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Spicule formation in calcareous sponges: Coordinated expression of biomineralization genes and spicule-type specific genes

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/9783527619443.ch16openalex-snapshot

Unusually Acidic Proteins in Biomineralization

inferredcites →https://doi.org/10.1002/adma.19960080307openalex-snapshot

Stabilization of amorphous calcium carbonate by specialized macromolecules in biological and synthetic precipitates

inferredcites →https://doi.org/10.1007/978-3-642-21878-1_22openalex-snapshot

ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution

inferredcites →https://doi.org/10.1007/bf00221776openalex-snapshot

Spicule formation in the calcareous sponge Sycon ciliatum

inferredcites →https://doi.org/10.1016/j.cbpc.2005.05.013openalex-snapshot

Soluble organic matrix of two Scleractinian corals: Partial and comparative analysis

inferredcites →https://doi.org/10.1016/j.fob.2013.08.004openalex-snapshot

The enzyme carbonic anhydrase as an integral component of biogenic Ca‐carbonate formation in sponge spicules

inferredcites →https://doi.org/10.1016/j.jsb.2016.04.006openalex-snapshot

Organic matrices in metazoan calcium carbonate skeletons: Composition, functions, evolution

inferredcites →https://doi.org/10.1016/j.mam.2012.10.008openalex-snapshot

The SLC4 family of bicarbonate transporters

inferredcites →https://doi.org/10.1016/j.micron.2007.01.006openalex-snapshot

Structure and composition of calcareous sponge spicules: A review and comparison to structurally related biominerals

inferredcites →https://doi.org/10.1016/j.palaeo.2013.10.004openalex-snapshot

Not all sponges will thrive in a high-CO2 ocean: Review of the mineralogy of calcifying sponges

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

inferredcites →https://doi.org/10.1016/s0040-8166(75)80004-8openalex-snapshot

Septate junctions in the calcareous sponge Sycon ciliatum

inferredcites →https://doi.org/10.1038/nature13881openalex-snapshot

Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes

inferredcites →https://doi.org/10.1038/ncomms4905openalex-snapshot

Developmental gene expression provides clues to relationships between sponge and eumetazoan body plans

inferredcites →https://doi.org/10.1038/nmeth.1701openalex-snapshot

SignalP 4.0: discriminating signal peptides from transmembrane regions

inferredcites →https://doi.org/10.1038/srep09983openalex-snapshot

Bicarbonate transporters in corals point towards a key step in the evolution of cnidarian calcification

inferredcites →https://doi.org/10.1073/pnas.1301419110openalex-snapshot

Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata

inferredcites →https://doi.org/10.1073/pnas.82.12.4110openalex-snapshot

Interactions between acidic proteins and crystals: stereochemical requirements in biomineralization.

inferredcites →https://doi.org/10.1074/jbc.r100045200openalex-snapshot

Carbonic Anhydrase: New Insights for an Ancient Enzyme

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btr088openalex-snapshot

ProtTest 3: fast selection of best-fit models of protein evolution

inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

inferredcites →https://doi.org/10.1093/molbev/msp259openalex-snapshot

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

inferredcites →https://doi.org/10.1093/molbev/msu057openalex-snapshot

The Analysis of Eight Transcriptomes from All Poriferan Classes Reveals Surprising Genetic Complexity in Sponges

inferredcites →https://doi.org/10.1093/nar/30.1.276openalex-snapshot

The Pfam Protein Families Database

inferredcites →https://doi.org/10.1093/nar/gkh121openalex-snapshot

The Pfam protein families database

inferredcites →https://doi.org/10.1093/nar/gkj149openalex-snapshot

Pfam: clans, web tools and services

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

inferredcites →https://doi.org/10.1096/fasebj.9.2.7781928openalex-snapshot

Morphogenesis of calcitic sponge spicules: a role for specialized proteins interacting with growing crystals

inferredcites →https://doi.org/10.1098/rspb.1996.0021openalex-snapshot

Dynamics and growth patterns of calcareous sponge spicules

inferredcites →https://doi.org/10.1126/science.7008198openalex-snapshot

Minerals Formed by Organisms

inferredcites →https://doi.org/10.1139/z06-005openalex-snapshot

Phylogeny and evolution of calcareous sponges

inferredcites →https://doi.org/10.1152/ajpregu.00052.2015openalex-snapshot

Differential localization of ion transporters suggests distinct cellular mechanisms for calcification and photosynthesis between two coral species

inferredcites →https://doi.org/10.1152/physrev.00023.2012openalex-snapshot

The Divergence, Actions, Roles, and Relatives of Sodium-Coupled Bicarbonate Transporters

inferredcites →https://doi.org/10.1159/000324245openalex-snapshot

Evolutionary Origins of Animal Skeletal Biomineralization

inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

inferredcites →https://doi.org/10.1186/1471-2105-5-113openalex-snapshot

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

inferredcites →https://doi.org/10.1186/1471-2148-8-69openalex-snapshot

Molecular evolution of rDNA in early diverging Metazoa: First comparative analysis and phylogenetic application of complete SSU rRNA secondary structures in Porifera

inferredcites →https://doi.org/10.1186/2041-9139-3-14openalex-snapshot

Genome-wide analysis of the sox family in the calcareous sponge Sycon ciliatum: multiple genes with unique expression patterns

inferredcites →https://doi.org/10.1186/gb-2010-11-10-r106openalex-snapshot

Differential expression analysis for sequence count data

inferredcites →https://doi.org/10.1186/s12862-014-0230-zopenalex-snapshot

Calcareous sponge genomes reveal complex evolution of α-carbonic anhydrases and two key biomineralization enzymes

inferredcites →https://doi.org/10.1186/s12983-014-0075-8openalex-snapshot

The evolution of metazoan α-carbonic anhydrases and their roles in calcium carbonate biomineralization

inferredcites →https://doi.org/10.1186/s13227-016-0060-8openalex-snapshot

Conservation and divergence of bHLH genes in the calcisponge Sycon ciliatum

inferredcites →https://doi.org/10.1242/jcs.s2-49.194.231openalex-snapshot

Studies in Spicule Formation.: I.—The Development and Structure of the Spicules in Sycons: with Remarks on the Conformation, Modes of Disposition and Evolution of Spicules in Calcareous Sponges generally

inferredcites →https://doi.org/10.1371/journal.pone.0034617openalex-snapshot

Common Genetic Denominators for Ca++-Based Skeleton in Metazoa: Role of Osteoclast-Stimulating Factor and of Carbonic Anhydrase in a Calcareous Sponge

inferredcites →https://doi.org/10.1371/journal.pone.0067008openalex-snapshot

In silico Platform for Prediction of N-, O- and C-Glycosites in Eukaryotic Protein Sequences

inferredcites →https://doi.org/10.1371/journal.pone.0140100openalex-snapshot

The Skeleton Forming Proteome of an Early Branching Metazoan: A Molecular Survey of the Biomineralization Components Employed by the Coralline Sponge Vaceletia Sp.

inferredcites →https://doi.org/10.3109/03008209609005269openalex-snapshot

Intracrystalline Macromolecules are Involved in the Morphogenesis of Calcitic Sponge Spicules

inferredcites →https://doi.org/10.5962/bhl.title.11323openalex-snapshot

Die Kalkschwämme. Eine Monographie ...

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/zootaxa.4526.1.4zenodo-depositor-declared

A new genus of calcareous sponge discovered in the Caribbean Sea: Bidderia gen. nov. (Porifera, Calcarea, Calcinea)

inferred← citeshttps://doi.org/10.1002/adma.201907833openalex-snapshot

Microbe‐Mediated Extracellular and Intracellular Mineralization: Environmental, Industrial, and Biotechnological Applications

inferred← citeshttps://doi.org/10.1007/978-1-0716-0974-3_11openalex-snapshot

In Situ Hybridization Techniques in the Homoscleromorph Sponge Oscarella lobularis

inferred← citeshttps://doi.org/10.1007/978-3-031-51282-7_3openalex-snapshot

Biomineralisierung

inferred← citeshttps://doi.org/10.1007/978-3-031-95183-1_8openalex-snapshot

Sponges as Sources of Nanostructured Biomaterials

inferred← citeshttps://doi.org/10.1007/978-3-031-95183-1_9openalex-snapshot

Marine Sponge-Derived Biomaterials and Their Biomedical Applications

inferred← citeshttps://doi.org/10.1007/978-3-319-92483-0_3openalex-snapshot

Biomineralization

inferred← citeshttps://doi.org/10.1007/s10750-020-04274-2openalex-snapshot

Progression of regeneration in demosponge Cinachyrella cf cavernosa based on wound location

inferred← citeshttps://doi.org/10.1016/bs.apcsb.2019.02.002openalex-snapshot

From traveler to homebody: Which signaling mechanisms sponge larvae use to become adult sponges?

inferred← citeshttps://doi.org/10.1016/j.gde.2019.08.001openalex-snapshot

Produce, carry/position, and connect: morphogenesis using rigid materials

inferred← citeshttps://doi.org/10.1016/j.jsb.2025.108210openalex-snapshot

Calcium carbonate deposition in the spicules of the sponge Heteropia glomerosa (Porifera, Calcarea)

inferred← citeshttps://doi.org/10.1016/j.ympev.2018.11.015openalex-snapshot

Evolution of the main skeleton-forming genes in sponges (phylum Porifera) with special focus on the marine Haplosclerida (class Demospongiae)

inferred← citeshttps://doi.org/10.1017/s001675682100087xopenalex-snapshot

Revisiting the phosphorite deposit of Fontanarejo (central Spain): new window into the early Cambrian evolution of sponges and the microbial origin of phosphorites

inferred← citeshttps://doi.org/10.1038/s41467-023-44226-7openalex-snapshot

Silica-associated proteins from hexactinellid sponges support an alternative evolutionary scenario for biomineralization in Porifera

inferred← citeshttps://doi.org/10.1038/s41598-021-91155-wopenalex-snapshot

Genes encoding putative bicarbonate transporters as a missing molecular link between molt and mineralization in crustaceans

inferred← citeshttps://doi.org/10.1038/s41598-022-15796-1openalex-snapshot

Crystallographic control of the fabrication of an extremely sophisticated shell surface microornament in the glass scallop Catillopecten

inferred← citeshttps://doi.org/10.1042/ebc20180048openalex-snapshot

Modelling the early evolution of extracellular matrix from modern Ctenophores and Sponges

inferred← citeshttps://doi.org/10.1098/rspb.2018.0296openalex-snapshot

Naked chancelloriids from the lower Cambrian of China show evidence for sponge-type growth

inferred← citeshttps://doi.org/10.1101/2021.07.22.453456openalex-snapshot

Fast transcriptional activation of developmental signalling pathways during wound healing of the calcareous sponge Sycon ciliatum

inferred← citeshttps://doi.org/10.1101/2024.06.24.600355openalex-snapshot

Independent origins of spicules reconcile palaeontological and molecular evidence of the evolutionary history of sponges

inferred← citeshttps://doi.org/10.1111/brv.12614openalex-snapshot

The ‘biomineralization toolkit’ and the origin of animal skeletons

inferred← citeshttps://doi.org/10.1126/sciadv.adx1754openalex-snapshot

Independent origins of spicules reconcile paleontological and molecular evidence of sponge evolutionary history

inferred← citeshttps://doi.org/10.1201/9781003217503-4openalex-snapshot

Porifera

inferred← citeshttps://doi.org/10.3389/fgene.2021.624533openalex-snapshot

Carbonic Anhydrases: An Ancient Tool in Calcareous Sponge Biomineralization

inferred← citeshttps://doi.org/10.3389/fmars.2021.629629openalex-snapshot

The Essentials of Marine Biotechnology

inferred← citeshttps://doi.org/10.3390/biomimetics10040211openalex-snapshot

Mineral Composition of Skeletal Elements in Dorid Nudibranchia Onchidoris muricata (Gastropoda, Mollusca)

inferred← citeshttps://doi.org/10.3390/cells11040595openalex-snapshot

The Evolution of Biomineralization through the Co-Option of Organic Scaffold Forming Networks

inferred← citeshttps://doi.org/10.3390/ijms222212588openalex-snapshot

Calcite Nanotuned Chitinous Skeletons of Giant Ianthella basta Marine Demosponge

inferred← citeshttps://doi.org/10.3390/md22050196openalex-snapshot

Chemical Investigation of the Calcareous Marine Sponge Pericharax heteroraphis, Clathridine-A Related Derivatives Isolation, Synthesis and Osteogenic Activity

inferred← citeshttps://doi.org/10.36560/17420241943openalex-snapshot

Esponjas: O tesouro escondido da zoologia - uma análise crítica dos livros didáticos

inferred← citeshttps://doi.org/10.53846/goediss-6604openalex-snapshot

Insights into the Holobiont of the Early Branching Metazoan Vaceletia sp. and its Biomineralization Strategy

inferred← citeshttps://doi.org/10.64898/2026.01.27.702024openalex-snapshot

The fossil record of siliceous sponge spicules can be taken at face value

inferred← citeshttps://doi.org/10.7554/elife.106239openalex-snapshot

Genetic parallels in biomineralization of the calcareous sponge Sycon ciliatum and stony corals

inferred← citeshttps://doi.org/10.7554/elife.106239.1openalex-snapshot

Genetic parallels in biomineralization of the calcareous sponge Sycon ciliatum and stony corals

inferred← citeshttps://doi.org/10.7554/elife.106239.2openalex-snapshot

Genetic parallels in biomineralization of the calcareous sponge Sycon ciliatum and stony corals

inferred← citeshttps://doi.org/10.7554/elife.106239.3openalex-snapshot

Genetic parallels in biomineralization of the calcareous sponge Sycon ciliatum and stony corals

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