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Recombineering in Mycobacterium tuberculosis

https://doi.org/10.1038/nmeth996
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Regulation of the inducible acetamidase gene of Mycobacterium smegmatis
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RecE/RecT and Redα/Redβ initiate double-stranded break repair by specifically interacting with their respective partners
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In vivo studies on the interaction of RecBCD enzyme and lambda Gam protein
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The uraA locus and homologous recombination in Mycobacterium bovis BCG
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Allelic exchange in Mycobacterium tuberculosis with long linear recombination substrates
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Genetic Engineering Using Homologous Recombination
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Classification and evolutionary history of the single-strand annealing proteins, RecT, Redβ, ERF and RAD52
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Control of Phage Bxb1 Excision by a Novel Recombination Directionality Factor
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Exploring the Mycobacteriophage Metaproteome: Phage Genomics as an Educational Platform

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Efficient method for targeted gene disruption by homologous recombination in Mycobacterium avium subspecie paratuberculosis
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Crystal Structure of E. coli RecE Protein Reveals a Toroidal Tetramer for Processing Double-Stranded DNA Breaks
inferred← citeshttps://doi.org/10.1016/j.synbio.2021.08.001openalex-snapshot
A CRISPR/Cas9-based single-stranded DNA recombineering system for genome editing of Rhodococcus opacus PD630
inferred← citeshttps://doi.org/10.1016/j.synbio.2025.12.015openalex-snapshot
RECC: A Red/ET–CRISPR/Cas9-based system enabling genome mining of marine Pseudoalteromonas for novel natural products
inferred← citeshttps://doi.org/10.1016/j.tim.2009.12.007openalex-snapshot
Mycobacterium abscessus: a new player in the mycobacterial field
inferred← citeshttps://doi.org/10.1016/j.tube.2012.06.002openalex-snapshot
Genetic engineering of Mycobacterium tuberculosis: A review
inferred← citeshttps://doi.org/10.1016/j.tube.2013.09.007openalex-snapshot
Mycobacterium tuberculosis possesses an unusual tmRNA rescue system
inferred← citeshttps://doi.org/10.1016/j.tube.2016.03.005openalex-snapshot
Strategies of genome editing in mycobacteria: Achievements and challenges
inferred← citeshttps://doi.org/10.1016/j.tube.2016.07.011openalex-snapshot
Micrococcin P1 – A bactericidal thiopeptide active against Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1016/j.tube.2017.10.009openalex-snapshot
An IclR like protein from mycobacteria regulates leuCD operon and induces dormancy-like growth arrest in Mycobacterium smegmatis
inferred← citeshttps://doi.org/10.1016/j.tube.2018.05.007openalex-snapshot
LpqT improves mycobacteria survival in macrophages by inhibiting TLR2 mediated inflammatory cytokine expression and cell apoptosis
inferred← citeshttps://doi.org/10.1016/j.tube.2019.01.002openalex-snapshot
Mycobacteriophage ZoeJ: A broad host-range close relative of mycobacteriophage TM4
inferred← citeshttps://doi.org/10.1016/j.tube.2019.101890openalex-snapshot
N6-methylated adenine on the target sites of mamA from Mycobacterium bovis BCG enhances macrophage activation by CpG DNA in mice
inferred← citeshttps://doi.org/10.1016/j.tube.2019.101891openalex-snapshot
WQ-3810: A new fluoroquinolone with a high potential against fluoroquinolone-resistant Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1016/j.tube.2020.101956openalex-snapshot
Mycobacterium bovis BCG moreau is naturally deficient in homologous recombination
inferred← citeshttps://doi.org/10.1016/j.tube.2021.102105openalex-snapshot
Production of antibiotic resistance gene-free urease-deficient recombinant BCG that secretes antigenic protein applicable for practical use in tuberculosis vaccination
inferred← citeshttps://doi.org/10.1016/j.tube.2022.102292openalex-snapshot
Implementation of a mycobacterial CRISPRi platform in Mycobacterium abscessus and demonstration of the essentiality of ftsZMab
inferred← citeshttps://doi.org/10.1016/j.tube.2022.102295openalex-snapshot
Mab2780c, a TetV-like efflux pump, confers high-level spectinomycin resistance in mycobacterium abscessus
inferred← citeshttps://doi.org/10.1016/j.tube.2024.102477openalex-snapshot
Rv0495c regulates redox homeostasis in Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1016/j.tube.2024.102520openalex-snapshot
A simplified and efficient method for single-step, targeted gene deletion in mycobacteria
inferred← citeshttps://doi.org/10.1016/j.tube.2025.102703openalex-snapshot
Understanding the role of PezAT and MbcTA toxin-antitoxin systems in the pathophysiology of Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1016/j.vaccine.2016.03.089openalex-snapshot
The Ag85B protein of the BCG vaccine facilitates macrophage uptake but is dispensable for protection against aerosol Mycobacterium tuberculosis infection
inferred← citeshttps://doi.org/10.1016/j.virol.2012.09.026openalex-snapshot
On the nature of mycobacteriophage diversity and host preference
inferred← citeshttps://doi.org/10.1016/j.ymben.2019.10.003openalex-snapshot
A CRISPR/Cas9-based genome editing system for Rhodococcus ruber TH
inferred← citeshttps://doi.org/10.1016/j.ymben.2026.01.005openalex-snapshot
Novel routes for bioproduction of delta lactone aroma compounds
inferred← citeshttps://doi.org/10.1016/s1472-9792(08)70033-7openalex-snapshot
The many roads to essential genes
inferred← citeshttps://doi.org/10.1021/acschembio.5c00078openalex-snapshot
Enzymatic Pathway for Kupyaphore Degradation in Mycobacterium tuberculosis: Mechanism of Metal Homeostasis and Turnover
inferred← citeshttps://doi.org/10.1021/acsinfecdis.0c00361openalex-snapshot
Polysaccharide Succinylation Enhances the Intracellular Survival of Mycobacterium abscessus
inferred← citeshttps://doi.org/10.1021/acssynbio.6c00055openalex-snapshot
CRISPR/Cas9 Recombineering with Bacteriophage Recombinases Enables Efficient and Scarless Genome Editing in Cupriavidus necator H16
inferred← citeshttps://doi.org/10.1021/acssynbio.7b00416openalex-snapshot
Molecular Toolkit for Gene Expression Control and Genome Modification inRhodococcus opacusPD630
inferred← citeshttps://doi.org/10.1021/cb5007163openalex-snapshot
2-Carboxyquinoxalines Kill Mycobacterium tuberculosis through Noncovalent Inhibition of DprE1
inferred← citeshttps://doi.org/10.1038/msb.2012.66openalex-snapshot
Genome‐scale engineering for systems and synthetic biology
inferred← citeshttps://doi.org/10.1038/msb.2013.41openalex-snapshot
Generalized bacterial genome editing using mobile group II introns and Cre‐lox
inferred← citeshttps://doi.org/10.1038/nature22361openalex-snapshot
Deletion of a mycobacterial divisome factor collapses single-cell phenotypic heterogeneity
inferred← citeshttps://doi.org/10.1038/nchembio.1355openalex-snapshot
Mycobacterium tuberculosis nitrogen assimilation and host colonization require aspartate
inferred← citeshttps://doi.org/10.1038/ncomms13339openalex-snapshot
Chaperone addiction of toxin–antitoxin systems
inferred← citeshttps://doi.org/10.1038/ncomms16085openalex-snapshot
Reactogenicity to major tuberculosis antigens absent in BCG is linked to improved protection against Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1038/ncomms7267openalex-snapshot
Gene silencing by CRISPR interference in mycobacteria
inferred← citeshttps://doi.org/10.1038/ncomms9922openalex-snapshot
Mycobacteria modulate host epigenetic machinery by Rv1988 methylation of a non-tail arginine of histone H3
inferred← citeshttps://doi.org/10.1038/ni.3096openalex-snapshot
Mycobacterium tuberculosis suppresses innate immunity by coopting the host ubiquitin system
inferred← citeshttps://doi.org/10.1038/nmeth0507-455openalex-snapshot
Cloning and mutagenesis: tinkering with the order of things
inferred← citeshttps://doi.org/10.1038/nrmicro.2015.24openalex-snapshot
Synthetic biology to access and expand nature's chemical diversity
inferred← citeshttps://doi.org/10.1038/nrmicro2014openalex-snapshot
Recombineering mycobacteria and their phages
inferred← citeshttps://doi.org/10.1038/s41396-020-00800-1openalex-snapshot
Extracellular heme recycling and sharing across species by novel mycomembrane vesicles of a Gram-positive bacterium
inferred← citeshttps://doi.org/10.1038/s41423-018-0016-0openalex-snapshot
Mycobacterium tuberculosis Mce2E suppresses the macrophage innate immune response and promotes epithelial cell proliferation
inferred← citeshttps://doi.org/10.1038/s41467-019-08464-yopenalex-snapshot
The compound TB47 is highly bactericidal against Mycobacterium ulcerans in a Buruli ulcer mouse model
inferred← citeshttps://doi.org/10.1038/s41467-019-09955-8openalex-snapshot
A Mycobacterium tuberculosis surface protein recruits ubiquitin to trigger host xenophagy
inferred← citeshttps://doi.org/10.1038/s41467-020-14508-5openalex-snapshot
TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages
inferred← citeshttps://doi.org/10.1038/s41467-022-32085-7openalex-snapshot
Mycobacterial resistance to zinc poisoning requires assembly of P-ATPase-containing membrane metal efflux platforms
inferred← citeshttps://doi.org/10.1038/s41467-023-40264-3openalex-snapshot
MenT nucleotidyltransferase toxins extend tRNA acceptor stems and can be inhibited by asymmetrical antitoxin binding
inferred← citeshttps://doi.org/10.1038/s41467-024-45343-7openalex-snapshot
TcrXY is an acid-sensing two-component transcriptional regulator of Mycobacterium tuberculosis required for persistent infection
inferred← citeshttps://doi.org/10.1038/s41467-024-46449-8openalex-snapshot
Dependency on host vitamin B12 has shaped Mycobacterium tuberculosis Complex evolution
inferred← citeshttps://doi.org/10.1038/s41467-024-48506-8openalex-snapshot
Targeted protein degradation in mycobacteria uncovers antibacterial effects and potentiates antibiotic efficacy
inferred← citeshttps://doi.org/10.1038/s41467-024-52891-5openalex-snapshot
Mycobacterial HelD connects RNA polymerase recycling with transcription initiation
inferred← citeshttps://doi.org/10.1038/s41467-025-58455-5openalex-snapshot
A glycosylated lipooctapeptide promotes uptake and growth of Mycobacterium abscessus in the host
inferred← citeshttps://doi.org/10.1038/s41467-026-71460-6openalex-snapshot
Alpibectir–Ethionamide combination (AlpE) for the treatment of tuberculosis
inferred← citeshttps://doi.org/10.1038/s41467-026-72431-7openalex-snapshot
PE/PPE proteins contribute to Mycobacterium tuberculosis drug resistance
inferred← citeshttps://doi.org/10.1038/s41564-022-01313-7openalex-snapshot
The Mycobacterium tuberculosis protein O-phosphorylation landscape
inferred← citeshttps://doi.org/10.1038/s41587-019-0133-zopenalex-snapshot
Phage therapy’s latest makeover
inferred← citeshttps://doi.org/10.1038/s41587-026-03076-6openalex-snapshot
Genome editing of phylogenetically distinct bacteria using cross-species retron-mediated recombineering
inferred← citeshttps://doi.org/10.1038/s41589-020-00710-5openalex-snapshot
Characterizing the portability of phage-encoded homologous recombination proteins
inferred← citeshttps://doi.org/10.1038/s41589-022-01102-7openalex-snapshot
Evybactin is a DNA gyrase inhibitor that selectively kills Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1038/s41596-023-00856-1openalex-snapshot
Precise genome engineering in Pseudomonas using phage-encoded homologous recombination and the Cascade–Cas3 system
inferred← citeshttps://doi.org/10.1038/s41598-017-04894-0openalex-snapshot
HLA-E Presents Glycopeptides from the Mycobacterium tuberculosis Protein MPT32 to Human CD8+ T cells
inferred← citeshttps://doi.org/10.1038/s41598-017-08352-9openalex-snapshot
Recombineering using RecET in Corynebacterium glutamicum ATCC14067 via a self-excisable cassette
inferred← citeshttps://doi.org/10.1038/s41598-018-24380-5openalex-snapshot
HadD, a novel fatty acid synthase type II protein, is essential for alpha- and epoxy-mycolic acid biosynthesis and mycobacterial fitness
inferred← citeshttps://doi.org/10.1038/s41598-018-27687-5openalex-snapshot
A uniform cloning platform for mycobacterial genetics and protein production
inferred← citeshttps://doi.org/10.1038/s41598-018-37025-4openalex-snapshot
A new recombineering system for precise genome-editing in Shewanella oneidensis strain MR-1 using single-stranded oligonucleotides
inferred← citeshttps://doi.org/10.1038/s41598-018-37473-yopenalex-snapshot
Mycobacterium tuberculosis Rv0366c-Rv0367c encodes a non-canonical PezAT-like toxin-antitoxin pair
inferred← citeshttps://doi.org/10.1038/s41598-019-47312-3openalex-snapshot
Elucidating the functional role of Mycobacterium smegmatis recX in stress response
inferred← citeshttps://doi.org/10.1038/s41598-019-47905-yopenalex-snapshot
Genome-wide Phenotypic Profiling Identifies and Categorizes Genes Required for Mycobacterial Low Iron Fitness
inferred← citeshttps://doi.org/10.1038/s41598-020-71588-5openalex-snapshot
Identification of mycobacteriophage toxic genes reveals new features of mycobacterial physiology and morphology
inferred← citeshttps://doi.org/10.1038/s41598-022-08209-wopenalex-snapshot
A combination screening to identify enhancers of para-aminosalicylic acid against Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1038/s41598-026-43871-4openalex-snapshot
Regulatory mechanism of cholesterol transport via LtmA in Mycobacterium smegmatis
inferred← citeshttps://doi.org/10.1038/s42003-020-01318-0openalex-snapshot
Lung gene expression signatures suggest pathogenic links and molecular markers for pulmonary tuberculosis, adenocarcinoma and sarcoidosis
inferred← citeshttps://doi.org/10.1038/s42003-023-05059-8openalex-snapshot
ResR/McdR-regulated protein translation machinery contributes to drug resilience in Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1038/s42003-025-08051-6openalex-snapshot
A pH-dependent direct sulfhydrylation pathway is required for the pathogenesis of Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1038/s43586-020-00006-xopenalex-snapshot
Recombineering and MAGE
inferred← citeshttps://doi.org/10.1038/s44259-025-00107-1openalex-snapshot
Genome wide analyses reveal the role of mutator phenotypes in Mycobacterium tuberculosis drug resistance emergence
inferred← citeshttps://doi.org/10.1038/s44318-026-00715-1openalex-snapshot
Membrane-associated effluxosomes coordinate multi-metal resistance in Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1038/srep03527openalex-snapshot
KefB inhibits phagosomal acidification but its role is unrelated to M. tuberculosis survival in host
inferred← citeshttps://doi.org/10.1038/srep16918openalex-snapshot
Revisiting the role of phospholipases C in virulence and the lifecycle of Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1038/srep22922openalex-snapshot
Efficient and simple generation of multiple unmarked gene deletions in Mycobacterium smegmatis
inferred← citeshttps://doi.org/10.1038/srep28002openalex-snapshot
Mycobacterium tuberculosis Rv1152 is a Novel GntR Family Transcriptional Regulator Involved in Intrinsic Vancomycin Resistance and is a Potential Vancomycin Adjuvant Target
inferred← citeshttps://doi.org/10.1039/9781837072026-00175openalex-snapshot
Genetically Engineered Phages for Therapy
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