On the public citation graph

Accurate quantum chemical energies for tetrapeptide conformations: why MP2 data with an insufficient basis set should be handled with caution

0 signed · 106 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bip.22034openalex-snapshot
β‐turn tendency in N‐methylated peptides with dehydrophenylalanine residue: DFT study
inferredcites →https://doi.org/10.1002/chem.200500465openalex-snapshot
Structure and IR Spectrum of Phenylalanyl–Glycyl–Glycine Tripetide in the Gas‐Phase: IR/UV Experiments, Ab Initio Quantum Chemical Calculations, and Molecular Dynamic Simulations
inferredcites →https://doi.org/10.1002/jcc.20012openalex-snapshot
Intramolecular interaction energies in model alanine and glycine tetrapeptides. Evaluation of anisotropy, polarization, and correlation effects. A parallel ab initio HF/MP2, DFT, and polarizable molecular mechanics study
inferredcites →https://doi.org/10.1002/jcc.20090openalex-snapshot
A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force‐field parameter sets 53A5 and 53A6
inferredcites →https://doi.org/10.1002/jcc.20570openalex-snapshot
Density functional theory augmented with an empirical dispersion term. Interaction energies and geometries of 80 noncovalent complexes compared with ab initio quantum mechanics calculations
inferredcites →https://doi.org/10.1002/jcc.21759openalex-snapshot
Effect of the damping function in dispersion corrected density functional theory
inferredcites →https://doi.org/10.1002/wcms.1110openalex-snapshot
Spin‐component‐scaled electron correlation methods
inferredcites →https://doi.org/10.1002/wcms.59openalex-snapshot
Gn theory
inferredcites →https://doi.org/10.1002/wcms.74openalex-snapshot
Recent developments and applications of the CHARMM force fields
inferredcites →https://doi.org/10.1007/s00214-007-0310-xopenalex-snapshot
The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals
inferredcites →https://doi.org/10.1007/s002140050248openalex-snapshot
A systematic ab initio study of the water dimer in hierarchies of basis sets and correlation models
inferredcites →https://doi.org/10.1007/s002140050256openalex-snapshot
Coupling between the convergence behavior of basis set and electron correlation: a quantitative study
inferredcites →https://doi.org/10.1016/j.cplett.2011.05.007openalex-snapshot
W4-11: A high-confidence benchmark dataset for computational thermochemistry derived from first-principles W4 data
inferredcites →https://doi.org/10.1016/s0009-2614(02)01423-9openalex-snapshot
On the convergence of the (ΔECCSD(T)−ΔEMP2) term for complexes with multiple H-bonds
inferredcites →https://doi.org/10.1016/s0009-2614(89)87395-6openalex-snapshot
A fifth-order perturbation comparison of electron correlation theories
inferredcites →https://doi.org/10.1021/ct100008qopenalex-snapshot
Assessing the Performance of Popular Quantum Mechanics and Molecular Mechanics Methods and Revealing the Sequence-Dependent Energetic Features Using 100 Tetrapeptide Models
inferredcites →https://doi.org/10.1021/ct100466kopenalex-snapshot
Efficient and Accurate Double-Hybrid-Meta-GGA Density Functionals—Evaluation with the Extended GMTKN30 Database for General Main Group Thermochemistry, Kinetics, and Noncovalent Interactions
inferredcites →https://doi.org/10.1021/ct3004723openalex-snapshot
Determination of Barrier Heights for Proton Exchange in Small Water, Ammonia, and Hydrogen Fluoride Clusters with G4(MP2)-Type, MP n , and SCS-MP n Procedures—A Caveat
inferredcites →https://doi.org/10.1021/ja962310gopenalex-snapshot
Accurate ab Initio Quantum Chemical Determination of the Relative Energetics of Peptide Conformations and Assessment of Empirical Force Fields
inferredcites →https://doi.org/10.1021/jp070589popenalex-snapshot
Is Spin-Component Scaled Second-Order Møller−Plesset Perturbation Theory an Appropriate Method for the Study of Noncovalent Interactions in Molecules?
inferredcites →https://doi.org/10.1021/jp302096vopenalex-snapshot
Improved Correlation Energy Extrapolation Schemes Based on Local Pair Natural Orbital Methods
inferredcites →https://doi.org/10.1039/b718494hopenalex-snapshot
Scope and limitations of the SCS-MP2 method for stacking and hydrogen bonding interactions
inferredcites →https://doi.org/10.1039/b719294kopenalex-snapshot
Benchmark database on isolated small peptides containing an aromatic side chain: comparison between wave function and density functional theory methods and empirical force field
inferredcites →https://doi.org/10.1039/c0cp02984jopenalex-snapshot
A thorough benchmark of density functional methods for general main group thermochemistry, kinetics, and noncovalent interactions
inferredcites →https://doi.org/10.1039/c1cp22592hopenalex-snapshot
DSD-PBEP86: in search of the best double-hybrid DFT with spin-component scaled MP2 and dispersion corrections
inferredcites →https://doi.org/10.1063/1.1569242openalex-snapshot
Improved second-order Møller–Plesset perturbation theory by separate scaling of parallel- and antiparallel-spin pair correlation energies
inferredcites →https://doi.org/10.1063/1.2148954openalex-snapshot
Semiempirical hybrid density functional with perturbative second-order correlation
inferredcites →https://doi.org/10.1063/1.2712434openalex-snapshot
General orbital invariant MP2-F12 theory
inferredcites →https://doi.org/10.1063/1.2831537openalex-snapshot
Systematically convergent basis sets for explicitly correlated wavefunctions: The atoms H, He, B–Ne, and Al–Ar
inferredcites →https://doi.org/10.1063/1.3382344openalex-snapshot
A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu
inferredcites →https://doi.org/10.1063/1.3697678openalex-snapshot
Explicitly correlated Wn theory: W1-F12 and W2-F12
inferredcites →https://doi.org/10.1063/1.456153openalex-snapshot
Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen
inferredcites →https://doi.org/10.1080/00268979909482993openalex-snapshot
The MP2 limit correction applied to coupled cluster calculations of the electronic dissociation energies of the hydrogen fluoride and water dimers
inferredcites →https://doi.org/10.1371/journal.pone.0041117openalex-snapshot
The Effective Fragment Molecular Orbital Method for Fragments Connected by Covalent Bonds
inferredcites →https://doi.org/10.2478/s11532-011-0136-1openalex-snapshot
Theoretical study of the conformational energy hypersurface of cyclotrisarcosyl

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.5281/zenodo.22974111zenodo-depositor-declared
inferred← citeshttps://doi.org/10.1002/ange.201702425openalex-snapshot
The Structure of the Elusive Simplest Dipeptide Gly‐Gly
inferred← citeshttps://doi.org/10.1002/anie.201702425openalex-snapshot
The Structure of the Elusive Simplest Dipeptide Gly‐Gly
inferred← citeshttps://doi.org/10.1002/bip.23109openalex-snapshot
Tailor‐made computational protocols for precise characterization of small biological building blocks using QM and MM approaches
inferred← citeshttps://doi.org/10.1002/chem.201601828openalex-snapshot
Conformational Preferences in Small Peptide Models: The Relevance of cis/trans‐Conformations
inferred← citeshttps://doi.org/10.1002/jcc.23837openalex-snapshot
Accurate reaction barrier heights of pericyclic reactions: Surprisingly large deviations for the CBS‐QB3 composite method and their consequences in DFT benchmark studies
inferred← citeshttps://doi.org/10.1002/jcc.24669openalex-snapshot
How reliable is DFT in predicting relative energies of polycyclic aromatic hydrocarbon isomers? comparison of functionals from different rungs of jacob's ladder
inferred← citeshttps://doi.org/10.1002/jcc.25761openalex-snapshot
ACCDB: A collection of chemistry databases for broad computational purposes
inferred← citeshttps://doi.org/10.1002/jcc.26209openalex-snapshot
Double hybrid DFT calculations with Slater type orbitals
inferred← citeshttps://doi.org/10.1002/wcms.1193openalex-snapshot
Double‐hybrid density functionals
inferred← citeshttps://doi.org/10.1002/wcms.1737openalex-snapshot
Good Practices in Database Generation for Benchmarking Density Functional Theory
inferred← citeshttps://doi.org/10.1007/s00214-013-1426-9openalex-snapshot
Accurate quadruple-ζ basis-set approximation for double-hybrid density functional theory with an order of magnitude reduction in computational cost
inferred← citeshttps://doi.org/10.1007/s00214-014-1483-8openalex-snapshot
Heats of formation of the amino acids re-examined by means of W1-F12 and W2-F12 theories
inferred← citeshttps://doi.org/10.1007/s00894-017-3508-4openalex-snapshot
The influence of solvent on conformational properties of peptides with Aib residue—a DFT study
inferred← citeshttps://doi.org/10.1007/s00894-020-4342-7openalex-snapshot
Toward accurate prediction of amino acid derivatives structure and energetics from DFT: glycine conformers and their interconversions
inferred← citeshttps://doi.org/10.1016/b978-0-12-821978-2.00129-xopenalex-snapshot
Benchmark Accuracy in Thermochemistry, Kinetics, and Noncovalent Interactions
inferred← citeshttps://doi.org/10.1016/bs.arcc.2022.09.003openalex-snapshot
Quantum mechanical thermochemical predictions 100 years after the Schrödinger equation
inferred← citeshttps://doi.org/10.1016/j.chemphys.2014.07.015openalex-snapshot
Assessment of theoretical procedures for a diverse set of isomerization reactions involving double-bond migration in conjugated dienes
inferred← citeshttps://doi.org/10.1016/j.chemphys.2015.07.005openalex-snapshot
Reaction barrier heights for cycloreversion of heterocyclic rings: An Achilles’ heel for DFT and standard ab initio procedures
inferred← citeshttps://doi.org/10.1016/j.chemphys.2016.10.009openalex-snapshot
Evaluation of the performance of MP4-based procedures for a wide range of thermochemical and kinetic properties
inferred← citeshttps://doi.org/10.1016/j.chemphys.2017.05.020openalex-snapshot
Can DFT and ab initio methods adequately describe binding energies in strongly interacting C6X6⋯C2X π–π complexes?
inferred← citeshttps://doi.org/10.1016/j.comptc.2013.10.018openalex-snapshot
Mechanism of addition-fragmentation reaction of thiocarbonyls compounds in free radical polymerization. A DFT study
inferred← citeshttps://doi.org/10.1016/j.cplett.2014.03.067openalex-snapshot
Assessment of CCSD(T), MP2, DFT-D, CBS-QB3, and G4(MP2) methods for conformational study of alanine and proline dipeptides
inferred← citeshttps://doi.org/10.1016/j.cplett.2018.05.006openalex-snapshot
Exploring conformational preferences of alanine tetrapeptide by CCSD(T), MP2, and dispersion-corrected DFT methods
inferred← citeshttps://doi.org/10.1016/j.heliyon.2020.e04721openalex-snapshot
Conformational preferences of cationic β-peptide in water studied by CCSD(T), MP2, and DFT methods
inferred← citeshttps://doi.org/10.1021/acs.chemrev.5b00533openalex-snapshot
Dispersion-Corrected Mean-Field Electronic Structure Methods
inferred← citeshttps://doi.org/10.1021/acs.jctc.1c00006openalex-snapshot
CHAL336 Benchmark Set: How Well Do Quantum-Chemical Methods Describe Chalcogen-Bonding Interactions?
inferred← citeshttps://doi.org/10.1021/acs.jctc.1c01128openalex-snapshot
Fast and Accurate Quantum Mechanical Modeling of Large Molecular Systems Using Small Basis Set Hartree–Fock Methods Corrected with Atom-Centered Potentials
inferred← citeshttps://doi.org/10.1021/acs.jctc.2c00036openalex-snapshot
Small-Basis Set Density-Functional Theory Methods Corrected with Atom-Centered Potentials
inferred← citeshttps://doi.org/10.1021/acs.jctc.2c00426openalex-snapshot
Explicitly Correlated Double-Hybrid DFT: A Comprehensive Analysis of the Basis Set Convergence on the GMTKN55 Database
inferred← citeshttps://doi.org/10.1021/acs.jctc.4c00801openalex-snapshot
Toward Reliable Conformational Energies of Amino Acids and Dipeptides─The DipCONFS Benchmark and DipCONL Datasets
inferred← citeshttps://doi.org/10.1021/acs.jctc.4c01143openalex-snapshot
QUEST#4X: An Extension of QUEST#4 for Benchmarking Multireference Wave Function Methods
inferred← citeshttps://doi.org/10.1021/acs.jctc.5b00515openalex-snapshot
Quantum Chemical Benchmark Study on 46 RNA Backbone Families Using a Dinucleotide Unit
inferred← citeshttps://doi.org/10.1021/acs.jctc.5b01066openalex-snapshot
Benchmark ab Initio Conformational Energies for the Proteinogenic Amino Acids through Explicitly Correlated Methods. Assessment of Density Functional Methods
inferred← citeshttps://doi.org/10.1021/acs.jctc.5c01380openalex-snapshot
Gold-Standard Chemical Database 137 (GSCDB137): A Diverse Set of Accurate Energy Differences for Assessing and Developing Density Functionals
inferred← citeshttps://doi.org/10.1021/acs.jctc.7b01074openalex-snapshot
Toward Accurate Conformational Energies of Smaller Peptides and Medium-Sized Macrocycles: MPCONF196 Benchmark Energy Data Set
inferred← citeshttps://doi.org/10.1021/acs.jctc.7b01158openalex-snapshot
Atom-Centered Potentials with Dispersion-Corrected Minimal-Basis-Set Hartree–Fock: An Efficient and Accurate Computational Approach for Large Molecular Systems
inferred← citeshttps://doi.org/10.1021/acs.jctc.8b00648openalex-snapshot
Electronic Energies Are Not Enough: An Ion Mobility-Aided, Quantum Chemical Benchmark Analysis of H+GPGG Conformers
inferred← citeshttps://doi.org/10.1021/acs.jctc.8b00842openalex-snapshot
The Nonlocal Kernel in van der Waals Density Functionals as an Additive Correction: An Extensive Analysis with Special Emphasis on the B97M-V and ωB97M-V Approaches
inferred← citeshttps://doi.org/10.1021/acs.jctc.8b01176openalex-snapshot
GFN2-xTB─An Accurate and Broadly Parametrized Self-Consistent Tight-Binding Quantum Chemical Method with Multipole Electrostatics and Density-Dependent Dispersion Contributions
inferred← citeshttps://doi.org/10.1021/acs.jpca.0c00425openalex-snapshot
Erratum to “Toward a Quantum-Chemical Benchmark Set for Enzymatically Catalyzed Reactions: Important Steps and Insights”
inferred← citeshttps://doi.org/10.1021/acs.jpca.8b04058openalex-snapshot
A Comprehensive Assessment of the Effectiveness of Orbital Optimization in Double-Hybrid Density Functionals in the Treatment of Thermochemistry, Kinetics, and Noncovalent Interactions
inferred← citeshttps://doi.org/10.1021/acs.jpca.9b05088openalex-snapshot
Toward a Quantum-Chemical Benchmark Set for Enzymatically Catalyzed Reactions: Important Steps and Insights
inferred← citeshttps://doi.org/10.1021/acs.jpcb.6b07551openalex-snapshot
Comparative Assessment of Different RNA Tetranucleotides from the DFT-D3 and Force Field Perspective
inferred← citeshttps://doi.org/10.1021/acssuschemeng.7b04489openalex-snapshot
The High Performance of Choline Arginate for Biomass Pretreatment Is Due to Remarkably Strong Hydrogen Bonding by the Anion
inferred← citeshttps://doi.org/10.1021/ct400321mopenalex-snapshot
Efficient Methods for the Quantum Chemical Treatment of Protein Structures: The Effects of London-Dispersion and Basis-Set Incompleteness on Peptide and Water-Cluster Geometries
inferred← citeshttps://doi.org/10.1021/ct500026vopenalex-snapshot
How Do DFT-DCP, DFT-NL, and DFT-D3 Compare for the Description of London-Dispersion Effects in Conformers and General Thermochemistry?
inferred← citeshttps://doi.org/10.1021/jp312644topenalex-snapshot
The Melatonin Conformer Space: Benchmark and Assessment of Wave Function and DFT Methods for a Paradigmatic Biological and Pharmacological Molecule
inferred← citeshttps://doi.org/10.1021/jp4126478openalex-snapshot
Separate Electronic Attenuation Allowing a Spin-Component-Scaled Second-Order Møller–Plesset Theory to Be Effective for Both Thermochemistry and Noncovalent Interactions
inferred← citeshttps://doi.org/10.1021/jp5092653openalex-snapshot
Liquid Hot NAGMA Cooled to 0.4 K: Benchmark Thermochemistry of a Gas-Phase Peptide
inferred← citeshttps://doi.org/10.1021/jp510148hopenalex-snapshot
Recommending Hartree–Fock Theory with London-Dispersion and Basis-Set-Superposition Corrections for the Optimization or Quantum Refinement of Protein Structures
inferred← citeshttps://doi.org/10.1038/sdata.2018.310openalex-snapshot
PEPCONF, a diverse data set of peptide conformational energies
inferred← citeshttps://doi.org/10.1039/c7cp04913gopenalex-snapshot
A look at the density functional theory zoo with the advanced GMTKN55 database for general main group thermochemistry, kinetics and noncovalent interactions
inferred← citeshttps://doi.org/10.1039/c8cp03852jopenalex-snapshot
Semi-empirical or non-empirical double-hybrid density functionals: which are more robust?
inferred← citeshttps://doi.org/10.1039/c8qo01092gopenalex-snapshot
Deciphering the exceptional selectivity of semipinacol rearrangements in cis -fused β-lactam diols using high-level quantum chemical methods
inferred← citeshttps://doi.org/10.1039/d0cp04137hopenalex-snapshot
Establishing the accuracy of density functional approaches for the description of noncovalent interactions in biomolecules
inferred← citeshttps://doi.org/10.1039/d0cp05111jopenalex-snapshot
DOPC versus DOPE as a helper lipid for gene-therapies: molecular dynamics simulations with DLin-MC3-DMA
inferred← citeshttps://doi.org/10.1039/d0cp05993eopenalex-snapshot
Conformational energies and equilibria of cyclic dinucleotides in vacuo and in solution: computational chemistry vs. NMR experiments
inferred← citeshttps://doi.org/10.1063/1.4921697openalex-snapshot
Estimating the CCSD basis-set limit energy from small basis sets: basis-set extrapolations vs additivity schemes
inferred← citeshttps://doi.org/10.1063/1.5090222openalex-snapshot
A generally applicable atomic-charge dependent London dispersion correction
inferred← citeshttps://doi.org/10.1063/5.0011849openalex-snapshot
Efficient yet accurate dispersion-corrected semilocal exchange–correlation functionals for non-covalent interactions
inferred← citeshttps://doi.org/10.1063/5.0168569openalex-snapshot
Corrected density functional theory and the random phase approximation: Improved accuracy at little extra cost
inferred← citeshttps://doi.org/10.1071/ch17501openalex-snapshot
A Computational Investigation of the Uncatalysed and Water-Catalysed Acyl Rearrangements in Ingenol Esters*
inferred← citeshttps://doi.org/10.1071/ch19276openalex-snapshot
Thermochemistry of Guanine Tautomers Re-Examined by Means of High-Level CCSD(T) Composite Ab Initio Methods*
inferred← citeshttps://doi.org/10.1071/ch21133openalex-snapshot
Assessing the Applicability of the Geometric Counterpoise Correction in B2PLYP/Double-? Calculations for Thermochemistry, Kinetics, and Noncovalent Interactions*
inferred← citeshttps://doi.org/10.1080/00268976.2013.869363openalex-snapshot
Shared memory multiprocessing implementation of resolution-of-the-identity second-order Møller–Plesset perturbation theory with attenuated and unattenuated results for intermolecular interactions between large molecules
inferred← citeshttps://doi.org/10.1080/00268976.2015.1081418openalex-snapshot
Can DFT and ab initio methods describe all aspects of the potential energy surface of cycloreversion reactions?
inferred← citeshttps://doi.org/10.1080/08927022.2015.1066504openalex-snapshot
Problems, successes and challenges for the application of dispersion-corrected density-functional theory combined with dispersion-based implicit solvent models to large-scale hydrophobic self-assembly and polymorphism
inferred← citeshttps://doi.org/10.1088/2516-1075/ac22b8openalex-snapshot
Performance of small basis set Hartree–Fock methods for modeling non-covalent interactions
inferred← citeshttps://doi.org/10.12794/metadc500195openalex-snapshot
Ab Initio and Density Functional Investigation of the Conformer Manifold of Melatonin and a Proposal for a Simple Dft-based Diagnostic for Nondynamical Correlation
inferred← citeshttps://doi.org/10.26434/chemrxiv.13521377openalex-snapshot
The CHAL336 Benchmark Set: How Well Do Quantum-Chemical Methods Describe Chalcogen-Bonding Interactions?
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.