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Herb-target interaction network analysis helps to disclose molecular mechanism of traditional Chinese medicine

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Comparative Protein Structure Modeling Using MODELLER
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Comparative Protein Structure Modeling Using Modeller
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AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
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Virtual screening of the SAMPL4 blinded HIV integrase inhibitors dataset
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Potential synergism and inhibitors to multiple target enzymes of Xuefu Zhuyu Decoction in cardiac disease therapeutics: A computational approach
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Discovery of a small-molecule antiviral targeting the HIV-1 matrix protein
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Effector Kinase Coupling Enables High-Throughput Screens for Direct HIV-1 Nef Antagonists with Antiretroviral Activity
inferredcites →https://doi.org/10.1016/j.jep.2015.01.010openalex-snapshot
Herb–drug interaction between an anti-HIV Chinese herbal SH formula and atazanavir in vitro and in vivo
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Suppression of HIV-1 Protease Inhibitor Resistance by Phosphonate-mediated Solvent Anchoring
inferredcites →https://doi.org/10.1016/j.jmb.2010.02.019openalex-snapshot
Visualizing the Molecular Interactions of a Nucleotide Analog, GS-9148, with HIV-1 Reverse Transcriptase–DNA Complex
inferredcites →https://doi.org/10.1016/j.jmb.2013.02.022openalex-snapshot
Discovery and Structural Characterization of a New Inhibitor Series of HIV-1 Nucleocapsid Function: NMR Solution Structure Determination of a Ternary Complex Involving a 2:1 Inhibitor/NC Stoichiometry
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NMR Structure of the HIV-1 Regulatory Protein VPR
inferredcites →https://doi.org/10.1016/s0092-8674(00)80205-6openalex-snapshot
Core Structure of gp41 from the HIV Envelope Glycoprotein
inferredcites →https://doi.org/10.1016/s0092-8674(00)81276-3openalex-snapshot
Crystal Structure of the Conserved Core of HIV-1 Nef Complexed with a Src Family SH3 Domain
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HIV-1 Entry Inhibitors in the Side Pocket
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The crystal structure of HIV-1 Nef protein bound to the Fyn kinase SH3 domain suggests a role for this complex in altered T cell receptor signaling
inferredcites →https://doi.org/10.1021/bi060927xopenalex-snapshot
Implications for Viral Capsid Assembly from Crystal Structures of HIV-1 Gag1-278 and CAN133-278,
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Traditional Chinese Medicine Database and Application on the Web
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Extensive Consensus Docking Evaluation for Ligand Pose Prediction and Virtual Screening Studies
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Computation of Octanol−Water Partition Coefficients by Guiding an Additive Model with Knowledge
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Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
inferredcites →https://doi.org/10.1021/jm051256oopenalex-snapshot
Extra Precision Glide: Docking and Scoring Incorporating a Model of Hydrophobic Enclosure for Protein−Ligand Complexes
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Treatment of Human Immunodeficiency Virus Infection with Saquinavir, Zidovudine, and Zalcitabine
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Protein–protein interaction inhibition (2P2I) combining high throughput and virtual screening: Application to the HIV-1 Nef protein
inferredcites →https://doi.org/10.1073/pnas.1302823110openalex-snapshot
Protein structural ensembles are revealed by redefining X-ray electron density noise
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Vipirinin, a Coumarin-based HIV-1 Vpr Inhibitor, Interacts with a Hydrophobic Region of VPR
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HIV-1 Antiretroviral Drug Therapy
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Structure of the CCR5 Chemokine Receptor–HIV Entry Inhibitor Maraviroc Complex
inferredcites →https://doi.org/10.1128/aac.01711-12openalex-snapshot
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inferredcites →https://doi.org/10.1128/jvi.06957-11openalex-snapshot
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inferredcites →https://doi.org/10.1155/2013/425707openalex-snapshot
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inferredcites →https://doi.org/10.1155/2013/621423openalex-snapshot
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inferredcites →https://doi.org/10.1186/s13321-015-0066-6openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pone.0011955openalex-snapshot
Virtual Screening for HIV Protease Inhibitors: A Comparison of AutoDock 4 and Vina
inferredcites →https://doi.org/10.1371/journal.pone.0089123openalex-snapshot
A Network Pharmacology Approach to Understanding the Mechanisms of Action of Traditional Medicine: Bushenhuoxue Formula for Treatment of Chronic Kidney Disease
inferredcites →https://doi.org/10.1371/journal.ppat.1001220openalex-snapshot
HIV Capsid is a Tractable Target for Small Molecule Therapeutic Intervention
inferredcites →https://doi.org/10.1517/17460441.1.2.103openalex-snapshot
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inferredcites →https://doi.org/10.3892/mmr.2015.3638openalex-snapshot
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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-030-32857-3_17openalex-snapshot
Synergistic Effects of Chinese Herbal Medicine and Biological Networks
inferred← citeshttps://doi.org/10.1007/978-981-97-6818-9_13openalex-snapshot
Pharmacognosy, Antioxidants, Natural Products and Stroke
inferred← citeshttps://doi.org/10.1007/s00216-019-01962-4openalex-snapshot
Comprehensive TCM molecular networking based on MS/MS in silico spectra with integration of virtual screening and affinity MS screening for discovering functional ligands from natural herbs
inferred← citeshttps://doi.org/10.1007/s13205-022-03362-5openalex-snapshot
Network pharmacology-based analysis of signaling pathways of an anti-osteoporotic triterpenoid from Acyranthes bidentata Blume root
inferred← citeshttps://doi.org/10.1016/j.eng.2024.04.009openalex-snapshot
Systems Theory-Driven Framework for AI Integration into the Holistic Material Basis Research of Traditional Chinese Medicine
inferred← citeshttps://doi.org/10.1016/j.ijms.2018.09.021openalex-snapshot
Identification of chemicals and rat metabolites of Biqi capsule by liquid chromatography-tandem mass spectrometry following a network pharmacological analysis
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inferred← citeshttps://doi.org/10.1016/j.jep.2019.112044openalex-snapshot
Network pharmacology study of traditional Chinese medicines for stroke treatment and effective constituents screening
inferred← citeshttps://doi.org/10.1016/j.jep.2020.112641openalex-snapshot
Moslea Herba flavonoids alleviated influenza A virus-induced pulmonary endothelial barrier disruption via suppressing NOX4/NF-κB/MLCK pathway
inferred← citeshttps://doi.org/10.1016/j.jep.2025.120580openalex-snapshot
Huashi Baidu granules alleviates LPS-induced acute lung injury by targeting TACE-mediated inflammatory signaling and stress granules disassembly
inferred← citeshttps://doi.org/10.1016/j.jviromet.2018.02.016openalex-snapshot
A novel dual-luciferase assay for anti-HIV drug screening based on the CCR5/CXCR4 promoters
inferred← citeshttps://doi.org/10.1016/j.pharmthera.2020.107680openalex-snapshot
Chinmedomics, a new strategy for evaluating the therapeutic efficacy of herbal medicines
inferred← citeshttps://doi.org/10.1016/j.pharmthera.2024.108728openalex-snapshot
A comprehensive review on pharmacokinetic mechanism of herb-herb/drug interactions in Chinese herbal formula
inferred← citeshttps://doi.org/10.1016/j.prmcm.2022.100159openalex-snapshot
Silybin A enhances circadian clock by targeting CRY1 and disrupting its interaction with CLOCK
inferred← citeshttps://doi.org/10.1021/acs.jcim.0c00074openalex-snapshot
Discovery of Targeted Covalent Natural Products against PLK1 by Herb-Based Screening
inferred← citeshttps://doi.org/10.1038/s41401-019-0306-9openalex-snapshot
Associating 197 Chinese herbal medicine with drug targets and diseases using the similarity ensemble approach
inferred← citeshttps://doi.org/10.1038/s41598-017-13723-3openalex-snapshot
Dissecting the Underlying Pharmaceutical Mechanism of Chinese Traditional Medicine Yun-Pi-Yi-Shen-Tong-Du-Tang Acting on Ankylosing Spondylitis through Systems Biology Approaches
inferred← citeshttps://doi.org/10.1038/s41598-020-72797-8openalex-snapshot
Network pharmacology based virtual screening of active constituents of Prunella vulgaris L. and the molecular mechanism against breast cancer
inferred← citeshttps://doi.org/10.1039/c8an02482kopenalex-snapshot
Efficient ligand discovery from natural herbs by integrating virtual screening, affinity mass spectrometry and targeted metabolomics
inferred← citeshttps://doi.org/10.1039/c8tb02954gopenalex-snapshot
Anti-virus reagents targeting the capsid protein assembly
inferred← citeshttps://doi.org/10.1097/md.0000000000011886openalex-snapshot
Understanding molecular mechanisms of Rhodiola rosea for the treatment of acute mountain sickness through computational approaches (a STROBE-compliant article)
inferred← citeshttps://doi.org/10.1097/st9.0000000000000070openalex-snapshot
Drug innovation via integration of traditional Chinese and Western medicine
inferred← citeshttps://doi.org/10.1155/2017/7198645openalex-snapshot
Chinese Herbal Medicine Meets Biological Networks of Complex Diseases: A Computational Perspective
inferred← citeshttps://doi.org/10.1155/2018/7697356openalex-snapshot
Systems Pharmacology-Based Approach of Connecting Disease Genes in Genome-Wide Association Studies with Traditional Chinese Medicine
inferred← citeshttps://doi.org/10.1155/2019/7465272openalex-snapshot
Hepatoprotective Effect of Jianpi Huoxue Formula on Nonalcoholic Fatty Liver Disease Induced by Methionine-Choline-Deficient Diet in Rat
inferred← citeshttps://doi.org/10.1186/s13020-025-01288-7openalex-snapshot
Development and application of artificial intelligence in traditional Chinese medicine research and development
inferred← citeshttps://doi.org/10.1186/s43088-026-00805-3openalex-snapshot
Integrative strategies in herbal product-based Drug discovery: from computational models to molecular insights
inferred← citeshttps://doi.org/10.12688/f1000research.173985.1openalex-snapshot
Integrative Network Pharmacology and Molecular Docking Approaches in Herbal Medicine Research. A Systematic Review of Applications, Advances, and Translational Potential
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1007249openalex-snapshot
Predicting Meridian in Chinese traditional medicine using machine learning approaches
inferred← citeshttps://doi.org/10.18632/oncotarget.26553openalex-snapshot
Pairwise combinations of chemical compounds that delay yeast chronological aging through different signaling pathways display synergistic effects on the extent of aging delay
inferred← citeshttps://doi.org/10.2139/ssrn.5068496openalex-snapshot
From Experience to Evidence: Challenges and Possible Alternatives in Researching Traditional Medicine
inferred← citeshttps://doi.org/10.2147/idr.s305176openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/molecules25184082openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/molecules29225406openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/nu18010008openalex-snapshot
Network Pharmacology-Based Characterization of Mecasin (KCHO-1) as a Multi-Target Modulator of Neuroinflammatory Pathways in Alzheimer’s Disease
inferred← citeshttps://doi.org/10.37897/rjmp.2020.4.2openalex-snapshot
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inferred← citeshttps://doi.org/10.4103/jpdtsm.jpdtsm_93_24openalex-snapshot
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inferred← citeshttps://doi.org/10.51847/by4bobrjepopenalex-snapshot
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