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Genomic characterization of the Atlantic cod sex-locus
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/0471250953.bi1110s43openalex-snapshot
From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
inferredcites →https://doi.org/10.1002/mrd.22170openalex-snapshot
Divergent and sex‐dimorphic expression of the paralogs of the Sox9‐Amh‐Cyp19a1 regulatory cascade in developing and adult atlantic cod (Gadus morhua L.)
inferredcites →https://doi.org/10.1006/jmsc.1996.0103openalex-snapshot
Skewed sex ratios in spawning shoals of Atlantic cod (Gadus morhua)
inferredcites →https://doi.org/10.1007/s10641-011-9853-8openalex-snapshot
Turnover of sex chromosomes and speciation in fishes
inferredcites →https://doi.org/10.1016/j.aquaculture.2010.12.003openalex-snapshot
The production of hermaphrodites of Atlantic cod (Gadus morhua) by masculinization with orally administered 17-α-methyltestosterone, and subsequent production of all-female cod populations
inferredcites →https://doi.org/10.1016/j.aquaculture.2011.10.039openalex-snapshot
Ovarian development and sex ratio of gynogenetic Atlantic cod (Gadus morhua)
inferredcites →https://doi.org/10.1016/j.cell.2015.10.071openalex-snapshot
Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish
inferredcites →https://doi.org/10.1016/j.cub.2012.05.045openalex-snapshot
An Immune-Related Gene Evolved into the Master Sex-Determining Gene in Rainbow Trout, Oncorhynchus mykiss
inferredcites →https://doi.org/10.1016/j.gene.2012.06.021openalex-snapshot
Sex dimorphic expression of five dmrt genes identified in the Atlantic cod genome. The fish-specific dmrt2b diverged from dmrt2a before the fish whole-genome duplication
inferredcites →https://doi.org/10.1016/j.redox.2015.06.003openalex-snapshot
Diet affects the redox system in developing Atlantic cod (Gadus morhua) larvae
inferredcites →https://doi.org/10.1016/j.ygcen.2009.05.004openalex-snapshot
Control of puberty in farmed fish
inferredcites →https://doi.org/10.1038/nature06178openalex-snapshot
Turnover of sex chromosomes induced by sexual conflict
inferredcites →https://doi.org/10.1038/nature08441openalex-snapshot
A role for a neo-sex chromosome in stickleback speciation
inferredcites →https://doi.org/10.1038/nature10342openalex-snapshot
The genome sequence of Atlantic cod reveals a unique immune system
inferredcites →https://doi.org/10.1038/nature751openalex-snapshot
DMY is a Y-specific DM-domain gene required for male development in the medaka fish
inferredcites →https://doi.org/10.1038/ncomms5157openalex-snapshot
Co-option of Sox3 as the male-determining factor on the Y chromosome in the fish Oryzias dancena
inferredcites →https://doi.org/10.1038/ng.2890openalex-snapshot
Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/nrg2986openalex-snapshot
Genotype and SNP calling from next-generation sequencing data
inferredcites →https://doi.org/10.1073/pnas.1018392109openalex-snapshot
A Y-linked anti-Müllerian hormone duplication takes over a critical role in sex determination
inferredcites →https://doi.org/10.1073/pnas.182314699openalex-snapshot
A duplicated copy of DMRT1 in the sex-determining region of the Y chromosome of the medaka, Oryzias latipes
inferredcites →https://doi.org/10.1080/20548923.2016.1160594openalex-snapshot
Preferential amplification of repetitive DNA during whole genome sequencing library creation from historic samples
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1093/bib/bbs017openalex-snapshot
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr026openalex-snapshot
Quality control and preprocessing of metagenomic datasets
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/gkv1070openalex-snapshot
KEGG as a reference resource for gene and protein annotation
inferredcites →https://doi.org/10.1098/rsos.150199openalex-snapshot
The globalization of naval provisioning: ancient DNA and stable isotope analyses of stored cod from the wreck of the Mary Rose, AD 1545
inferredcites →https://doi.org/10.1101/060921openalex-snapshot
An improved genome assembly uncovers prolific tandem repeats in Atlantic cod
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.6743907openalex-snapshot
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
inferredcites →https://doi.org/10.1111/jfb.12579openalex-snapshot
Sexual size dimorphism in three North Sea gadoids
inferredcites →https://doi.org/10.1111/mec.13594openalex-snapshot
Genomic characterization of sex‐identification markers inSebastes carnatusandSebastes chrysomelasrockfishes
inferredcites →https://doi.org/10.1139/f05-270openalex-snapshot
Systematic bias in estimates of reproductive potential of an Atlantic cod (Gadus morhua) stock: implications for stockrecruit theory and management
inferredcites →https://doi.org/10.1159/000100030openalex-snapshot
Governing Sex Determination in Fish: Regulatory Putsches and Ephemeral Dictators
inferredcites →https://doi.org/10.1159/000223079openalex-snapshot
Evolutionary Perspectives on Hermaphroditism in Fishes
inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
inferredcites →https://doi.org/10.1186/1471-2105-13-238openalex-snapshot
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot
Automated generation of heuristics for biological sequence comparison
inferredcites →https://doi.org/10.1186/1471-2164-11-191openalex-snapshot
Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua)
inferredcites →https://doi.org/10.1186/1471-2164-13-443openalex-snapshot
Maternal 3’UTRs: from egg to onset of zygotic transcription in Atlantic cod
inferredcites →https://doi.org/10.1186/gb-2010-11-4-205openalex-snapshot
Are homologies in vertebrate sex determination due to shared ancestry or to limited options?
inferredcites →https://doi.org/10.1371/journal.pgen.1000391openalex-snapshot
Turnover of Sex Chromosomes in the Stickleback Fishes (Gasterosteidae)
inferredcites →https://doi.org/10.1371/journal.pgen.1002798openalex-snapshot
A Trans-Species Missense SNP in Amhr2 Is Associated with Sex Determination in the Tiger Pufferfish, Takifugu rubripes (Fugu)
inferredcites →https://doi.org/10.1371/journal.pgen.1005678openalex-snapshot
A Tandem Duplicate of Anti-Müllerian Hormone with a Missense SNP on the Y Chromosome Is Essential for Male Sex Determination in Nile Tilapia, Oreochromis niloticus
inferredcites →https://doi.org/10.1371/journal.pone.0037135openalex-snapshot
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
inferredcites →https://doi.org/10.1371/journal.pone.0089676openalex-snapshot
Palindromic Sequence Artifacts Generated during Next Generation Sequencing Library Preparation from Historic and Ancient DNA
inferredcites →https://doi.org/10.1530/jme-13-0187openalex-snapshot
Sexually dimorphic transcription of estrogen receptors in cod gonads throughout a reproductive cycle
inferredcites →https://doi.org/10.1534/genetics.107.075598openalex-snapshot
Evidence for Different Origins of Sex Chromosomes in Closely Related Oryzias Fishes: Substitution of the Master Sex-Determining Gene
inferredcites →https://doi.org/10.1534/genetics.111.137497openalex-snapshot
Tracing the Emergence of a Novel Sex-Determining Gene in Medaka, Oryzias luzonensis
inferredcites →https://doi.org/10.1534/genetics.114.161158openalex-snapshot
Genetics of Sexual Development: An Evolutionary Playground for Fish
inferredcites →https://doi.org/10.3389/fgene.2014.00340openalex-snapshot
Genetic architecture of sex determination in fish: applications to sex ratio control in aquaculture
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1111/jfb.70070zenodo-depositor-declared
Prematuration differences in male and female Atlantic cod: Investigating sex ratio, length and ecotype disparities in juveniles
inferred← citeshttps://doi.org/10.1002/2211-5463.13199openalex-snapshot
Identification of differentially expressed genes in diabetic kidney disease by RNA‐Seq analysis of venous blood platelets
inferred← citeshttps://doi.org/10.1002/9781119127291.ch37openalex-snapshot
Sex Determination, Differentiation, and Control in Atlantic Cod
inferred← citeshttps://doi.org/10.1002/ece3.70512openalex-snapshot
Genomic Signatures of Domestication in European Seabass (Dicentrarchus labrax L.) Reveal a Potential Role for Epigenetic Regulation in Adaptation to Captivity
inferred← citeshttps://doi.org/10.1002/ece3.7878openalex-snapshot
Low‐coverage whole‐genome sequencing reveals molecular markers for spawning season and sex identification in Gulf of Maine Atlantic cod (Gadus morhua, Linnaeus 1758)
inferred← citeshttps://doi.org/10.1016/j.aqrep.2020.100334openalex-snapshot
The influence of the water pH on the sex ratio of tambaqui colossoma macropomum (CUVIER, 1818)
inferred← citeshttps://doi.org/10.1016/j.aqrep.2020.100552openalex-snapshot
A PCR-based genetic sex identification method in spotted mandarin fish (Siniperca scherzeri) and big eye mandarin fish (Siniperca kneri)
inferred← citeshttps://doi.org/10.1016/j.aqrep.2023.101593openalex-snapshot
Development and validation of a PCR-RFLP / TaqMan MGB probe method for rapid sex identification of largemouth bass (Micropterus salmoides)
inferred← citeshttps://doi.org/10.1016/j.aqrep.2025.102900openalex-snapshot
A sex-specific molecular marker in Mulloway (Argyrosomus japonicus)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2020.735495openalex-snapshot
Screening and characterization of sex-specific markers developed by a simple NGS method in mandarin fish (Siniperca chuatsi)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2021.736579openalex-snapshot
A simple PCR-based genetic sex identification method in the blotched snakehead (Channa maculata) developed by high-throughput sequencing
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2021.737389openalex-snapshot
Genome-wide association study identifies genomic loci of sex determination, gonadal weight and gonadosomatic index traits in Takifugu bimaculatus
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738833openalex-snapshot
Screening and characterization of X chromosome-specific markers in mandarin fish (Siniperca chuatsi)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.739147openalex-snapshot
Screening and characterization of sex-specific markers by NGS sequencing in Spinibarbus hollandi with implication of XY sex determination system
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.740605openalex-snapshot
Identification of sex-specific DNA markers in the army fish (Spinibarbus hollandi) by whole genome re-sequencing method
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.741449openalex-snapshot
Sex-linked DNA marker screening and characterization in albino northern snakehead (Channa argus var.) via third-generation sequencing and pool resequencing
inferred← citeshttps://doi.org/10.1016/j.biocon.2024.110831openalex-snapshot
Conservation benefits of marine reserves depend on knowledge integration of genotypic and phenotypic diversity
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2023.125908openalex-snapshot
Characterization of the male-specific region containing the candidate sex-determining gene in Amur catfish (Silurus asotus) using third-generation- and pool-sequencing data
inferred← citeshttps://doi.org/10.1016/j.ygeno.2025.111053openalex-snapshot
Validation of male-specific markers confirmed an XY/XX-type sex determination system in Chinese dark sleeper (Odontobutis sinensis)
inferred← citeshttps://doi.org/10.1038/s41598-018-36748-8openalex-snapshot
Characterization of a male specific region containing a candidate sex determining gene in Atlantic cod
inferred← citeshttps://doi.org/10.1038/s41598-019-50978-4openalex-snapshot
Improvement of the Pacific bluefin tuna (Thunnus orientalis) reference genome and development of male-specific DNA markers
inferred← citeshttps://doi.org/10.1038/s41598-024-69782-wopenalex-snapshot
Genomic architecture and population structure of Boreogadus saida from Canadian waters
inferred← citeshttps://doi.org/10.1073/pnas.1710186114openalex-snapshot
Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany
inferred← citeshttps://doi.org/10.1093/icesjms/fsac220openalex-snapshot
Mixed origin of juvenile Atlantic cod ( Gadus morhua ) along the Swedish west coast
inferred← citeshttps://doi.org/10.1101/2021.06.15.448492openalex-snapshot
Prediction of the sex-determination gene in tunas ( Thunnus fishes)
inferred← citeshttps://doi.org/10.1101/2022.06.03.494672openalex-snapshot
Mixed origin of juvenile Atlantic cod ( Gadus morhua ) along the Swedish west coast
inferred← citeshttps://doi.org/10.1101/2024.06.28.597535openalex-snapshot
Population divergence manifested by genomic rearrangements in a keystone Arctic species with high gene flow
inferred← citeshttps://doi.org/10.1101/362376openalex-snapshot
A zinc knuckle gene on the Y chromosome ( zkY ) determines sex in Atlantic cod ( Gadus morhua )
inferred← citeshttps://doi.org/10.1101/834556openalex-snapshot
Multiple evidences suggest sox2 as the main driver of a young and complex sex determining ZW/ZZ system in turbot ( Scophthalmus maximus )
inferred← citeshttps://doi.org/10.1111/1365-2656.13989openalex-snapshot
Movement diversity and partial sympatry of coastal and Northeast Arctic cod ecotypes at high latitudes
inferred← citeshttps://doi.org/10.1111/1755-0998.13360openalex-snapshot
RADSex: A computational workflow to study sex determination using restriction site‐associated DNA sequencing data
inferred← citeshttps://doi.org/10.1111/1755-0998.13598openalex-snapshot
Fishing for DNA? Designing baits for population genetics in target enrichment experiments: Guidelines, considerations and the new tool supeRbaits
inferred← citeshttps://doi.org/10.1111/jeb.13725openalex-snapshot
Genomic landscape of reproductive isolation in Lucania killifish: The role of sex loci and salinity
inferred← citeshttps://doi.org/10.1111/jeb.14076openalex-snapshot
Diversity of sex chromosomes in Sulawesian medaka fishes
inferred← citeshttps://doi.org/10.1111/mec.15010openalex-snapshot
Disentangling structural genomic and behavioural barriers in a sea of connectivity
inferred← citeshttps://doi.org/10.1155/2021/7226353openalex-snapshot
Prediction of the Sex-Associated Genomic Region in Tunas (Thunnus Fishes)
inferred← citeshttps://doi.org/10.1186/s12864-024-10884-0openalex-snapshot
Identification of sex-specific markers using genome re-sequencing in the blunt snout bream (Megalobrama amblycephala)
inferred← citeshttps://doi.org/10.1186/s12915-022-01489-8openalex-snapshot
Ancestral reconstruction reveals catalytic inactivation of activation-induced cytidine deaminase concomitant with cold water adaption in the Gadiformes bony fish
inferred← citeshttps://doi.org/10.1371/journal.pone.0218127openalex-snapshot
Assessing SNP-markers to study population mixing and ecological adaptation in Baltic cod
inferred← citeshttps://doi.org/10.1534/g3.119.400972openalex-snapshot
Network Analysis of Linkage Disequilibrium Reveals Genome Architecture in Chum Salmon
inferred← citeshttps://doi.org/10.2331/suisan.wa2406openalex-snapshot
Identification of the sex-determining gene in fugu through genome-wide analyses
inferred← citeshttps://doi.org/10.3354/meps15039openalex-snapshot
Precise positioning of Atlantic cod reveals size-dependent preferences for substrate and bathymetric terrain
inferred← citeshttps://doi.org/10.3354/meps15087openalex-snapshot
Intraspecific diversity in Atlantic cod Gadus morhua spatial ecology within subarctic fjords during the foraging season
inferred← citeshttps://doi.org/10.3390/ijms25020819openalex-snapshot
Identification of Sex-Specific Markers and Candidate Genes Using WGS Sequencing Reveals a ZW-Type Sex-Determination System in the Chinese Soft-Shell Turtle (Pelodiscus sinensis)
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