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Single cell transcriptomics: moving towards multi-omics

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/anie.201005969openalex-snapshot

Genome‐wide Correlation between mRNA and Protein in a Single Cell

inferredcites →https://doi.org/10.1002/chem.201705014openalex-snapshot

Highly Multiplexed Single‐Cell Protein Analysis

inferredcites →https://doi.org/10.1007/s10142-016-0524-xopenalex-snapshot

Long noncoding RNA (lincRNA), a new paradigm in gene expression control

inferredcites →https://doi.org/10.1016/0012-1606(74)90291-7openalex-snapshot

Experimental analysis of the migration and differentiation of neuroblasts of the autonomic nervous system and of neurectodermal mesenchymal derivatives, using a biological cell marking technique

inferredcites →https://doi.org/10.1016/0012-1606(85)90011-9openalex-snapshot

Cell lineage of zebrafish blastomeres

inferredcites →https://doi.org/10.1016/0361-9230(80)90182-3openalex-snapshot

Age-related changes in neuronal RNA content in rhesus monkeys (Macaca mulatta)

inferredcites →https://doi.org/10.1016/j.cell.2014.09.038openalex-snapshot

Genome-wide RNA Tomography in the Zebrafish Embryo

inferredcites →https://doi.org/10.1016/j.cell.2015.04.001openalex-snapshot

Single-Cell Transcriptome Analyses Reveal Signals to Activate Dormant Neural Stem Cells

inferredcites →https://doi.org/10.1016/j.cell.2015.04.044openalex-snapshot

Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells

inferredcites →https://doi.org/10.1016/j.cell.2015.05.002openalex-snapshot

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

inferredcites →https://doi.org/10.1016/j.cell.2015.07.048openalex-snapshot

Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

inferredcites →https://doi.org/10.1016/j.cell.2015.08.027openalex-snapshot

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

inferredcites →https://doi.org/10.1016/j.cell.2016.03.014openalex-snapshot

On the Dependency of Cellular Protein Levels on mRNA Abundance

inferredcites →https://doi.org/10.1016/j.cell.2017.12.007openalex-snapshot

Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing

inferredcites →https://doi.org/10.1016/j.cell.2018.02.001openalex-snapshot

Mapping the Mouse Cell Atlas by Microwell-Seq

inferredcites →https://doi.org/10.1016/j.celrep.2012.08.003openalex-snapshot

CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification

inferredcites →https://doi.org/10.1016/j.celrep.2014.04.011openalex-snapshot

Single-Cell RNA Sequencing Reveals T Helper Cells Synthesizing Steroids De Novo to Contribute to Immune Homeostasis

inferredcites →https://doi.org/10.1016/j.celrep.2015.12.021openalex-snapshot

Simultaneous Multiplexed Measurement of RNA and Proteins in Single Cells

inferredcites →https://doi.org/10.1016/j.lungcan.2014.03.020openalex-snapshot

Identification of mRNAs and lincRNAs associated with lung cancer progression using next-generation RNA sequencing from laser micro-dissected archival FFPE tissue specimens

inferredcites →https://doi.org/10.1016/j.mam.2017.09.002openalex-snapshot

Single cell epigenome sequencing technologies

inferredcites →https://doi.org/10.1016/j.molcel.2016.02.030openalex-snapshot

Digital Quantification of Proteins and mRNA in Single Mammalian Cells

inferredcites →https://doi.org/10.1016/j.molcel.2017.11.017openalex-snapshot

Dissecting Cell-Type Composition and Activity-Dependent Transcriptional State in Mammalian Brains by Massively Parallel Single-Nucleus RNA-Seq

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Ligation-based molecular tools for lab-on-a-chip devices

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Enhancer RNAs and regulated transcriptional programs

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The impact of next-generation sequencing technology on genetics

inferredcites →https://doi.org/10.1016/j.tig.2016.12.003openalex-snapshot

Single-Cell Multiomics: Multiple Measurements from Single Cells

inferredcites →https://doi.org/10.1021/acs.analchem.6b03214openalex-snapshot

Assay of Genome-Wide Transcriptome and Secreted Proteins on the Same Single Immune Cells by Microfluidics and RNA Sequencing

inferredcites →https://doi.org/10.1038/898openalex-snapshot

Mutation detection and single-molecule counting using isothermal rolling-circle amplification

inferredcites →https://doi.org/10.1038/cr.2016.23openalex-snapshot

Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas

inferredcites →https://doi.org/10.1038/nature03702openalex-snapshot

MicroRNA expression profiles classify human cancers

inferredcites →https://doi.org/10.1038/nature04599openalex-snapshot

Stochastic protein expression in individual cells at the single molecule level

inferredcites →https://doi.org/10.1038/nature05913openalex-snapshot

Perceptions of epigenetics

inferredcites →https://doi.org/10.1038/nature06196openalex-snapshot

Identification of stem cells in small intestine and colon by marker gene Lgr5

inferredcites →https://doi.org/10.1038/nature06293openalex-snapshot

Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system

inferredcites →https://doi.org/10.1038/nature09326openalex-snapshot

Functional roles for noise in genetic circuits

inferredcites →https://doi.org/10.1038/nature10100openalex-snapshot

A gene regulatory network controlling the embryonic specification of endoderm

inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot

Topological domains in mammalian genomes identified by analysis of chromatin interactions

inferredcites →https://doi.org/10.1038/nature13173openalex-snapshot

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

inferredcites →https://doi.org/10.1038/nature13448openalex-snapshot

Genome sequencing of normal cells reveals developmental lineages and mutational processes

inferredcites →https://doi.org/10.1038/nature13602openalex-snapshot

Putative cis-regulatory drivers in colorectal cancer

inferredcites →https://doi.org/10.1038/nature14590openalex-snapshot

Single-cell chromatin accessibility reveals principles of regulatory variation

inferredcites →https://doi.org/10.1038/nature14966openalex-snapshot

Single-cell messenger RNA sequencing reveals rare intestinal cell types

inferredcites →https://doi.org/10.1038/nature23653openalex-snapshot

Polylox barcoding reveals haematopoietic stem cell fates realized in vivo

inferredcites →https://doi.org/10.1038/nbt.1977openalex-snapshot

Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding

inferredcites →https://doi.org/10.1038/nbt.2282openalex-snapshot

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

inferredcites →https://doi.org/10.1038/nbt.2967openalex-snapshot

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

inferredcites →https://doi.org/10.1038/nbt.3102openalex-snapshot

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

inferredcites →https://doi.org/10.1038/nbt.3129openalex-snapshot

Integrated genome and transcriptome sequencing of the same cell

inferredcites →https://doi.org/10.1038/nbt.3192openalex-snapshot

Spatial reconstruction of single-cell gene expression data

inferredcites →https://doi.org/10.1038/nbt.3209openalex-snapshot

High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin

inferredcites →https://doi.org/10.1038/nbt.3383openalex-snapshot

Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state

inferredcites →https://doi.org/10.1038/nbt.3443openalex-snapshot

Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes

inferredcites →https://doi.org/10.1038/nbt.3445openalex-snapshot

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq

inferredcites →https://doi.org/10.1038/nbt.3880openalex-snapshot

Single-cell genome sequencing at ultra-high-throughput with microfluidic droplet barcoding

inferredcites →https://doi.org/10.1038/nbt.3973openalex-snapshot

Multiplexed quantification of proteins and transcripts in single cells

inferredcites →https://doi.org/10.1038/nbt.4124openalex-snapshot

Simultaneous lineage tracing and cell-type identification using CRISPR–Cas9-induced genetic scars

inferredcites →https://doi.org/10.1038/nbt0898-737openalex-snapshot

Identification of expressed genes by laser-mediated manipulation of single cells

inferredcites →https://doi.org/10.1038/ncomms14049openalex-snapshot

Massively parallel digital transcriptional profiling of single cells

inferredcites →https://doi.org/10.1038/nmeth.1315openalex-snapshot

mRNA-Seq whole-transcriptome analysis of a single cell

inferredcites →https://doi.org/10.1038/nmeth.1360openalex-snapshot

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis

inferredcites →https://doi.org/10.1038/nmeth.1778openalex-snapshot

Counting absolute numbers of molecules using unique molecular identifiers

inferredcites →https://doi.org/10.1038/nmeth.2069openalex-snapshot

Single-cell systems biology by super-resolution imaging and combinatorial labeling

inferredcites →https://doi.org/10.1038/nmeth.2563openalex-snapshot

In situ sequencing for RNA analysis in preserved tissue and cells

inferredcites →https://doi.org/10.1038/nmeth.2639openalex-snapshot

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

inferredcites →https://doi.org/10.1038/nmeth.2762openalex-snapshot

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification

inferredcites →https://doi.org/10.1038/nmeth.2892openalex-snapshot

Single-cell in situ RNA profiling by sequential hybridization

inferredcites →https://doi.org/10.1038/nmeth.2930openalex-snapshot

Validation of noise models for single-cell transcriptomics

inferredcites →https://doi.org/10.1038/nmeth.3035openalex-snapshot

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

inferredcites →https://doi.org/10.1038/nmeth.3370openalex-snapshot

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

inferredcites →https://doi.org/10.1038/nmeth.3549openalex-snapshot

Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments

inferredcites →https://doi.org/10.1038/nmeth.3728openalex-snapshot

Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity

inferredcites →https://doi.org/10.1038/nmeth.3742openalex-snapshot

Highly multiplexed simultaneous detection of RNAs and proteins in single cells

inferredcites →https://doi.org/10.1038/nmeth.4028openalex-snapshot

Simul-seq: combined DNA and RNA sequencing for whole-genome and transcriptome profiling

inferredcites →https://doi.org/10.1038/nmeth.4154openalex-snapshot

Sequencing thousands of single-cell genomes with combinatorial indexing

inferredcites →https://doi.org/10.1038/nmeth.4155openalex-snapshot

Massively multiplex single-cell Hi-C

inferredcites →https://doi.org/10.1038/nmeth.4179openalex-snapshot

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

inferredcites →https://doi.org/10.1038/nmeth.4380openalex-snapshot

Simultaneous epitope and transcriptome measurement in single cells

inferredcites →https://doi.org/10.1038/nmeth.4407openalex-snapshot

Massively parallel single-nucleus RNA-seq with DroNc-seq

inferredcites →https://doi.org/10.1038/nmeth1157openalex-snapshot

Sequence census methods for functional genomics

inferredcites →https://doi.org/10.1038/nmeth723openalex-snapshot

In situ genotyping individual DNA molecules by target-primed rolling-circle amplification of padlock probes

inferredcites →https://doi.org/10.1038/nmeth974openalex-snapshot

Sensitive protein detection via triple-binder proximity ligation assays

inferredcites →https://doi.org/10.1038/nn.3881openalex-snapshot

Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing

inferredcites →https://doi.org/10.1038/nprot.2006.326openalex-snapshot

Whole-genome multiple displacement amplification from single cells

inferredcites →https://doi.org/10.1038/nprot.2009.236openalex-snapshot

RNA-Seq analysis to capture the transcriptome landscape of a single cell

inferredcites →https://doi.org/10.1038/nprot.2012.039openalex-snapshot

Genome-wide copy number analysis of single cells

inferredcites →https://doi.org/10.1038/nprot.2013.109openalex-snapshot

Single-molecule mRNA detection and counting in mammalian tissue

inferredcites →https://doi.org/10.1038/nprot.2015.039openalex-snapshot

Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing

inferredcites →https://doi.org/10.1038/nprot.2016.138openalex-snapshot

Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq

inferredcites →https://doi.org/10.1038/nprot.2016.187openalex-snapshot

Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq)

inferredcites →https://doi.org/10.1038/nrg.2015.16openalex-snapshot

Single-cell genome sequencing: current state of the science

inferredcites →https://doi.org/10.1038/nrg.2016.159openalex-snapshot

Building a lineage from single cells: genetic techniques for cell lineage tracking

inferredcites →https://doi.org/10.1038/nrg.2016.46openalex-snapshot

Lessons from non-canonical splicing

inferredcites →https://doi.org/10.1038/nrg3980openalex-snapshot

Single-cell epigenomics: techniques and emerging applications

inferredcites →https://doi.org/10.1038/s41467-017-02659-xopenalex-snapshot

Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation

inferredcites →https://doi.org/10.1038/s41467-018-02866-0openalex-snapshot

Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs

inferredcites →https://doi.org/10.1038/s41467-018-03149-4openalex-snapshot

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

inferredcites →https://doi.org/10.1038/s41598-017-16546-4openalex-snapshot

STRT-seq-2i: dual-index 5ʹ single cell and nucleus RNA-seq on an addressable microwell array

inferredcites →https://doi.org/10.1038/s41598-018-21153-yopenalex-snapshot

Combined aptamer and transcriptome sequencing of single cells

inferredcites →https://doi.org/10.1038/s41598-018-22599-wopenalex-snapshot

Simultaneous Multiparameter Cellular Energy Metabolism Profiling of Small Populations of Cells

inferredcites →https://doi.org/10.1038/srep06485openalex-snapshot

Co-detection and sequencing of genes and transcripts from the same single cells facilitated by a microfluidics platform

inferredcites →https://doi.org/10.1038/srep44636openalex-snapshot

Platform for combined analysis of functional and biomolecular phenotypes of the same cell

inferredcites →https://doi.org/10.1039/c6lc00762gopenalex-snapshot

Dual transcript and protein quantification in a massive single cell array

inferredcites →https://doi.org/10.1039/c7lc01284eopenalex-snapshot

Inertial-ordering-assisted droplet microfluidics for high-throughput single-cell RNA-sequencing

inferredcites →https://doi.org/10.1073/pnas.0400552101openalex-snapshot

Cytokine detection by antibody-based proximity ligation

inferredcites →https://doi.org/10.1073/pnas.1319700110openalex-snapshot

RNA-sequencing from single nuclei

inferredcites →https://doi.org/10.1080/15476286.2016.1201618openalex-snapshot

Single-cell RNA-sequencing: The future of genome biology is now

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Plasticity of DNA methylation in a nerve injury model of pain

inferredcites →https://doi.org/10.1093/clinchem/48.10.1819openalex-snapshot

The History and Future of the Fluorescence Activated Cell Sorter and Flow Cytometry: A View from Stanford

inferredcites →https://doi.org/10.1093/nar/gkl357openalex-snapshot

Polyadenylation of ribosomal RNA in human cells

inferredcites →https://doi.org/10.1093/nar/gks203openalex-snapshot

Comparison of microfluidic digital PCR and conventional quantitative PCR for measuring copy number variation

inferredcites →https://doi.org/10.1093/nar/gkt316openalex-snapshot

Non-polyadenylated transcription in embryonic stem cells reveals novel non-coding RNA related to pluripotency and differentiation

inferredcites →https://doi.org/10.1096/fj.15-273797openalex-snapshot

Single‐cell transcriptomics and functional target validation of brown adipocytes show their complex roles in metabolic homeostasis

inferredcites →https://doi.org/10.1101/gr.110882.110openalex-snapshot

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

inferredcites →https://doi.org/10.1101/gr.161679.113openalex-snapshot

Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing

inferredcites →https://doi.org/10.1101/gr.223263.117openalex-snapshot

SIDR: simultaneous isolation and parallel sequencing of genomic DNA and total RNA from single cells

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How is mRNA expression predictive for protein expression? A correlation study on human circulating monocytes

inferredcites →https://doi.org/10.1117/1.jbo.17.3.037008openalex-snapshot

Method for physiologic phenotype characterization at the single-cell level in non-interacting and interacting cells

inferredcites →https://doi.org/10.1126/science.1146524openalex-snapshot

A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression

inferredcites →https://doi.org/10.1126/science.1170995openalex-snapshot

Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing

inferredcites →https://doi.org/10.1126/science.1198704openalex-snapshot

Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum

inferredcites →https://doi.org/10.1126/science.1229164openalex-snapshot

Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell

inferredcites →https://doi.org/10.1126/science.1247651openalex-snapshot

Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types

inferredcites →https://doi.org/10.1126/science.1250212openalex-snapshot

Highly Multiplexed Subcellular RNA Sequencing in Situ

inferredcites →https://doi.org/10.1126/science.1254257openalex-snapshot

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

inferredcites →https://doi.org/10.1126/science.1258367openalex-snapshot

Combinatorial labeling of single cells for gene expression cytometry

inferredcites →https://doi.org/10.1126/science.1260088openalex-snapshot

Expansion microscopy

inferredcites →https://doi.org/10.1126/science.aaa1934openalex-snapshot

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

inferredcites →https://doi.org/10.1126/science.aab1601openalex-snapshot

Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing

inferredcites →https://doi.org/10.1126/science.aab1785openalex-snapshot

Somatic mutation in single human neurons tracks developmental and transcriptional history

inferredcites →https://doi.org/10.1126/science.aad7038openalex-snapshot

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons

inferredcites →https://doi.org/10.1126/science.aaf2403openalex-snapshot

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

inferredcites →https://doi.org/10.1126/science.aaf7907openalex-snapshot

Whole-organism lineage tracing by combinatorial and cumulative genome editing

inferredcites →https://doi.org/10.1126/science.aaf8060openalex-snapshot

A vacuum flash–assisted solution process for high-efficiency large-area perovskite solar cells

inferredcites →https://doi.org/10.1126/science.aak9787openalex-snapshot

Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)

inferredcites →https://doi.org/10.1126/science.aam8940openalex-snapshot

Comprehensive single-cell transcriptional profiling of a multicellular organism

inferredcites →https://doi.org/10.1126/science.aam8999openalex-snapshot

Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding

inferredcites →https://doi.org/10.1126/science.aau0730openalex-snapshot

Joint profiling of chromatin accessibility and gene expression in thousands of single cells

inferredcites →https://doi.org/10.1146/annurev-biochem-061308-093216openalex-snapshot

Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology

inferredcites →https://doi.org/10.1158/0008-5472.can-15-0484openalex-snapshot

Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers

inferredcites →https://doi.org/10.1186/gb-2011-12-2-r16openalex-snapshot

Genomewide characterization of non-polyadenylated RNAs

inferredcites →https://doi.org/10.1186/gb-2013-14-4-r31openalex-snapshot

Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

inferredcites →https://doi.org/10.1186/gb-2014-15-5-r75openalex-snapshot

Lentiviral and targeted cellular barcoding reveals ongoing clonal dynamics of cell lines in vitro and in vivo

inferredcites →https://doi.org/10.1186/s12915-017-0396-0openalex-snapshot

Q&A: using Patch-seq to profile single cells

inferredcites →https://doi.org/10.1186/s12943-017-0663-2openalex-snapshot

CircRNA: functions and properties of a novel potential biomarker for cancer

inferredcites →https://doi.org/10.1186/s13059-015-0586-4openalex-snapshot

Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution

inferredcites →https://doi.org/10.1186/s13059-015-0616-2openalex-snapshot

SNES: single nucleus exome sequencing

inferredcites →https://doi.org/10.1186/s13059-015-0706-1openalex-snapshot

Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos

inferredcites →https://doi.org/10.1186/s13059-016-0938-8openalex-snapshot

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq

inferredcites →https://doi.org/10.1186/s13059-016-0950-zopenalex-snapshot

Simultaneous profiling of transcriptome and DNA methylome from a single cell

inferredcites →https://doi.org/10.1186/s13059-016-1045-6openalex-snapshot

Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction

inferredcites →https://doi.org/10.1186/s13059-017-1218-yopenalex-snapshot

Challenges and emerging directions in single-cell analysis

inferredcites →https://doi.org/10.1242/dev.150789openalex-snapshot

Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland

inferredcites →https://doi.org/10.1371/journal.pgen.1004053openalex-snapshot

The Genome of Spironucleus salmonicida Highlights a Fish Pathogen Adapted to Fluctuating Environments

inferredcites →https://doi.org/10.1371/journal.pone.0071820openalex-snapshot

Sequencing mRNA from Cryo-Sliced Drosophila Embryos to Determine Genome-Wide Spatial Patterns of Gene Expression

inferredcites →https://doi.org/10.1371/journal.pone.0116328openalex-snapshot

High-Throughput Single-Cell Labeling (Hi-SCL) for RNA-Seq Using Drop-Based Microfluidics

inferredcites →https://doi.org/10.1373/clinchem.2012.191445openalex-snapshot

Quantitative PCR Analysis of DNA, RNAs, and Proteins in the Same Single Cell

inferredcites →https://doi.org/10.2144/000112755openalex-snapshot

Improved Multiple Displacement Amplification with φ29 DNA Polymerase for Genotyping of Single Human Cells

inferredcites →https://doi.org/10.2144/000114340openalex-snapshot

Simultaneous Detection of mRNA and Protein in Single Cells Using Immunofluorescence-Combined Single-Molecule RNA FISH

inferredcites →https://doi.org/10.4161/epi.19565openalex-snapshot

Diametrically opposite methylome-transcriptome relationships in high- and low-CpG promoter genes in postmitotic neural rat tissue

inferredcites →https://doi.org/10.7554/elife.23203openalex-snapshot

Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Multiplexed Label‐Free Biomarker Detection by Targeted Disassembly of Variable‐Length DNA Payload Chains

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Status and Potential of Single‐Cell Transcriptomics for Understanding Plant Development and Functional Biology

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Aging mechanisms—A perspective mostly from Drosophila

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The impact of asymmetrical gene expression on the development of spike morphology in Triticum aestivum

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Bioinformatics perspectives on transcriptomics: A comprehensive review of bulk and single‐cell RNA sequencing analyses

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Microfluidic Single‐Cell Omics Analysis

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Single‐Cell Sequencing Methodologies: From Transcriptome to Multi‐Dimensional Measurement

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Fluorescent Light Opening New Horizons

inferred← citeshttps://doi.org/10.1007/s00299-024-03168-0openalex-snapshot

Plant biotechnology research with single-cell transcriptome: recent advancements and prospects

inferred← citeshttps://doi.org/10.1007/s00335-020-09834-4openalex-snapshot

Advances of single-cell genomics and epigenomics in human disease: where are we now?

inferred← citeshttps://doi.org/10.1007/s11426-020-9925-8openalex-snapshot

Dispen-Seq: a single-microparticle dispenser based strategy towards flexible cell barcoding for single-cell RNA sequencing

inferred← citeshttps://doi.org/10.1007/s13238-020-00727-5openalex-snapshot

New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data

inferred← citeshttps://doi.org/10.1007/s13721-026-00806-3openalex-snapshot

Genome-Guided Mining and Integrated in Silico Approach Uncover Potential of Streptomyces Secondary Metabolites as Multi-Target Agents Against Candida albicans Biofilm Formation

inferred← citeshttps://doi.org/10.1016/j.bios.2023.115213openalex-snapshot

High-throughput microfluidic droplets in biomolecular analytical system: A review

inferred← citeshttps://doi.org/10.1016/j.cca.2020.10.021openalex-snapshot

Omics research in vascular calcification

inferred← citeshttps://doi.org/10.1016/j.cca.2020.10.022openalex-snapshot

Omics research in vascular calcification

inferred← citeshttps://doi.org/10.1016/j.mocell.2025.100200openalex-snapshot

Omics technologies as powerful approaches to unravel colorectal cancer complexity and improve its management

inferred← citeshttps://doi.org/10.1016/j.molp.2020.10.012openalex-snapshot

Single-Cell Transcriptome Analysis in Plants: Advances and Challenges

inferred← citeshttps://doi.org/10.1021/acs.analchem.0c01613openalex-snapshot

A Highly Sensitive, Accurate, and Automated Single-Cell RNA Sequencing Platform with Digital Microfluidics

inferred← citeshttps://doi.org/10.1021/acs.analchem.1c05312openalex-snapshot

Decoding Expression Dynamics of Protein and Transcriptome at the Single-Cell Level in Paired Picoliter Chambers

inferred← citeshttps://doi.org/10.1021/acs.analchem.4c04060openalex-snapshot

Introducing “Identification Probability” for Automated and Transferable Assessment of Metabolite Identification Confidence in Metabolomics and Related Studies

inferred← citeshttps://doi.org/10.1021/acs.chemrev.0c00901openalex-snapshot

Quantum Chemistry Calculations for Metabolomics

inferred← citeshttps://doi.org/10.1038/s41467-020-15765-0openalex-snapshot

Highly parallel and efficient single cell mRNA sequencing with paired picoliter chambers

inferred← citeshttps://doi.org/10.1039/d1lc00607jopenalex-snapshot

Microfluidic single-cell transcriptomics: moving towards multimodal and spatiotemporal omics

inferred← citeshttps://doi.org/10.1039/d5lc00854aopenalex-snapshot

Single-cell protein profiling energized by microfluidic technology

inferred← citeshttps://doi.org/10.1093/advances/nmab014openalex-snapshot

Pro-biomics: Omics Technologies To Unravel the Role of Probiotics in Health and Disease

inferred← citeshttps://doi.org/10.1097/bs9.0000000000000072openalex-snapshot

SIEVE: identifying robust single cell variable genes for single-cell RNA sequencing data

inferred← citeshttps://doi.org/10.1111/cns.14717openalex-snapshot

Multi‐omics technologies and molecular biomarkers in brain tumor‐related epilepsy

inferred← citeshttps://doi.org/10.1134/s2079086424600073openalex-snapshot

Strategic Tasks and Prospects for the Development of the Resource Base of Healthcare and Health Saving through the Prism of Personalized and Precision Medicine

inferred← citeshttps://doi.org/10.1186/s43897-023-00067-yopenalex-snapshot

Application of single-cell multi-omics approaches in horticulture research

inferred← citeshttps://doi.org/10.12659/msm.931862openalex-snapshot

Applications of Single-Cell Sequencing in Dermatology

inferred← citeshttps://doi.org/10.1371/journal.pntd.0009892openalex-snapshot

Microarray profiling predicts early neurological and immune phenotypic traits in advance of CNS disease during disease progression in Trypanosoma. b. brucei infected CD1 mouse brains

inferred← citeshttps://doi.org/10.14218/erhm.2024.00006openalex-snapshot

Advances in the Clinical Application of High-throughput Proteomics

inferred← citeshttps://doi.org/10.31857/s0042132424020021openalex-snapshot

Strategic Tasks and Prospects for the Development of the Resource Base of Healthcare and Health Saving through the Prism of Personalized and Precision Medicine

inferred← citeshttps://doi.org/10.3389/fcell.2021.709183openalex-snapshot

Human Embryos, Induced Pluripotent Stem Cells, and Organoids: Models to Assess the Effects of Environmental Plastic Pollution

inferred← citeshttps://doi.org/10.3389/fcell.2026.1935200openalex-snapshot

Crosstalk between innate immune signaling pathways and integrated TLR, NLRP3 inflammasome, cGAS–STING, and NF-κB networks in sepsis

inferred← citeshttps://doi.org/10.3389/fcvm.2022.905151openalex-snapshot

Advances in application of single-cell RNA sequencing in cardiovascular research

inferred← citeshttps://doi.org/10.3389/fimmu.2025.1648987openalex-snapshot

Multi-omics analysis of the tumor microenvironment after metastasis: advancing toward personalized immunotherapy and molecular targeted strategies

inferred← citeshttps://doi.org/10.3389/fmicb.2026.1996773openalex-snapshot

Applications of single-cell RNA sequencing in fungal infections

inferred← citeshttps://doi.org/10.3389/fnins.2021.591122openalex-snapshot

Single-Cell Transcriptomics: Current Methods and Challenges in Data Acquisition and Analysis

inferred← citeshttps://doi.org/10.3389/fnmol.2023.1079529openalex-snapshot

cdh23 affects congenital hearing loss through regulating purine metabolism

inferred← citeshttps://doi.org/10.3390/app142210755openalex-snapshot

Omics-Integrated Approach (Metabolomics, Proteomics and Lipidomics) to Assess the Quality Control of Aquatic and Seafood Products

inferred← citeshttps://doi.org/10.3390/biology12101298openalex-snapshot

An Integrated Multi-Omics and Artificial Intelligence Framework for Advance Plant Phenotyping in Horticulture

inferred← citeshttps://doi.org/10.3390/biom11081111openalex-snapshot

Analyzing Modern Biomolecules: The Revolution of Nucleic-Acid Sequencing – Review

inferred← citeshttps://doi.org/10.3390/biomedicines13010167openalex-snapshot

From Serendipity to Precision: Integrating AI, Multi-Omics, and Human-Specific Models for Personalized Neuropsychiatric Care

inferred← citeshttps://doi.org/10.3390/cancers12123525openalex-snapshot

Magnetic Particles for CTC Enrichment

inferred← citeshttps://doi.org/10.3390/cimb46060345openalex-snapshot

Multi Omics Applications in Biological Systems

inferred← citeshttps://doi.org/10.3390/jpm12050669openalex-snapshot

A State-of-the-Art Roadmap for Biomarker-Driven Drug Development in the Era of Personalized Therapies

inferred← citeshttps://doi.org/10.3390/mi16030243openalex-snapshot

Polymerase Chain Reaction Chips for Biomarker Discovery and Validation in Drug Development

inferred← citeshttps://doi.org/10.3904/kjim.2020.415openalex-snapshot

Single-cell transcriptomics: a novel precision medicine technique in nephrology

inferred← citeshttps://doi.org/10.47570/joci.2020.005openalex-snapshot

Single cell genomics for cellular phenotyping: applications in brain disorder

inferred← citeshttps://doi.org/10.5772/intechopen.1013406openalex-snapshot

The State of the Art: Pharmacogenomics, Multi-Omics, and Translational Barriers in Antipsychotic Therapy

inferred← citeshttps://doi.org/10.70675/8104fba8z5c6cz4698z9c29zd8d7a0c50085openalex-snapshot

Micro-Magnetic-Tweezers : an innovative tool for high-throughput bio-separation in droplet microfluidics

inferred← citeshttps://doi.org/10.70675/9573e2e9zb2bbz45c3z8617z3b3c131fceeeopenalex-snapshot

Développement d'une approche innovante de génomique sur cellules uniques et application aux communautés bactériennes du sol

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