On the public citation graph

Fluorescence detection of protein clusters in individual cells and tissue sections by using toponome imaging system: sample preparation and measuring procedures

0 signed · 101 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1097-0320(20000901)41:1<55::aid-cyto8>3.0.co;2-aopenalex-snapshot
Optimization of cell permeabilization for multiparametric flow cytometric analysis with lectin staining
inferredcites →https://doi.org/10.1002/cyto.a.20203openalex-snapshot
Cytomics in characterizing Toponomes: Towards the biological code of the cell
inferredcites →https://doi.org/10.1002/cyto.a.20280openalex-snapshot
Automated interpretation of subcellular patterns in fluorescence microscope images for location proteomics
inferredcites →https://doi.org/10.1002/cyto.a.20281openalex-snapshot
A three‐symbol code for organized proteomes based on cyclical imaging of protein locations
inferredcites →https://doi.org/10.1007/3-540-36459-5_8openalex-snapshot
Topological Proteomics, Toponomics, MELK-Technology
inferredcites →https://doi.org/10.1007/s00026-004-0234-2openalex-snapshot
Poisson Numbers and Poisson Distributions in Subset Surprisology
inferredcites →https://doi.org/10.1007/s00026-008-0351-4openalex-snapshot
Two Theorems about Similarity Maps
inferredcites →https://doi.org/10.1016/s0092-8674(00)80922-8openalex-snapshot
The Cell as a Collection of Protein Machines: Preparing the Next Generation of Molecular Biologists
inferredcites →https://doi.org/10.1038/nature05282openalex-snapshot
Mesoangioblast stem cells ameliorate muscle function in dystrophic dogs
inferredcites →https://doi.org/10.1038/nature05406openalex-snapshot
A move in the right direction
inferredcites →https://doi.org/10.1038/nbt1006-1223openalex-snapshot
Putting proteins on the map
inferredcites →https://doi.org/10.1038/nbt1250openalex-snapshot
Analyzing proteome topology and function by automated multidimensional fluorescence microscopy
inferredcites →https://doi.org/10.1038/nmeth998openalex-snapshot
Toponome Imaging System (TIS): imaging the proteome with functional resolution
inferredcites →https://doi.org/10.1038/nprot.2006.1openalex-snapshot
Live-cell assay to detect antigen-specific CD4+ T-cell responses by CD154 expression
inferredcites →https://doi.org/10.1083/jcb.147.4.869openalex-snapshot
Skeletal Myogenic Progenitors Originating from Embryonic Dorsal Aorta Coexpress Endothelial and Myogenic Markers and Contribute to Postnatal Muscle Growth and Regeneration
inferredcites →https://doi.org/10.1117/12.237477openalex-snapshot
Fast regularization technique for expectation maximization algorithm for optical sectioning microscopy
inferredcites →https://doi.org/10.1142/5501openalex-snapshot
A Manual for Primary Human Cell Culture

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4601193openalex-extracted
Antibody Elution: Methods for Multi-Layer Immunohistochemical Analysis of Wholemount Preparations
inferred← citeshttps://doi.org/10.1002/bies.201100125openalex-snapshot
Visualizing and quantifying cell phenotype using soft X‐ray tomography
inferred← citeshttps://doi.org/10.1002/cyto.a.20466openalex-snapshot
Breaking the biological code
inferred← citeshttps://doi.org/10.1002/cyto.a.20617openalex-snapshot
Toward automation of flow data analysis
inferred← citeshttps://doi.org/10.1002/cyto.a.22671openalex-snapshot
Advances in toponomics drug discovery: Imaging cycler microscopy correctly predicts a therapy method of amyotrophic lateral sclerosis
inferred← citeshttps://doi.org/10.1002/cyto.a.24039openalex-snapshot
Life‐Saving Microscopy Method for Amyotrophic Lateral Sclerosis Patients
inferred← citeshttps://doi.org/10.1002/jmr.2326openalex-snapshot
Systematic, spatial imaging of large multimolecular assemblies and the emerging principles of supramolecular order in biological systems
inferred← citeshttps://doi.org/10.1002/pmic.200700742openalex-snapshot
Interlocking transcriptomics, proteomics and toponomics technologies for brain tissue analysis in murine hippocampus
inferred← citeshttps://doi.org/10.1002/smll.201503101openalex-snapshot
Eliminating Size-Associated Diffusion Constraints for Rapid On-Surface Bioassays with Nanoparticle Probes
inferred← citeshttps://doi.org/10.1007/978-1-0716-5268-8_12openalex-snapshot
NanoPlex: A Universal Strategy to Multiplex Immunostainings for Fluorescence Microscopy Using Secondary Nanobodies
inferred← citeshttps://doi.org/10.1007/978-1-4419-9863-7_631openalex-snapshot
Toponomics
inferred← citeshttps://doi.org/10.1007/978-1-4419-9863-7_634openalex-snapshot
Combinatorial Molecular Phenotypes (CMPs)
inferred← citeshttps://doi.org/10.1007/978-1-4419-9863-7_635openalex-snapshot
Toponome Analysis
inferred← citeshttps://doi.org/10.1007/978-1-4419-9863-7_636openalex-snapshot
TIS Robot
inferred← citeshttps://doi.org/10.1007/978-1-4939-9773-2_22openalex-snapshot
Multiplex Immunofluorescence Assays
inferred← citeshttps://doi.org/10.1007/978-3-030-38862-1_2openalex-snapshot
New Technologies to Image Tumors
inferred← citeshttps://doi.org/10.1007/978-3-662-49459-2_14openalex-snapshot
Neues aus der Forschung
inferred← citeshttps://doi.org/10.1007/978-3-662-61707-6_46openalex-snapshot
Toponomanalyse
inferred← citeshttps://doi.org/10.1007/978-90-481-2675-0_10openalex-snapshot
Cytomics and Predictive Medicine for Oncology
inferred← citeshttps://doi.org/10.1007/s00106-008-1703-4openalex-snapshot
Zytomik und prädiktive Medizin in der Onkologie
inferred← citeshttps://doi.org/10.1016/b978-0-323-90949-5.00009-7openalex-snapshot
Spatial mapping of the tumor immune microenvironment
inferred← citeshttps://doi.org/10.1016/j.bbamcr.2008.07.019openalex-snapshot
Functional architecture of the cell nucleus: Towards comprehensive toponome reference maps of apoptosis
inferred← citeshttps://doi.org/10.1016/j.ccr.2026.217603openalex-snapshot
Fluorescence-encoded barcodes for multiplexed detection and imaging: principles, strategies, and prospects
inferred← citeshttps://doi.org/10.1016/j.cis.2010.12.007openalex-snapshot
Understanding protein adsorption phenomena at solid surfaces
inferred← citeshttps://doi.org/10.1016/j.cyto.2017.06.008openalex-snapshot
CXCL16/CXCR6-mediated adhesion of human peripheral blood mononuclear cells to inflamed endothelium
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e26522openalex-snapshot
Antibody elution with 2-me/SDS solution: Uses for multi-layer immunohistochemical analysis of wholemount preparations of human colonic myenteric plexus
inferred← citeshttps://doi.org/10.1016/j.jbiotec.2010.01.009openalex-snapshot
An information theoretic thresholding method for detecting protein colocalizations in stacks of fluorescence images
inferred← citeshttps://doi.org/10.1016/j.jbiotec.2010.03.004openalex-snapshot
Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications
inferred← citeshttps://doi.org/10.1016/j.jbiotec.2010.03.009openalex-snapshot
On the origin of cell functions encoded in the toponome
inferred← citeshttps://doi.org/10.1016/j.jcmgh.2023.06.010openalex-snapshot
Types of Neurons in the Human Colonic Myenteric Plexus Identified by Multilayer Immunohistochemical Coding
inferred← citeshttps://doi.org/10.1016/j.jid.2016.09.036openalex-snapshot
GPVI and Thromboxane Receptor on Platelets Promote Proinflammatory Macrophage Phenotypes during Cutaneous Inflammation
inferred← citeshttps://doi.org/10.1016/j.molmed.2012.10.003openalex-snapshot
Toponome imaging system: multiplex biomarkers in oncology
inferred← citeshttps://doi.org/10.1016/j.nbt.2011.12.004openalex-snapshot
Next-generation biomarkers based on 100-parameter functional super-resolution microscopy TIS
inferred← citeshttps://doi.org/10.1016/j.prostaglandins.2017.06.002openalex-snapshot
CD200 selectively upregulates prostaglandin E2 and D2 synthesis in LPS-treated bone marrow-derived macrophages
inferred← citeshttps://doi.org/10.1021/acs.nanolett.7b02716openalex-snapshot
Rapid Sequential in Situ Multiplexing with DNA Exchange Imaging in Neuronal Cells and Tissues
inferred← citeshttps://doi.org/10.1021/pr100157popenalex-snapshot
Toponome Imaging System: In Situ Protein Network Mapping in Normal and Cancerous Colon from the Same Patient Reveals More than Five-Thousand Cancer Specific Protein Clusters and Their Subcellular Annotation by Using a Three Symbol Code
inferred← citeshttps://doi.org/10.1021/pr800944fopenalex-snapshot
Toponome Mapping in Prostate Cancer: Detection of 2000 Cell Surface Protein Clusters in a Single Tissue Section and Cell Type Specific Annotation by Using a Three Symbol Code
inferred← citeshttps://doi.org/10.1021/pr900106vopenalex-snapshot
Toponomics Analysis of Drug-Induced Changes in Arachidonic Acid-Dependent Signaling Pathways during Spinal Nociceptive Processing
inferred← citeshttps://doi.org/10.1038/labinvest.2015.2openalex-snapshot
Immunohistochemistry and mass spectrometry for highly multiplexed cellular molecular imaging
inferred← citeshttps://doi.org/10.1038/nm.3488openalex-snapshot
Multiplexed ion beam imaging of human breast tumors
inferred← citeshttps://doi.org/10.1038/s41392-021-00729-7openalex-snapshot
Technological advances in cancer immunity: from immunogenomics to single-cell analysis and artificial intelligence
inferred← citeshttps://doi.org/10.1038/s41467-024-53030-wopenalex-snapshot
NanoPlex: a universal strategy for fluorescence microscopy multiplexing using nanobodies with erasable signals
inferred← citeshttps://doi.org/10.1038/s41596-019-0206-yopenalex-snapshot
Qualifying antibodies for image-based immune profiling and multiplexed tissue imaging
inferred← citeshttps://doi.org/10.1038/s41597-019-0332-yopenalex-snapshot
Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer
inferred← citeshttps://doi.org/10.1038/s41598-025-99727-wopenalex-snapshot
High content imaging shows distinct macrophage and dendritic cell phenotypes for psoriasis and atopic dermatitis
inferred← citeshttps://doi.org/10.1038/srep19012openalex-snapshot
Large molecular systems landscape uncovers T cell trapping in human skin cancer
inferred← citeshttps://doi.org/10.1039/b814053gopenalex-snapshot
Surface-induced spreading phenomenon of protein clusters
inferred← citeshttps://doi.org/10.1039/b910653gopenalex-snapshot
Toponomics: studying protein–protein interactions and protein networks in intact tissue
inferred← citeshttps://doi.org/10.1039/d1an00472gopenalex-snapshot
Spatial proteomics for understanding the tissue microenvironment
inferred← citeshttps://doi.org/10.1073/pnas.1300136110openalex-snapshot
Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue
inferred← citeshttps://doi.org/10.1073/pnas.1319017111openalex-snapshot
Imaging cycler microscopy
inferred← citeshttps://doi.org/10.1074/jbc.m806410200openalex-snapshot
Sphingosine 1-Phosphate Modulates Spinal Nociceptive Processing
inferred← citeshttps://doi.org/10.1074/mcp.m800201-mcp200openalex-snapshot
Toponomics Analysis of Functional Interactions of the Ubiquitin Ligase PAM (Protein Associated with Myc) during Spinal Nociceptive Processing
inferred← citeshttps://doi.org/10.1080/14737159.2020.1743178openalex-snapshot
Advances in quantitative immunohistochemistry and their contribution to breast cancer
inferred← citeshttps://doi.org/10.1088/2399-6528/ac0ecaopenalex-snapshot
Advanced high dynamic range fluorescence microscopy with Poisson noise modeling and integrated edge-preserving denoising
inferred← citeshttps://doi.org/10.1093/bioinformatics/bts104openalex-snapshot
WHIDE—a web tool for visual data mining colocation patterns in multivariate bioimages
inferred← citeshttps://doi.org/10.1097/pai.0000000000000202openalex-snapshot
Ki-67 Membranous Staining: Biologically Relevant or an Artifact of Multiplexed Immunofluorescent Staining
inferred← citeshttps://doi.org/10.1109/isbi.2008.4541254openalex-snapshot
Flexible synapse detection in fluorescence micrographs by modeling human expert grading
inferred← citeshttps://doi.org/10.1109/tvcg.2011.217openalex-snapshot
Interactive, Graph-based Visual Analysis of High-dimensional, Multi-parameter Fluorescence Microscopy Data in Toponomics
inferred← citeshttps://doi.org/10.1111/bph.16261openalex-snapshot
Meloxicam treatment disrupts the regional structure of innate inflammation sites by targeting the pro‐inflammatory effects of prostanoids
inferred← citeshttps://doi.org/10.1111/his.12240openalex-snapshot
A novel, automated technology for multiplex biomarker imaging and application to breast cancer
inferred← citeshttps://doi.org/10.1111/j.1365-2818.2009.03184.xopenalex-snapshot
High‐aperture cryogenic light microscopy
inferred← citeshttps://doi.org/10.1111/j.1600-0560.2008.01106.xopenalex-snapshot
Toponomics: visualizing cellular protein networks in health and disease –‘A single picture is worth more than a thousand words!’
inferred← citeshttps://doi.org/10.1186/s12918-015-0170-2openalex-snapshot
Uncovering distinct protein-network topologies in heterogeneous cell populations
inferred← citeshttps://doi.org/10.1186/s13040-016-0088-2openalex-snapshot
Robust normalization protocols for multiplexed fluorescence bioimage analysis
inferred← citeshttps://doi.org/10.1364/oe.24.013023openalex-snapshot
Resolution enhancement for low-temperature scanning microscopy by cryo-immersion
inferred← citeshttps://doi.org/10.1371/journal.pone.0030894openalex-snapshot
RAMTaB: Robust Alignment of Multi-Tag Bioimages
inferred← citeshttps://doi.org/10.1371/journal.pone.0107105openalex-snapshot
Quantification of the Heterogeneity of Prognostic Cellular Biomarkers in Ewing Sarcoma Using Automated Image and Random Survival Forest Analysis
inferred← citeshttps://doi.org/10.1371/journal.pone.0128975openalex-snapshot
Automated Analysis and Classification of Histological Tissue Features by Multi-Dimensional Microscopic Molecular Profiling
inferred← citeshttps://doi.org/10.1371/journal.pone.0160591openalex-snapshot
Highly Multiplexed Imaging Uncovers Changes in Compositional Noise within Assembling Focal Adhesions
inferred← citeshttps://doi.org/10.1371/journal.pone.0229778openalex-snapshot
Human CD27+ memory B cells colonize a superficial follicular zone in the palatine tonsils with similarities to the spleen. A multicolor immunofluorescence study of lymphoid tissue
inferred← citeshttps://doi.org/10.15252/emmm.202216796openalex-snapshot
Eosinophil‐derived IL‐4 is necessary to establish the inflammatory structure in innate inflammation
inferred← citeshttps://doi.org/10.1586/14737159.2015.1028372openalex-snapshot
Extracting biomarkers of commitment to cancer development: potential role of vibrational spectroscopy in systems biology
inferred← citeshttps://doi.org/10.1586/14789450.5.2.361openalex-snapshot
Toponomics and neurotoponomics: a new way to medical systems biology
inferred← citeshttps://doi.org/10.18632/oncotarget.26585openalex-snapshot
Emerging approaches to study cell-cell interactions in tumor microenvironment
inferred← citeshttps://doi.org/10.2312/vcbm.20141186openalex-snapshot
Interactive Labeling of Toponome Data
inferred← citeshttps://doi.org/10.2312/vcbm/vcbm12/115-122openalex-snapshot
Visualization and Exploration of 3D Toponome Data
inferred← citeshttps://doi.org/10.29245/2578-2967/2018/1.1122openalex-snapshot
Novel Platforms of Multiplexed Immunofluorescence for Study of Paraffin Tumor Tissues
inferred← citeshttps://doi.org/10.3390/books978-3-03921-452-5openalex-snapshot
Towards New Promising Discoveries for Lung Cancer Patients: A Selection of Papers from the First Joint Meeting on Lung Cancer of the FHU OncoAge (Nice, France) and the MD Anderson Cancer Center (Houston, TX, USA)
inferred← citeshttps://doi.org/10.3390/cancers11020247openalex-snapshot
State-of-the-Art of Profiling Immune Contexture in the Era of Multiplexed Staining and Digital Analysis to Study Paraffin Tumor Tissues
inferred← citeshttps://doi.org/10.3390/ijms141121561openalex-snapshot
Engineering Lipid Bilayer Membranes for Protein Studies
inferred← citeshttps://doi.org/10.4208/eajam.280909.270410aopenalex-snapshot
A Comparative Method for Analysing Toponome Image Stacks
inferred← citeshttps://doi.org/10.4236/apm.2018.83017openalex-snapshot
A Platform for Parameter Unlimited Molecular Geometry Imaging Obviously Enabling Life Saving Measures in ALS
inferred← citeshttps://doi.org/10.82444/warw.33667612openalex-snapshot
Applying toponome imaging system for studying colon cancer
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.