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Fundamentals of experimental design for cDNA microarrays

https://doi.org/10.1038/ng1031
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/gepi.202openalex-snapshot
Design of studies using DNA microarrays
inferredcites →https://doi.org/10.1017/s0016672301005055openalex-snapshot
Statistical design and the analysis of gene expression microarray data
inferredcites →https://doi.org/10.1017/s0016672308009713openalex-snapshot
Statistical design and the analysis of gene expression microarray data
inferredcites →https://doi.org/10.1038/ng1032openalex-snapshot
Microarray data normalization and transformation
inferredcites →https://doi.org/10.1038/ng1033openalex-snapshot
From patterns to pathways: gene expression data analysis comes of age
inferredcites →https://doi.org/10.1038/ng1201-355openalex-snapshot
Sex, flies and microarrays
inferredcites →https://doi.org/10.1038/ng766openalex-snapshot
The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
inferredcites →https://doi.org/10.1038/ng983openalex-snapshot
Variation in gene expression within and among natural populations
inferredcites →https://doi.org/10.1038/nrg863openalex-snapshot
Design issues for cDNA microarray experiments
inferredcites →https://doi.org/10.1073/pnas.221465998openalex-snapshot
Project normal: Defining normal variance in mouse gene expression
inferredcites →https://doi.org/10.1073/pnas.97.18.9834openalex-snapshot
Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
inferredcites →https://doi.org/10.1089/10665270050514954openalex-snapshot
Analysis of Variance for Gene Expression Microarray Data
inferredcites →https://doi.org/10.1089/106652701753307520openalex-snapshot
Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models
inferredcites →https://doi.org/10.1093/biostatistics/2.2.183openalex-snapshot
Experimental design for gene expression microarrays
inferredcites →https://doi.org/10.1093/nar/30.4.e15openalex-snapshot
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
inferredcites →https://doi.org/10.1098/rspl.1896.0076openalex-snapshot
Mathematical contributions to the theory of evolution.—On a form of spurious correlation which may arise when indices are used in the measurement of organs
inferredcites →https://doi.org/10.1101/gr.10.12.2022openalex-snapshot
Microarray Expression Profiling Identifies Genes with Altered Expression in HDL-Deficient Mice
inferredcites →https://doi.org/10.1126/science.1069516openalex-snapshot
Genetic Dissection of Transcriptional Regulation in Budding Yeast
inferredcites →https://doi.org/10.1136/bmj.1.3923.554-aopenalex-snapshot
Design of Experiments
inferredcites →https://doi.org/10.1152/jappl.1949.2.1.1openalex-snapshot
Fallacy of Per-Weight and Per-Surface Area Standards, and Their Relation to Spurious Correlation
inferredcites →https://doi.org/10.1198/000313001317098220openalex-snapshot
Replicating Effects and Biases

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Escherichia coli W shows fast, highly oxidative sucrose metabolism and low acetate formation
inferred← citeshttps://doi.org/10.1007/s00284-012-0154-zopenalex-snapshot
Multipurpose Instantaneous Microarray Detection of Acute Encephalitis Causing Viruses and Their Expression Profiles
inferred← citeshttps://doi.org/10.1007/s00294-004-0551-3openalex-snapshot
A two-step strategy for detecting differential gene expression in cDNA microarray data
inferred← citeshttps://doi.org/10.1007/s00296-010-1546-7openalex-snapshot
Cold and heat pattern of rheumatoid arthritis in traditional Chinese medicine: distinct molecular signatures indentified by microarray expression profiles in CD4-positive T cell
inferred← citeshttps://doi.org/10.1007/s00299-013-1496-0openalex-snapshot
Wood chemistry analysis and expression profiling of a poplar clone expressing a tyrosine-rich peptide
inferred← citeshttps://doi.org/10.1007/s00335-004-3012-xopenalex-snapshot
Assessment of a systematic expression profiling approach in ENU-induced mouse mutant lines
inferred← citeshttps://doi.org/10.1007/s00335-005-0008-0openalex-snapshot
Gene expression profiling of jejunal Peyer’s patches in juvenile and adult pigs
inferred← citeshttps://doi.org/10.1007/s00335-005-0189-6openalex-snapshot
A review of statistical methods for expression quantitative trait loci mapping
inferred← citeshttps://doi.org/10.1007/s00338-007-0206-1openalex-snapshot
Genomic and microarray approaches to coral reef conservation biology
inferred← citeshttps://doi.org/10.1007/s00438-004-1103-8openalex-snapshot
Identification by suppression subtractive hybridization of genes that are differentially expressed between near-isogenic maize lines in association with sugarcane mosaic virus resistance
inferred← citeshttps://doi.org/10.1007/s00438-006-0125-9openalex-snapshot
Microarray analysis of transcript accumulation during perithecium development in the filamentous fungus Gibberella zeae (anamorph Fusarium graminearum)
inferred← citeshttps://doi.org/10.1007/s00500-010-0542-xopenalex-snapshot
Gene expression studies with DGL global optimization for the molecular classification of cancer
inferred← citeshttps://doi.org/10.1007/s10126-009-9231-0openalex-snapshot
Design and Performance of a Turbot (Scophthalmus maximus) Oligo-microarray Based on ESTs from Immune Tissues
inferred← citeshttps://doi.org/10.1007/s10142-003-0085-7openalex-snapshot
A mixture model approach to detecting differentially expressed genes with microarray data
inferred← citeshttps://doi.org/10.1007/s10142-011-0253-0openalex-snapshot
Alternating temperature breaks dormancy in leafy spurge seeds and impacts signaling networks associated with HY5
inferred← citeshttps://doi.org/10.1007/s10162-004-5046-xopenalex-snapshot
Differential Expression of Genes within the Cochlea as Defined by a Custom Mouse Inner Ear Microarray
inferred← citeshttps://doi.org/10.1007/s10439-007-9313-yopenalex-snapshot
chip artifact CORRECTion (caCORRECT): A Bioinformatics System for Quality Assurance of Genomics and Proteomics Array Data
inferred← citeshttps://doi.org/10.1007/s10658-004-2134-zopenalex-snapshot
A broad characterization of the transcriptional profile of the compatible tomato response to the plant parasitic root knot nematode Meloidogyne javanica
inferred← citeshttps://doi.org/10.1007/s10719-009-9249-6openalex-snapshot
Polar lipid remodeling and increased sulfatide expression are associated with the glioma therapeutic candidates, wild type p53 elevation and the topoisomerase-1 inhibitor, Irinotecan
inferred← citeshttps://doi.org/10.1007/s10886-006-9086-zopenalex-snapshot
Application of Pharmacological Approaches to Plant–Mammal Interactions
inferred← citeshttps://doi.org/10.1007/s11103-009-9569-8openalex-snapshot
Initial changes in the transcriptome of Euphorbia esula seeds induced to germinate with a combination of constant and diurnal alternating temperatures
inferred← citeshttps://doi.org/10.1007/s11103-010-9621-8openalex-snapshot
Low temperatures impact dormancy status, flowering competence, and transcript profiles in crown buds of leafy spurge
inferred← citeshttps://doi.org/10.1007/s11105-008-0068-xopenalex-snapshot
Genome-wide Comparisons of Gene Expression for Yield Heterosis in Maize
inferred← citeshttps://doi.org/10.1007/s11105-009-0144-xopenalex-snapshot
A Cross-species Transcriptional Profile Analysis of Heartwood Formation in Black Walnut
inferred← citeshttps://doi.org/10.1007/s11481-009-9167-1openalex-snapshot
Gene Expression Profiles of HIV-1-Infected Glia and Brain: Toward Better Understanding of the Role of Astrocytes in HIV-1-Associated Neurocognitive Disorders
inferred← citeshttps://doi.org/10.1007/s12561-010-9024-zopenalex-snapshot
Identifying Differentially Expressed Genes for Time-course Microarray Data through Functional Data Analysis
inferred← citeshttps://doi.org/10.1007/s40003-013-0059-5openalex-snapshot
Row–Column Designs for 2 n factorial 2-Colour Microarray Experiments for Estimation of Main Effects and Two-Factor Interactions with Orthogonal Parameterization
inferred← citeshttps://doi.org/10.1016/b978-0-08-099387-4.00006-5openalex-snapshot
Array-based approaches to bacterial transcriptome analysis
inferred← citeshttps://doi.org/10.1016/b978-0-12-369420-1.00013-5openalex-snapshot
DNA Microarrays in Biological Discovery and Patient Care
inferred← citeshttps://doi.org/10.1016/b978-0-12-369420-1.00023-8openalex-snapshot
Principles of Study Design
inferred← citeshttps://doi.org/10.1016/b978-0-12-369420-1.00061-5openalex-snapshot
Vaccines
inferred← citeshttps://doi.org/10.1016/b978-0-12-374934-5.00007-6openalex-snapshot
DNA Microarrays in Biological Discovery and Patient Care
inferred← citeshttps://doi.org/10.1016/b978-0-12-374934-5.00028-3openalex-snapshot
Genetics and Genomics of Hypertrophic Cardiomyopathy
inferred← citeshttps://doi.org/10.1016/b978-0-12-382227-7.00050-1openalex-snapshot
Hypertrophic Cardiomyopathies
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.12367-4openalex-snapshot
Predictive Toxicology: Latest Scientific Developments and Their Application in Safety Assessment
inferred← citeshttps://doi.org/10.1016/b978-0-12-801663-3.00009-1openalex-snapshot
Experimental Design and Statistical Analysis of Threshold Studies
inferred← citeshttps://doi.org/10.1016/b978-0-12-816356-6.16001-xopenalex-snapshot
References
inferred← citeshttps://doi.org/10.1016/b978-0-12-818908-5.00010-xopenalex-snapshot
Nanobiotechnology
inferred← citeshttps://doi.org/10.1016/b978-0-323-26433-4.00002-6openalex-snapshot
Nano-based Drug Delivery and Diagnostic Systems
inferred← citeshttps://doi.org/10.1016/b978-012088387-5/50014-5openalex-snapshot
Microarray Analysis of Gene Expression Changes in Aging
inferred← citeshttps://doi.org/10.1016/b978-012369391-4/50011-4openalex-snapshot
Application of High-Throughput Technologies to Aging-Related Research
inferred← citeshttps://doi.org/10.1016/b978-012436643-5/50093-6openalex-snapshot
(Post) Genomic Stem Cell
inferred← citeshttps://doi.org/10.1016/bs.coac.2018.08.002openalex-snapshot
Introduction to Microarrays Technology and Data Analysis
inferred← citeshttps://doi.org/10.1016/j.ab.2004.05.010openalex-snapshot
Possible sources of dye-related signal correlation bias in two-color DNA microarray assays
inferred← citeshttps://doi.org/10.1016/j.ab.2005.08.027openalex-snapshot
A quality-controlled microarray method for gene expression profiling
inferred← citeshttps://doi.org/10.1016/j.ab.2008.09.003openalex-snapshot
A dual-probe hybridization method for reducing variability in single nucleotide polymorphism analysis with oligonucleotide microarrays
inferred← citeshttps://doi.org/10.1016/j.addr.2023.114992openalex-snapshot
Omics approaches for the assessment of biological responses to nanoparticles
inferred← citeshttps://doi.org/10.1016/j.ajpath.2011.09.015openalex-snapshot
Chlamydia trachomatis Disturbs Epithelial Tissue Homeostasis in Fallopian Tubes via Paracrine Wnt Signaling
inferred← citeshttps://doi.org/10.1016/j.aquatox.2010.09.011openalex-snapshot
Investigations of transcript expression in fathead minnow (Pimephales promelas) brain tissue reveal toxicological impacts of RDX exposure
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