornamental plant genomics
inferred← citeshttps://doi.org/10.1038/s41438-021-00621-zopenalex-snapshot
Chromosome-scale assembly of the Dendrobium chrysotoxum genome enhances the understanding of orchid evolution
inferred← citeshttps://doi.org/10.1038/s41438-021-00683-zopenalex-snapshot
The Cymbidium genome reveals the evolution of unique morphological traits
inferred← citeshttps://doi.org/10.1038/s41467-018-03423-5openalex-snapshot
The Gastrodia elata genome provides insights into plant adaptation to heterotrophy
inferred← citeshttps://doi.org/10.1038/s41467-022-29114-wopenalex-snapshot
Chromosome evolution and the genetic basis of agronomically important traits in greater yam
inferred← citeshttps://doi.org/10.1038/s41467-022-34491-3openalex-snapshot
Chromosome-level genome assembly of bunching onion illuminates genome evolution and flavor formation in Allium crops
inferred← citeshttps://doi.org/10.1038/s41467-023-38829-3openalex-snapshot
Diploid and tetraploid genomes of Acorus and the evolution of monocots
inferred← citeshttps://doi.org/10.1038/s41467-023-40002-9openalex-snapshot
Comparative genomics reveals a unique nitrogen-carbon balance system in Asteraceae.
inferred← citeshttps://doi.org/10.1038/s41467-024-50622-4openalex-snapshot
Genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and pollinator adaptation
inferred← citeshttps://doi.org/10.1038/s41467-024-53756-7openalex-snapshot
Tracing the evolutionary and genetic footprints of atmospheric tillandsioids transition from land to air
inferred← citeshttps://doi.org/10.1038/s41467-024-55545-8openalex-snapshot
The giant genome of lily provides insights into the hybridization of cultivated lilies
inferred← citeshttps://doi.org/10.1038/s41467-025-61289-wopenalex-snapshot
Genomic and epigenomic insight into giga-chromosome architecture and adaptive evolution of royal lily (Lilium regale)
inferred← citeshttps://doi.org/10.1038/s41467-025-66688-7openalex-snapshot
Comparative genomics analyses reveal genomic variation and evolutionary adaptation in Dendrobium orchids
inferred← citeshttps://doi.org/10.1038/s41477-018-0349-9openalex-snapshot
Genome structure and evolution of Antirrhinum majus L
inferred← citeshttps://doi.org/10.1038/s41477-022-01127-9openalex-snapshot
Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy
inferred← citeshttps://doi.org/10.1038/s41477-022-01137-7openalex-snapshot
The evolutionary mechanisms of mycohetero-trophic orchids
inferred← citeshttps://doi.org/10.1038/s41477-023-01562-2openalex-snapshot
Subgenome dominance shapes novel gene evolution in the decaploid pitcher plant Nepenthes gracilis
inferred← citeshttps://doi.org/10.1038/s41477-024-01902-wopenalex-snapshot
Pangeneric genome analyses reveal the evolution and diversity of the orchid genus Dendrobium
inferred← citeshttps://doi.org/10.1038/s41477-025-01925-xopenalex-snapshot
Comparative genome analysis unravels adaptive evolution in Dendrobium orchids
inferred← citeshttps://doi.org/10.1038/s41559-022-01932-7openalex-snapshot
Detecting macroevolutionary genotype–phenotype associations using error-corrected rates of protein convergence
inferred← citeshttps://doi.org/10.1038/s41586-019-1852-5openalex-snapshot
The water lily genome and the early evolution of flowering plants
inferred← citeshttps://doi.org/10.1038/s41588-023-01546-0openalex-snapshot
Chromosome-level genomes of three key Allium crops and their trait evolution
inferred← citeshttps://doi.org/10.1038/s41597-025-05916-7openalex-snapshot
Chromosomal-level genome assembly of the autotetraploid Anoectochilus roxburghii (Jinxianlian, Orchidaceae)
inferred← citeshttps://doi.org/10.1038/s41597-025-06181-4openalex-snapshot
A haplotype-resolved genome assembly of Anoectochilus roxburghii
inferred← citeshttps://doi.org/10.1038/s41598-020-66932-8openalex-snapshot
Expression regulation of MALATE SYNTHASE involved in glyoxylate cycle during protocorm development in Phalaenopsis aphrodite (Orchidaceae)
inferred← citeshttps://doi.org/10.1038/s41598-020-69389-xopenalex-snapshot
A high-quality reference genome for cabbage obtained with SMRT reveals novel genomic features and evolutionary characteristics
inferred← citeshttps://doi.org/10.1038/s41598-020-74789-0openalex-snapshot
Metabolomic and transcriptomic analyses reveal the regulation of pigmentation in the purple variety of Dendrobium officinale
inferred← citeshttps://doi.org/10.1038/s41598-020-79163-8openalex-snapshot
The pineapple MADS-box gene family and the evolution of early monocot flower
inferred← citeshttps://doi.org/10.1038/s41598-020-79877-9openalex-snapshot
Orchid Bsister gene PeMADS28 displays conserved function in ovule integument development
inferred← citeshttps://doi.org/10.1038/s41598-021-81087-wopenalex-snapshot
The specific DNA barcodes based on chloroplast genes for species identification of Orchidaceae plants
inferred← citeshttps://doi.org/10.1038/s41598-021-83664-5openalex-snapshot
Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution
inferred← citeshttps://doi.org/10.1038/s42003-021-02152-8openalex-snapshot
Wolfberry genomes and the evolution of Lycium (Solanaceae)
inferred← citeshttps://doi.org/10.1038/s42003-022-03940-6openalex-snapshot
Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim ‘Agnes’ reveals metabolic pathways regulating floral traits
inferred← citeshttps://doi.org/10.1038/s42003-022-04229-4openalex-snapshot
A draft genome of the medicinal plant Cremastra appendiculata (D. Don) provides insights into the colchicine biosynthetic pathway
inferred← citeshttps://doi.org/10.1038/s43016-020-00197-2openalex-snapshot
A phased Vanilla planifolia genome enables genetic improvement of flavour and production
inferred← citeshttps://doi.org/10.1038/sdata.2018.274openalex-snapshot
Building an octaploid genome and transcriptome of the medicinal plant Pogostemon cablin from Lamiales
inferred← citeshttps://doi.org/10.1063/1.5095962openalex-snapshot
Divide and conquer: A perspective on biochips for single-cell and rare-molecule analysis by next-generation sequencing
inferred← citeshttps://doi.org/10.1073/pnas.1922873117openalex-snapshot
Water lily ( Nymphaea thermarum ) genome reveals variable genomic signatures of ancient vascular cambium losses
inferred← citeshttps://doi.org/10.1080/07352689.2021.1985819openalex-snapshot
Hyper-Recombinant Plants: An Emerging Field for Plant Breeding
inferred← citeshttps://doi.org/10.1080/07391102.2021.2019120openalex-snapshot
Genome-wide identification and analysis of the PAL genes from the orchids Apostasia shenzhenica, Dendrobium catenatum and Phalaenopsis equestris
inferred← citeshttps://doi.org/10.1080/07391102.2022.2090439openalex-snapshot
Polyketide synthases (PKSs) of secondary metabolism: in silico identification and characterization in orchids
inferred← citeshttps://doi.org/10.1080/14620316.2020.1859412openalex-snapshot
Regulatory mechanisms underlying florigenesis in Vanilla planifolia Andrews: A study of MADS-box gene family
inferred← citeshttps://doi.org/10.1080/14620316.2022.2164524openalex-snapshot
Emerging trends and insights into the cultivation strategies, ethnomedicinal uses, and socio-economic attributes of orchids
inferred← citeshttps://doi.org/10.1080/15592324.2023.2180159openalex-snapshot
Effect of light conditions on trophic level and gene expression of partially mycoheterotrophic orchid, Cymbidium goeringii
inferred← citeshttps://doi.org/10.1080/23802359.2019.1591192openalex-snapshot
Complete plastid genome ofApostasia shenzhenica(Orchidaceae)
inferred← citeshttps://doi.org/10.1080/23802359.2021.1872429openalex-snapshot
The complete chloroplast genome of an endangered species Apostasia ramifera (Orchidaceae)
inferred← citeshttps://doi.org/10.1093/aob/mcae161openalex-snapshot
Phylogenomic analysis of target enrichment and transcriptome data uncovers rapid radiation and extensive hybridization in the slipper orchid genus Cypripedium
inferred← citeshttps://doi.org/10.1093/aob/mcae202openalex-snapshot
Orchid phylogenetics and evolution: history, current status and prospects
inferred← citeshttps://doi.org/10.1093/aob/mcy048openalex-snapshot
Evolutionary and functional potential of ploidy increase within individual plants: somatic ploidy mapping of the complex labellum of sexually deceptive bee orchids
inferred← citeshttps://doi.org/10.1093/aob/mcz013openalex-snapshot
Duplication and selection in β-ketoacyl-ACP synthase gene lineages in the sexually deceptive Chiloglottis (Orchidaceace)
inferred← citeshttps://doi.org/10.1093/bfgp/ely007openalex-snapshot
Significance of whole-genome duplications on the emergence of evolutionary novelties
inferred← citeshttps://doi.org/10.1093/bioinformatics/btab602openalex-snapshot
ksrates : positioning whole-genome duplications relative to speciation events in K S distributions
inferred← citeshttps://doi.org/10.1093/bioinformatics/btac669openalex-snapshot
Tree2GD: a phylogenomic method to detect large-scale gene duplication events
inferred← citeshttps://doi.org/10.1093/g3journal/jkab433openalex-snapshot
Chromosome-level genome assembly of the fully mycoheterotrophic orchid Gastrodia elata
inferred← citeshttps://doi.org/10.1093/gbe/evac093openalex-snapshot
The Origin and Evolution of RNase T2 Family and Gametophytic Self-incompatibility System in Plants
inferred← citeshttps://doi.org/10.1093/gbe/evz092openalex-snapshot
Ancient Polyploidy and Genome Evolution in Palms
inferred← citeshttps://doi.org/10.1093/gigascience/giz072openalex-snapshot
A chromosome-scale genome assembly of cucumber (Cucumis sativus L.)
inferred← citeshttps://doi.org/10.1093/gigascience/giz116openalex-snapshot
A draft genome assembly of halophyte Suaeda aralocaspica, a plant that performs C4 photosynthesis within individual cells
inferred← citeshttps://doi.org/10.1093/hr/uhab022openalex-snapshot
The Chrysanthemum lavandulifolium genome and the molecular mechanism underlying diverse capitulum types
inferred← citeshttps://doi.org/10.1093/hr/uhac220openalex-snapshot
Advances and prospects of orchid research and industrialization
inferred← citeshttps://doi.org/10.1093/hr/uhad192openalex-snapshot
Designing of future ornamental crops: a biotechnological driven perspective
inferred← citeshttps://doi.org/10.1093/hr/uhaf329openalex-snapshot
A novel CsbZIP26–CsSEP4–CsSPL18 regulatory module governs gynostemium morphology and floral architecture in Cymbidium sinense
inferred← citeshttps://doi.org/10.1093/hr/uhag099openalex-snapshot
Chromosome-level genome assembly and population genomics unveil strigolactone-regulated growth adaptation in the mycoheterotrophic orchid Gastrodia elata
inferred← citeshttps://doi.org/10.1093/jxb/erab195openalex-snapshot
The ancestral duplicated DL/CRC orthologs, PeDL1 and PeDL2 , function in orchid reproductive organ innovation
inferred← citeshttps://doi.org/10.1093/jxb/erab484openalex-snapshot
MADS-box transcription factors determine the duration of temporary winter dormancy in closely related evergreen and deciduousIrisspp.
inferred← citeshttps://doi.org/10.1093/jxb/erac016openalex-snapshot
Molecular genetic insights into orchid reproductive development
inferred← citeshttps://doi.org/10.1093/molbev/msaa111openalex-snapshot
Model-Based Detection of Whole-Genome Duplications in a Phylogeny
inferred← citeshttps://doi.org/10.1093/molbev/msab355openalex-snapshot
Endosperm Evolution by Duplicated and Neofunctionalized Type I MADS-Box Transcription Factors
inferred← citeshttps://doi.org/10.1093/molbev/msz198openalex-snapshot
Ancient Mitochondrial Gene Transfer between Fungi and the Orchids
inferred← citeshttps://doi.org/10.1093/pcp/pcaf026openalex-snapshot
Fine-tuned terpene synthase gene expression, functional promiscuity, and subcellular localization: implications for the evolution of complex floral volatile bouquet in Caladenia orchids
inferred← citeshttps://doi.org/10.1093/plcell/koab015openalex-snapshot
The Pharus latifolius genome bridges the gap of early grass evolution
inferred← citeshttps://doi.org/10.1093/plphys/kiac276openalex-snapshot
Core circadian clock and light signaling genes brought into genetic linkage across the green lineage
inferred← citeshttps://doi.org/10.1093/plphys/kiad550openalex-snapshot
Citronellol biosynthesis in pelargonium is a multistep pathway involving progesterone 5β-reductase and/or iridoid synthase-like enzymes
inferred← citeshttps://doi.org/10.1093/sysbio/syaf069openalex-snapshot
Nuclear Phylogenomic Insights into Relationships, Support, and Conflict Among the Early Diverging Lineages of the Megadiverse Epidendroid Orchids
inferred← citeshttps://doi.org/10.1101/2021.02.28.433234openalex-snapshot
ksrates : positioning whole-genome duplications relative to speciation events in K S distributions
inferred← citeshttps://doi.org/10.1101/2022.02.08.479636openalex-snapshot
The Chromosome-level Genome of Dracaena cochinchinesis Provides Insights into its Biological Features and the Mechanism of Dragon’s Blood Formation
inferred← citeshttps://doi.org/10.1101/2023.06.21.545690openalex-snapshot
A case study of Whirly1 ( WHY1 ) evolution in the angiosperms: altered sequence, splicing, and expression in a clade of early-transitional mycoheterotrophic orchids
inferred← citeshttps://doi.org/10.1101/2025.02.02.635999openalex-snapshot
Towards accurate, reference-free differential expression: A comprehensive evaluation of long-read de novo transcriptome assembly
inferred← citeshttps://doi.org/10.1101/2025.06.13.659439openalex-snapshot
Super-giga and tiny orchid genomes illuminate evolution of Orchidaceae
inferred← citeshttps://doi.org/10.1101/2025.10.08.681153openalex-snapshot
Sand-Mediated DNA Extraction From Orchids For Genomic Applications
inferred← citeshttps://doi.org/10.1101/774018openalex-snapshot
Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution
inferred← citeshttps://doi.org/10.1101/cshperspect.a025791openalex-snapshot
Next-Generation Sequencing Strategies
inferred← citeshttps://doi.org/10.1111/1365-2435.70129openalex-snapshot
Do sun orchids mimic buzz‐pollinated plants? An experimental test of the adaptive significance of false anthers
inferred← citeshttps://doi.org/10.1111/1755-0998.13155openalex-snapshot
A linked‐read approach to museomics: Higher quality de novo genome assemblies from degraded tissues
inferred← citeshttps://doi.org/10.1111/1755-0998.13327openalex-snapshot
A multitiered sequence capture strategy spanning broad evolutionary scales: Application for phylogenetic and phylogeographic studies of orchids
inferred← citeshttps://doi.org/10.1111/1755-0998.13537openalex-snapshot
A chromosome‐scale genome assembly and annotation of the spring orchid ( Cymbidium goeringii )
inferred← citeshttps://doi.org/10.1111/jipb.13534openalex-snapshot
ERF5 enhances protocorm‐like body regeneration via enhancement of STM expression in Dendrobium orchid
inferred← citeshttps://doi.org/10.1111/jipb.13625openalex-snapshot
Genomic analysis of Nypa fruticans elucidates its intertidal adaptations and early palm evolution
inferred← citeshttps://doi.org/10.1111/jipb.70315openalex-snapshot
Orchid genome evolution and trait innovation
inferred← citeshttps://doi.org/10.1111/mec.17334openalex-snapshot
The road less taken: Dihydroflavonol 4‐reductase inactivation and delphinidin anthocyanin loss underpins a natural intraspecific flower colour variation
inferred← citeshttps://doi.org/10.1111/nph.15357openalex-snapshot
Widespread ancient whole‐genome duplications in Malpighiales coincide with Eocene global climatic upheaval
inferred← citeshttps://doi.org/10.1111/nph.17049openalex-snapshot
Evidence for mycorrhizal cheating in Apostasia nipponica, an early‐diverging member of the Orchidaceae
inferred← citeshttps://doi.org/10.1111/nph.18495openalex-snapshot
Transcriptomic heterochrony and completely cleistogamous flower development in the mycoheterotrophic orchid Gastrodia
inferred← citeshttps://doi.org/10.1111/nph.18607openalex-snapshot
Revisiting ancient polyploidy in leptosporangiate ferns
inferred← citeshttps://doi.org/10.1111/nph.18796openalex-snapshot
Insights into the convergent evolution of fructan biosynthesis in angiosperms from the highly characteristic chicory genome
inferred← citeshttps://doi.org/10.1111/nph.19541openalex-snapshot
The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application
inferred← citeshttps://doi.org/10.1111/pbi.12936openalex-snapshot
Chromosome‐level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding
inferred← citeshttps://doi.org/10.1111/pbi.13676openalex-snapshot
The genome ofCymbidium sinenserevealed the evolution of orchid traits
inferred← citeshttps://doi.org/10.1111/pbi.13926openalex-snapshot
The complex genome and adaptive evolution of polyploid Chinese pepper (Zanthoxylum armatum and Zanthoxylum bungeanum)
inferred← citeshttps://doi.org/10.1111/pbi.70025openalex-snapshot
Integrative omics reveals mechanisms of biosynthesis and regulation of floral scent in Cymbidium tracyanum
inferred← citeshttps://doi.org/10.1111/pbi.70445openalex-snapshot
OrchidMD: An Integrated and User‐Interactive Orchid Multi‐Omics Database for Mining Genes and Biological Research
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