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RNA sequence‐ and shape‐dependent recognition by proteins in the ribonucleoprotein particle

https://doi.org/10.1038/sj.embor.7400325

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/j.1460-2075.1985.tb03825.xopenalex-snapshot

Repetitive zinc‐binding domains in the protein transcription factor IIIA from Xenopus oocytes.

inferredcites →https://doi.org/10.1006/jmbi.1997.1177openalex-snapshot

A Xenopus zinc finger protein that specifically binds dsRNA and RNA-DNA hybrids

inferredcites →https://doi.org/10.1016/0092-8674(92)90601-8openalex-snapshot

RNA and DNA binding zinc fingers in Xenopus TFIIIA

inferredcites →https://doi.org/10.1016/0092-8674(93)90265-ropenalex-snapshot

RNA recognition: A family matter?

inferredcites →https://doi.org/10.1016/0959-440x(93)90195-qopenalex-snapshot

Zinc-finger proteins

inferredcites →https://doi.org/10.1016/j.chembiol.2004.06.009openalex-snapshot

The Binding Selectivity of ADAR2's dsRBMs Contributes to RNA-Editing Selectivity

inferredcites →https://doi.org/10.1016/j.jmb.2004.01.056openalex-snapshot

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inferredcites →https://doi.org/10.1016/s0092-8674(00)81517-2openalex-snapshot

Recognition of Polyadenylate RNA by the Poly(A)-Binding Protein

inferredcites →https://doi.org/10.1016/s0092-8674(02)00804-8openalex-snapshot

RNA Chaperones Exist and DEAD Box Proteins Get a Life

inferredcites →https://doi.org/10.1016/s0968-0004(00)01580-2openalex-snapshot

Proteins binding to duplexed RNA: one motif, multiple functions

inferredcites →https://doi.org/10.1016/s1047-8477(02)00544-0openalex-snapshot

New and old roles of the double-stranded RNA-binding domain

inferredcites →https://doi.org/10.1017/s1355838200000200openalex-snapshot

In vitro analysis of the binding of ADAR2 to the pre-mRNA encoding the GluR-B R/G site

inferredcites →https://doi.org/10.1021/ar030034mopenalex-snapshot

Structural Basis of Single-Stranded RNA Recognition

inferredcites →https://doi.org/10.1038/19242openalex-snapshot

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inferredcites →https://doi.org/10.1038/29234openalex-snapshot

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inferredcites →https://doi.org/10.1038/372432a0openalex-snapshot

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inferredcites →https://doi.org/10.1038/74101openalex-snapshot

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inferredcites →https://doi.org/10.1038/84131openalex-snapshot

Structural basis for recognition of AU-rich element RNA by the HuD protein.

inferredcites →https://doi.org/10.1038/nature02088openalex-snapshot

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inferredcites →https://doi.org/10.1038/nrm760openalex-snapshot

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inferredcites →https://doi.org/10.1038/nsmb738openalex-snapshot

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inferredcites →https://doi.org/10.1073/pnas.0402627101openalex-snapshot

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inferredcites →https://doi.org/10.1073/pnas.76.1.241openalex-snapshot

Isolation of a 7S particle from Xenopus laevis oocytes: a 5S RNA-protein complex.

inferredcites →https://doi.org/10.1073/pnas.89.22.10979openalex-snapshot

A conserved double-stranded RNA-binding domain.

inferredcites →https://doi.org/10.1093/emboj/16.18.5764openalex-snapshot

Structural basis of the RNA‐binding specificity of human U1A protein

inferredcites →https://doi.org/10.1093/emboj/17.24.7505openalex-snapshot

Molecular basis of double‐stranded RNA‐protein interactions: structure of a dsRNA‐binding domain complexed with dsRNA

inferredcites →https://doi.org/10.1093/emboj/19.24.6870openalex-snapshot

Molecular basis of sequence‐specific recognition of pre‐ribosomal RNA by nucleolin

inferredcites →https://doi.org/10.1093/emboj/19.5.997openalex-snapshot

RNA recognition by a Staufen double‐stranded RNA‐binding domain

inferredcites →https://doi.org/10.1093/emboj/cdf538openalex-snapshot

Large‐scale induced fit recognition of an m7GpppG cap analogue by the human nuclear cap‐binding complex

inferredcites →https://doi.org/10.1093/nar/30.9.1991openalex-snapshot

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inferredcites →https://doi.org/10.1093/nar/gkh088openalex-snapshot

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inferredcites →https://doi.org/10.1096/fj.02-0958revopenalex-snapshot

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inferredcites →https://doi.org/10.1101/gad.13.9.1102openalex-snapshot

Crystal structure of the two-RRM domain of hnRNP A1 (UP1) complexed with single-stranded telomeric DNA

inferredcites →https://doi.org/10.1126/science.1058040openalex-snapshot

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inferredcites →https://doi.org/10.1126/science.2028256openalex-snapshot

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inferredcites →https://doi.org/10.1146/annurev.biophys.29.1.183openalex-snapshot

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inferred← citeshttps://doi.org/10.1016/j.jbc.2025.110933openalex-snapshot

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inferred← citeshttps://doi.org/10.1016/j.jmb.2005.06.032openalex-snapshot

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inferred← citeshttps://doi.org/10.1016/j.jmb.2006.05.001openalex-snapshot

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inferred← citeshttps://doi.org/10.1016/j.jprot.2015.04.031openalex-snapshot

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inferred← citeshttps://doi.org/10.1093/nar/gku446openalex-snapshot

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inferred← citeshttps://doi.org/10.1098/rsob.200328openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2024.08.20.608150openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/gad.184945.111openalex-snapshot

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inferred← citeshttps://doi.org/10.1109/eitc.2005.1544341openalex-snapshot

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inferred← citeshttps://doi.org/10.1111/cpr.12724openalex-snapshot

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inferred← citeshttps://doi.org/10.1111/j.1742-4658.2007.06155.xopenalex-snapshot

A knowledge‐based potential function predicts the specificity and relative binding energy of RNA‐binding proteins

inferred← citeshttps://doi.org/10.1111/j.1742-4658.2008.06411.xopenalex-snapshot

Structure and function of KH domains

inferred← citeshttps://doi.org/10.1111/mmi.13090openalex-snapshot

Association of UBP 1 to ribonucleoprotein complexes is regulated by interaction with the trypanosome ortholog of the human multifunctional P 32 protein

inferred← citeshttps://doi.org/10.1126/science.1111443openalex-snapshot

From Birth to Death: The Complex Lives of Eukaryotic mRNAs

inferred← citeshttps://doi.org/10.1128/jvi.01451-17openalex-snapshot

Human Adenovirus Core Protein V Is Targeted by the Host SUMOylation Machinery To Limit Essential Viral Functions

inferred← citeshttps://doi.org/10.1128/mbio.00431-22openalex-snapshot

Emergence of Compensatory Mutations Reveals the Importance of Electrostatic Interactions between HIV-1 Integrase and Genomic RNA

inferred← citeshttps://doi.org/10.1128/mcb.01115-08openalex-snapshot

The KREPA3 Zinc Finger Motifs and OB-Fold Domain Are Essential for RNA Editing and Survival of Trypanosoma brucei

inferred← citeshttps://doi.org/10.1134/s0006350917060070openalex-snapshot

The Physical and Geometric Properties of Human Transposon Stem–Loop Structures under Natural Selection

inferred← citeshttps://doi.org/10.1134/s0026893324060062openalex-snapshot

Elucidating the Effects of Aromatic Mutations on the RNA Binding Efficacy of CELF2 Protein

inferred← citeshttps://doi.org/10.1155/2010/485051openalex-snapshot

Archaea Signal Recognition Particle Shows the Way

inferred← citeshttps://doi.org/10.11606/t.41.2022.tde-02082022-190632openalex-snapshot

A função de proteínas associadas à Esclerose Lateral Amiotrófica em diferentes contextos celulares

inferred← citeshttps://doi.org/10.1177/2472555220958387openalex-snapshot

AlphaScreen Identifies MSUT2 Inhibitors for Tauopathy-Targeting Therapeutic Discovery

inferred← citeshttps://doi.org/10.1186/1471-2164-13-220openalex-snapshot

Widespread uncoupling between transcriptome and translatome variations after a stimulus in mammalian cells

inferred← citeshttps://doi.org/10.1186/1472-6831-9-21openalex-snapshot

Association of a genetic polymorphism (-44 C/G SNP) in the human DEFB1 gene with expression and inducibility of multiple β-defensins in gingival keratinocytes

inferred← citeshttps://doi.org/10.1186/1756-0500-7-83openalex-snapshot

Sequence dependent variations in RNA duplex are related to non-canonical hydrogen bond interactions in dinucleotide steps

inferred← citeshttps://doi.org/10.1186/gb-2005-6-13-r111openalex-snapshot

The undertranslated transcriptome reveals widespread translational silencing by alternative 5' transcript leaders

inferred← citeshttps://doi.org/10.1186/s12864-015-1328-4openalex-snapshot

Comprehensive analysis of CCCH-type zinc finger family genes facilitates functional gene discovery and reflects recent allopolyploidization event in tetraploid switchgrass

inferred← citeshttps://doi.org/10.1186/s12864-019-5550-3openalex-snapshot

Cardiomyogenic differentiation is fine-tuned by differential mRNA association with polysomes

inferred← citeshttps://doi.org/10.1186/s12864-026-12657-3openalex-snapshot

PRIME-BSPre: a genome-wide protein-RNA binding sites prediction method based on templates

inferred← citeshttps://doi.org/10.1186/s12964-025-02102-5openalex-snapshot

Functions of the Muscleblind-like protein family and their role in disease

inferred← citeshttps://doi.org/10.1186/s13059-023-02913-0openalex-snapshot

Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

inferred← citeshttps://doi.org/10.1196/annals.1359.019openalex-snapshot

Development of Resistance to RNAi in Mammalian Cells

inferred← citeshttps://doi.org/10.1201/9781498713368-11openalex-snapshot

RNA-Binding Proteins in Fungi and Their Role in mRNA Localization

inferred← citeshttps://doi.org/10.1201/9781498713368-15openalex-snapshot

From Structure to Function of RNA Binding Domains

inferred← citeshttps://doi.org/10.1261/rna.062182.117openalex-snapshot

Conservation of tRNA mimicry in the 5′-untranslated region of distinct HIV-1 subtypes

inferred← citeshttps://doi.org/10.1261/rna.080215.124openalex-snapshot

Evaluation of novel computational methods to identify RNA-binding protein footprints from structural data

inferred← citeshttps://doi.org/10.1261/rna.2220705openalex-snapshot

Prp8 protein: At the heart of the spliceosome

inferred← citeshttps://doi.org/10.1261/rna.7276805openalex-snapshot

A novel RNA pentaloop fold involved in targeting ADAR2

inferred← citeshttps://doi.org/10.1371/journal.pone.0047497openalex-snapshot

Inhibition of Pre-mRNA Splicing by a Synthetic Blom7α-Interacting Small RNA

inferred← citeshttps://doi.org/10.1371/journal.pone.0180678openalex-snapshot

RNA secondary structure and nucleotide composition of the conserved hallmark sequence of Leishmania SIDER2 retroposons are essential for endonucleolytic cleavage and mRNA degradation

inferred← citeshttps://doi.org/10.1371/journal.ppat.1002441openalex-snapshot

Fungal Virulence and Development Is Regulated by Alternative Pre-mRNA 3′End Processing in Magnaporthe oryzae

inferred← citeshttps://doi.org/10.1517/14728222.9.6.1189openalex-snapshot

Individualised cancer therapeutics: dream or reality?

inferred← citeshttps://doi.org/10.15252/embr.202357215openalex-snapshot

Dicer structure and function: conserved and evolving features

inferred← citeshttps://doi.org/10.2139/ssrn.4889490openalex-snapshot

Prime-Bspre: A Genome-Wide Protein-Rna Binding Sites Prediction Method Based on Templates

inferred← citeshttps://doi.org/10.3233/jad-132300openalex-snapshot

Adenosine Triphosphate (ATP) Reduces Amyloid-β Protein Misfolding in vitro

inferred← citeshttps://doi.org/10.33774/chemrxiv-2021-05zhjopenalex-snapshot

Structural requirements for photo-induced RNA-protein cross-linking

inferred← citeshttps://doi.org/10.3390/genes17080973openalex-snapshot

RNA Modifications Modulate Biomolecular Condensates in Stress and Disease

inferred← citeshttps://doi.org/10.3390/ht8040019openalex-snapshot

Investigation of RNA Editing Sites within Bound Regions of RNA-Binding Proteins

inferred← citeshttps://doi.org/10.3390/ijms16036076openalex-snapshot

Conformational Analysis of Misfolded Protein Aggregation by FRET and Live-Cell Imaging Techniques

inferred← citeshttps://doi.org/10.3390/ijms17122097openalex-snapshot

Differential Impacts of Alternative Splicing Networks on Apoptosis

inferred← citeshttps://doi.org/10.3390/ijms23115923openalex-snapshot

Ribonomics Approaches to Identify RBPome in Plants and Other Eukaryotes: Current Progress and Future Prospects

inferred← citeshttps://doi.org/10.3390/v12090947openalex-snapshot

Structure and Sequence Determinants Governing the Interactions of RNAs with Influenza A Virus Non-Structural Protein NS1

inferred← citeshttps://doi.org/10.3839/jabc.2015.032openalex-snapshot

RNA Binding Proteins and its Regulation of Gene Expression

inferred← citeshttps://doi.org/10.3929/ethz-a-005164730openalex-snapshot

Structural and functional characterization of proteins involved in RNA-mediated gene silencing

inferred← citeshttps://doi.org/10.4161/15476286.2014.972856openalex-snapshot

Functions of double-stranded RNA-binding domains in nucleocytoplasmic transport

inferred← citeshttps://doi.org/10.48550/arxiv.2102.00925openalex-snapshot

Neural representation and generation for RNA secondary structures

inferred← citeshttps://doi.org/10.6084/m9.figshare.22649161openalex-snapshot

Additional file 1 of Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

inferred← citeshttps://doi.org/10.6084/m9.figshare.22649185openalex-snapshot

Additional file 7 of Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

inferred← citeshttps://doi.org/10.70675/233e20e9zc3edz4785z8d11z871e7846fef9openalex-snapshot

Towards the in silico reconstruction of protein interaction networks : identification of DNA- and RNA-protein interfaces, and construction of a database of multiple interactions of proteins

inferred← citeshttps://doi.org/10.70675/7fc623a8z4c1dz4aefz8460zf6be1886d753openalex-snapshot

Discovery of the role of protein-RNA interactions in protein multifunctionality and cellular complexity

inferred← citeshttps://doi.org/10.70675/8b88f11ez1daaz4387z9531z0dbc55b3ec14openalex-snapshot

Caractérisation moléculaire du domaine de liaison à l'ARN de la protéine non-structurale 1 (NS1) des virus influenza A lors de l'interaction avec un ARN double-brin de haute affinité contenant des séquences sélectionnées in vitro

inferred← citeshttps://doi.org/10.70675/cbb164cfz48acz4848zbf5bzed9d16dc6f7aopenalex-snapshot

Role of Ro60/RNYs complex in lipid-laden macrophages

inferred← citeshttps://doi.org/10.7717/peerj.9328openalex-snapshot

Genome-wide analysis of the C3H zinc finger family reveals its functions in salt stress responses of Pyrus betulaefolia

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