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Gene set based association analyses for the WSSV resistance of Pacific white shrimp Litopenaeus vannamei

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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00343-014-3232-1openalex-snapshot
Molecular markers for identifying a new selected variety of Pacific white shrimp Litopenaeus vannamei
inferredcites →https://doi.org/10.1007/s00343-015-4010-4openalex-snapshot
A new ALF from Litopenaeus vannamei and its SNPs related to WSSV resistance
inferredcites →https://doi.org/10.1007/s00384-012-1478-7openalex-snapshot
Association of genetic variants in tachykinins pathway genes with colorectal cancer risk
inferredcites →https://doi.org/10.1007/s10038-008-0314-yopenalex-snapshot
Genetic interactions model among Eotaxin gene polymorphisms in asthma
inferredcites →https://doi.org/10.1007/s10709-012-9637-xopenalex-snapshot
Genetic variation and association mapping of silica concentration in rice hulls using a germplasm collection
inferredcites →https://doi.org/10.1007/s11103-005-0257-zopenalex-snapshot
Linkage disequilibrium and association studies in higher plants: Present status and future prospects
inferredcites →https://doi.org/10.1016/j.aquaculture.2012.11.014openalex-snapshot
Analysis on the dynamic changes of the amount of WSSV in Chinese shrimp Fenneropenaeus chinensis during infection
inferredcites →https://doi.org/10.1016/j.cell.2010.01.022openalex-snapshot
Pattern Recognition Receptors and Inflammation
inferredcites →https://doi.org/10.1016/j.copbio.2006.02.003openalex-snapshot
Genetic association mapping and genome organization of maize
inferredcites →https://doi.org/10.1016/j.dci.2010.08.013openalex-snapshot
Litopenaeus vannamei tumor necrosis factor receptor-associated factor 6 (TRAF6) responds to Vibrio alginolyticus and white spot syndrome virus (WSSV) infection and activates antimicrobial peptide genes
inferredcites →https://doi.org/10.1016/j.dci.2012.03.016openalex-snapshot
Recent advances in researches on the innate immunity of shrimp in China
inferredcites →https://doi.org/10.1016/j.fsi.2012.08.023openalex-snapshot
Signaling pathways regulating innate immune responses in shrimp
inferredcites →https://doi.org/10.1016/j.fsi.2014.04.009openalex-snapshot
A new anti-lipopolysaccharide factor (ALF) gene with its SNP polymorphisms related to WSSV-resistance of Litopenaeus vannamei
inferredcites →https://doi.org/10.1016/j.semcdb.2004.11.007openalex-snapshot
Mechanisms of translational control by the 3′ UTR in development and differentiation
inferredcites →https://doi.org/10.1016/s0014-5793(01)03079-4openalex-snapshot
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inferredcites →https://doi.org/10.1016/s0168-9452(01)00587-8openalex-snapshot
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inferredcites →https://doi.org/10.1016/s0734-9750(98)00018-4openalex-snapshot
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inferredcites →https://doi.org/10.1038/nature11334openalex-snapshot
Genome-wide association study indicates two novel resistance loci for severe malaria
inferredcites →https://doi.org/10.1038/ng.381openalex-snapshot
Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes
inferredcites →https://doi.org/10.1038/nrg2554openalex-snapshot
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inferredcites →https://doi.org/10.1080/07853890252953473openalex-snapshot
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inferredcites →https://doi.org/10.1086/321276openalex-snapshot
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inferredcites →https://doi.org/10.1086/518312openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/btl557openalex-snapshot
Odds ratio based multifactor-dimensionality reduction method for detecting gene–gene interactions
inferredcites →https://doi.org/10.1093/bioinformatics/btm108openalex-snapshot
GenABEL: an R library for genome-wide association analysis
inferredcites →https://doi.org/10.1093/bioinformatics/btq352openalex-snapshot
mbmdr: an R package for exploring gene–gene interactions associated with binary or quantitative traits
inferredcites →https://doi.org/10.1093/nar/gkn650openalex-snapshot
AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants
inferredcites →https://doi.org/10.1146/annurev-genom-082908-150116openalex-snapshot
Genotyping Technologies for Genetic Research
inferredcites →https://doi.org/10.1155/2011/469854openalex-snapshot
Effects of Six Functional SNPs on the Urinary 8-Isoprostane Level in a General Japanese Population; Shimane COHRE Study
inferredcites →https://doi.org/10.1158/0008-5472.can-09-3541openalex-snapshot
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inferredcites →https://doi.org/10.1186/1297-9686-34-3-275openalex-snapshot
A review on SNP and other types of molecular markers and their use in animal genetics
inferredcites →https://doi.org/10.1186/1297-9686-45-25openalex-snapshot
Genes of the RNASE5 pathway contain SNP associated with milk production traits in dairy cattle
inferredcites →https://doi.org/10.1186/1471-2105-12-99openalex-snapshot
SNP-based pathway enrichment analysis for genome-wide association studies
inferredcites →https://doi.org/10.1186/1471-2156-14-39openalex-snapshot
Candidate gene association studies: a comprehensive guide to useful in silicotools
inferredcites →https://doi.org/10.1186/1471-2407-6-114openalex-snapshot
SNP-SNP interactions in breast cancer susceptibility
inferredcites →https://doi.org/10.1186/1471-2407-9-344openalex-snapshot
Association of common variants in mismatch repair genes and breast cancer susceptibility: a multigene study
inferredcites →https://doi.org/10.1371/journal.pgen.1002101openalex-snapshot
Pathways of Distinction Analysis: A New Technique for Multi–SNP Analysis of GWAS Data
inferredcites →https://doi.org/10.1371/journal.pone.0016981openalex-snapshot
Practical and Theoretical Considerations in Study Design for Detecting Gene-Gene Interactions Using MDR and GMDR Approaches
inferredcites →https://doi.org/10.1371/journal.pone.0053452openalex-snapshot
From QTL to QTN: Candidate Gene Set Approach and a Case Study in Porcine IGF1-FoxO Pathway
inferredcites →https://doi.org/10.1371/journal.pone.0087218openalex-snapshot
SNP Discovery in the Transcriptome of White Pacific Shrimp Litopenaeus vannamei by Next Generation Sequencing
inferredcites →https://doi.org/10.3382/ps.2012-02157openalex-snapshot
Polymorphisms in Wnt signaling pathway genes are significantly associated with chicken carcass traits
inferredcites →https://doi.org/10.3389/fgene.2014.00395openalex-snapshot
A set-based association test identifies sex-specific gene sets associated with type 2 diabetes
inferredcites →https://doi.org/10.4172/2155-9546.1000228openalex-snapshot
Recent Advances in Researches on Shrimp Immune Pathway Involved in White Spot Syndrome Virus Genes Regulation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4800167openalex-extracted
The Genetic Basis of Resistance to Enterocytozoon Hepatopenaei (Ehp) and White Feces Disease (Wfd) in the White Leg Shrimp (Litopenaeus Vannamei)
inferred← citeshttps://doi.org/10.1002/age.70082openalex-snapshot
Genome Sequencing and Genome‐Wide Analysis Uncover Candidate Genes and Loci Linked to Key Production Traits in the Philippine Black Tiger Shrimp ( Penaeus monodon )
inferred← citeshttps://doi.org/10.1007/978-981-96-7987-4_10openalex-snapshot
White Spot Syndrome Virus (WSSV)
inferred← citeshttps://doi.org/10.1007/s10499-025-02095-5openalex-snapshot
Advances in anti-WSSV immune mechanisms of penaeid shrimp: decoding “Host–Pathogen Interactions for WSSD Resilience"
inferred← citeshttps://doi.org/10.1016/j.aqrep.2025.102902openalex-snapshot
Identification of genes associated with resistance trait to VPAHPND in Pacific white shrimp (Litopenaeus vannamei) using Bulk Segregation Analysis (BSA)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2018.12.068openalex-snapshot
Research frontiers in penaeid shrimp reproduction: Future trends to improve commercial production
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2020.734994openalex-snapshot
Genetic (co)variation in resistance of Pacific white shrimp Litopenaeus vannamei to acute hepatopancreatic necrosis disease (AHPND) and white spot syndrome virus (WSSV) in challenge tests
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2020.735549openalex-snapshot
Development of high throughput SNP genotyping approach using target sequencing in Pacific white shrimp and its application for genetic study
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2020.736335openalex-snapshot
Effect of Brachionus plicatilis and Navicula sp. on Pacific white shrimp growth performance, Vibrio, immunological responses and resistance to white spot virus (WSSV) in nursery biofloc system
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738424openalex-snapshot
Genetic analysis of survival in Penaeus japonicus exposed to white spot syndrome virus
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738834openalex-snapshot
A genetic linkage map of the Pacific white shrimp (Litopenaeus vannamei): QTL mapping for low-temperature tolerance and growth-related traits and identification of the candidate genes
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738835openalex-snapshot
Genetic diversity, population structure, linkage disequilibrium and GWAS for resistance to WSSV in Pacific white shrimp (Litopenaeus vannamei) using a 50K SNP chip
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.741789openalex-snapshot
The genetic basis of resistance to Enterocytozoon hepatopenaei (EHP) and White feces syndrome (WFS) in the whiteleg shrimp (Litopenaeus vannamei)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.742728openalex-snapshot
Comparative transcriptomic and metabolomic analysis of Penaeus vannamei and Penaeus indicus under the stimulation of Vibrio parahaemolyticus causing acute hepatopancreatic necrosis disease
inferred← citeshttps://doi.org/10.1016/j.dci.2018.11.003openalex-snapshot
WSV181 inhibits JAK/STAT signaling and promotes viral replication in Drosophila
inferred← citeshttps://doi.org/10.1016/j.fsi.2020.03.035openalex-snapshot
The krüppel-like factor of Penaeus vannamei negatively regulates transcription of the small subunit hemocyanin gene as part of shrimp immune response
inferred← citeshttps://doi.org/10.1016/j.fsi.2020.07.058openalex-snapshot
A SNP of the hemocyanin gene (LvHc) is a marker for high growth and ammonia-tolerance in Pacific white shrimp Litopenaeus vannamei
inferred← citeshttps://doi.org/10.1016/j.fsi.2023.108939openalex-snapshot
TLR pathway signaling molecules in burbot (Lota lota): molecular characterization, basal expression, and their response to Poly(I:C)
inferred← citeshttps://doi.org/10.1016/j.imlet.2018.12.002openalex-snapshot
Identification and immune-related analysis of SNPs in Litopenaeus vannamei Toll3 receptor
inferred← citeshttps://doi.org/10.1016/j.jip.2020.107498openalex-snapshot
Single nucleotide polymorphism associated with disease resistance in Penaeus vannamei
inferred← citeshttps://doi.org/10.1016/j.jip.2021.107665openalex-snapshot
Transcriptome analysis of pacific white shrimp (Penaeus vannamei) intestines and hepatopancreas in response to Enterocytozoon hepatopenaei (EHP) infection
inferred← citeshttps://doi.org/10.1038/s41598-020-77580-3openalex-snapshot
Genomic selection for white spot syndrome virus resistance in whiteleg shrimp boosts survival under an experimental challenge test
inferred← citeshttps://doi.org/10.1111/raq.12733openalex-snapshot
Applying genetic technologies to combat infectious diseases in aquaculture
inferred← citeshttps://doi.org/10.1111/raq.12791openalex-snapshot
Recent advances in crustacean genomics and their potential application in aquaculture
inferred← citeshttps://doi.org/10.1186/s12864-020-07254-xopenalex-snapshot
Identification of a quantitative trait loci (QTL) associated with ammonia tolerance in the Pacific white shrimp (Litopenaeus vannamei)
inferred← citeshttps://doi.org/10.3354/dao03538openalex-snapshot
Association between ALFPm3 single nucleotide polymorphism and white spot syndrome virus resistance in black tiger shrimp Penaeus monodon
inferred← citeshttps://doi.org/10.3389/fgene.2018.00120openalex-snapshot
Litopenaeus vannamei Transcriptome Profile of Populations Evaluated for Growth Performance and Exposed to White Spot Syndrome Virus (WSSV)
inferred← citeshttps://doi.org/10.3389/fgene.2021.772442openalex-snapshot
Comparison of Gene Expression Between Resistant and Susceptible Families Against VPAHPND and Identification of Biomarkers Used for Resistance Evaluation in Litopenaeus vannamei
inferred← citeshttps://doi.org/10.3389/fimmu.2025.1611481openalex-snapshot
Integrated transcriptomic and microbiomic analyses reveal mechanisms of Decapod iridescent virus 1 resistance in Macrobrachium rosenbergii
inferred← citeshttps://doi.org/10.3389/fphys.2019.00212openalex-snapshot
Identification of Functional Gene Modules Associated With STAT-Mediated Antiviral Responses to White Spot Syndrome Virus in Shrimp
inferred← citeshttps://doi.org/10.3390/biology14111532openalex-snapshot
Identification of SNP Markers in the Glutamate Dehydrogenase (GDH) and Aspartate Aminotransferase 2 (AST2) Associated with Ammonia Nitrogen Tolerance in Penaeus monodon
inferred← citeshttps://doi.org/10.3390/fishes11010031openalex-snapshot
Investigation of SNPs at NKCC Gene of Scylla paramamosain to Unveil the Low-Salinity Tolerance Phenotype
inferred← citeshttps://doi.org/10.3390/microorganisms10010191openalex-snapshot
Circulating Phylotypes of White Spot Syndrome Virus in Bangladesh and Their Virulence
inferred← citeshttps://doi.org/10.6084/m9.figshare.13324057openalex-snapshot
Additional file 1 of Identification of a quantitative trait loci (QTL) associated with ammonia tolerance in the Pacific white shrimp (Litopenaeus vannamei)
inferred← citeshttps://doi.org/10.6084/m9.figshare.13324060openalex-snapshot
Additional file 2 of Identification of a quantitative trait loci (QTL) associated with ammonia tolerance in the Pacific white shrimp (Litopenaeus vannamei)
inferred← citeshttps://doi.org/10.6084/m9.figshare.13324063openalex-snapshot
Additional file 3 of Identification of a quantitative trait loci (QTL) associated with ammonia tolerance in the Pacific white shrimp (Litopenaeus vannamei)
inferred← citeshttps://doi.org/10.6084/m9.figshare.13324066openalex-snapshot
Additional file 4 of Identification of a quantitative trait loci (QTL) associated with ammonia tolerance in the Pacific white shrimp (Litopenaeus vannamei)
inferred← citeshttps://doi.org/10.6084/m9.figshare.13324069openalex-snapshot
Additional file 5 of Identification of a quantitative trait loci (QTL) associated with ammonia tolerance in the Pacific white shrimp (Litopenaeus vannamei)
inferred← citeshttps://doi.org/10.6084/m9.figshare.13324072openalex-snapshot
Additional file 6 of Identification of a quantitative trait loci (QTL) associated with ammonia tolerance in the Pacific white shrimp (Litopenaeus vannamei)
inferred← citeshttps://doi.org/10.6084/m9.figshare.13324075openalex-snapshot
Additional file 7 of Identification of a quantitative trait loci (QTL) associated with ammonia tolerance in the Pacific white shrimp (Litopenaeus vannamei)
inferred← citeshttps://doi.org/10.6084/m9.figshare.13324078openalex-snapshot
Additional file 8 of Identification of a quantitative trait loci (QTL) associated with ammonia tolerance in the Pacific white shrimp (Litopenaeus vannamei)
inferred← citeshttps://doi.org/10.7287/peerj.5154v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Identification of SNPs potentially related to immune responses and growth performance in Litopenaeus vannamei by RNA-seq analyses (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.5154v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Identification of SNPs potentially related to immune responses and growth performance in Litopenaeus vannamei by RNA-seq analyses (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.5154v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Identification of SNPs potentially related to immune responses and growth performance in Litopenaeus vannamei by RNA-seq analyses (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.5154openalex-snapshot
Identification of SNPs potentially related to immune responses and growth performance in Litopenaeus vannamei by RNA-seq analyses
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