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Simulations reveal a balance between protein–protein and protein–lipid interactions during condensation on membrane surfaces

https://doi.org/10.1039/d5sc04862a
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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GROMACS: Fast, flexible, and free
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CHARMM‐GUI: A web‐based graphical user interface for CHARMM
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Ultra‐Stable Freestanding Lipid Membrane Array: Direct Visualization of Dynamic Membrane Remodeling with Cholesterol Transport and Enzymatic Reactions
inferredcites →https://doi.org/10.1016/j.bbapap.2019.05.001openalex-snapshot
Membrane interactions of intrinsically disordered proteins: The example of alpha-synuclein
inferredcites →https://doi.org/10.1016/j.bpj.2024.04.031openalex-snapshot
Protein condensates in the the secretory pathway: Unraveling biophysical interactions and function
inferredcites →https://doi.org/10.1016/j.cell.2018.12.035openalex-snapshot
Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates
inferredcites →https://doi.org/10.1016/j.cell.2019.10.011openalex-snapshot
Phase Separation of Zonula Occludens Proteins Drives Formation of Tight Junctions
inferredcites →https://doi.org/10.1016/j.molcel.2016.05.042openalex-snapshot
Sequence Determinants of Intracellular Phase Separation by Complex Coacervation of a Disordered Protein
inferredcites →https://doi.org/10.1016/j.molcel.2019.09.016openalex-snapshot
The Control Centers of Biomolecular Phase Separation: How Membrane Surfaces, PTMs, and Active Processes Regulate Condensation
inferredcites →https://doi.org/10.1016/j.softx.2015.06.001openalex-snapshot
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
inferredcites →https://doi.org/10.1016/s0962-8924(00)01907-3openalex-snapshot
Secretory granule biogenesis: rafting to the SNARE
inferredcites →https://doi.org/10.1021/acs.jctc.0c01064openalex-snapshot
Simulation of FUS Protein Condensates with an Adapted Coarse-Grained Model
inferredcites →https://doi.org/10.1021/acs.jctc.1c01042openalex-snapshot
Improving Martini 3 for Disordered and Multidomain Proteins
inferredcites →https://doi.org/10.1021/acs.jctc.2c00950openalex-snapshot
Scaling Protein–Water Interactions in the Martini 3 Coarse-Grained Force Field to Simulate Transmembrane Helix Dimers in Different Lipid Environments
inferredcites →https://doi.org/10.1021/acs.jctc.5b00209openalex-snapshot
Computational Lipidomics with insane : A Versatile Tool for Generating Custom Membranes for Molecular Simulations
inferredcites →https://doi.org/10.1021/acs.jctc.5b00513openalex-snapshot
CHARMM-GUI Martini Maker for Coarse-Grained Simulations with the Martini Force Field
inferredcites →https://doi.org/10.1021/cr400525mopenalex-snapshot
Classification of Intrinsically Disordered Regions and Proteins
inferredcites →https://doi.org/10.1021/jp071097fopenalex-snapshot
The MARTINI Force Field: Coarse Grained Model for Biomolecular Simulations
inferredcites →https://doi.org/10.1038/nchem.2803openalex-snapshot
Phase behaviour of disordered proteins underlying low density and high permeability of liquid organelles
inferredcites →https://doi.org/10.1038/nphys3532openalex-snapshot
Polymer physics of intracellular phase transitions
inferredcites →https://doi.org/10.1038/nrm3920openalex-snapshot
Intrinsically disordered proteins in cellular signalling and regulation
inferredcites →https://doi.org/10.1038/s41467-018-05403-1openalex-snapshot
Controllable protein phase separation and modular recruitment to form responsive membraneless organelles
inferredcites →https://doi.org/10.1038/s41467-021-21181-9openalex-snapshot
Reentrant liquid condensate phase of proteins is stabilized by hydrophobic and non-ionic interactions
inferredcites →https://doi.org/10.1038/s41467-022-35093-9openalex-snapshot
Discrete LAT condensates encode antigen information from single pMHC:TCR binding events
inferredcites →https://doi.org/10.1038/s41467-023-35847-zopenalex-snapshot
Different pathways for engulfment and endocytosis of liquid droplets by nanovesicles
inferredcites →https://doi.org/10.1038/s41467-023-41709-5openalex-snapshot
Biomolecular condensates modulate membrane lipid packing and hydration
inferredcites →https://doi.org/10.1038/s41467-023-43332-wopenalex-snapshot
Transmembrane coupling of liquid-like protein condensates
inferredcites →https://doi.org/10.1038/s41556-021-00646-5openalex-snapshot
Liquid-like protein interactions catalyse assembly of endocytic vesicles
inferredcites →https://doi.org/10.1038/s41556-022-00882-3openalex-snapshot
Membrane surfaces regulate assembly of ribonucleoprotein condensates
inferredcites →https://doi.org/10.1038/s41580-023-00673-0openalex-snapshot
The molecular basis for cellular function of intrinsically disordered protein regions
inferredcites →https://doi.org/10.1038/s41586-021-03819-2openalex-snapshot
Highly accurate protein structure prediction with AlphaFold
inferredcites →https://doi.org/10.1038/s41586-024-07726-0openalex-snapshot
Membrane prewetting by condensates promotes tight-junction belt formation
inferredcites →https://doi.org/10.1038/s41592-021-01098-3openalex-snapshot
Martini 3: a general purpose force field for coarse-grained molecular dynamics
inferredcites →https://doi.org/10.1039/c3cs60093aopenalex-snapshot
Perspective on the Martini model
inferredcites →https://doi.org/10.1039/d2sc02013kopenalex-snapshot
Coacervation of poly-electrolytes in the presence of lipid bilayers: mutual alteration of structure and morphology
inferredcites →https://doi.org/10.1039/d3sm00131hopenalex-snapshot
Membrane curvature sensing by model biomolecular condensates
inferredcites →https://doi.org/10.1042/bst20200467openalex-snapshot
Intrinsically disordered proteins and membranes: a marriage of convenience for cell signalling?
inferredcites →https://doi.org/10.1073/pnas.1504822112openalex-snapshot
The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics
inferredcites →https://doi.org/10.1073/pnas.1709120114openalex-snapshot
TFG facilitates outer coat disassembly on COPII transport carriers to promote tethering and fusion with ER–Golgi intermediate compartments
inferredcites →https://doi.org/10.1073/pnas.2017435118openalex-snapshot
Membrane bending by protein phase separation
inferredcites →https://doi.org/10.1073/pnas.2122531119openalex-snapshot
A two-component protein condensate of the EGFR cytoplasmic tail and Grb2 regulates Ras activation by SOS at the membrane
inferredcites →https://doi.org/10.1083/jcb.202206132openalex-snapshot
Liquid–liquid phase separation facilitates the biogenesis of secretory storage granules
inferredcites →https://doi.org/10.1126/sciadv.adf6205openalex-snapshot
Coupling of protein condensates to ordered lipid domains determines functional membrane organization
inferredcites →https://doi.org/10.1126/science.aad9964openalex-snapshot
Phase separation of signaling molecules promotes T cell receptor signal transduction
inferredcites →https://doi.org/10.1126/science.aaf4382openalex-snapshot
Liquid phase condensation in cell physiology and disease
inferredcites →https://doi.org/10.1146/annurev-physchem-071819-113553openalex-snapshot
Biomolecular Phase Separation: From Molecular Driving Forces to Macroscopic Properties
inferredcites →https://doi.org/10.15252/embj.201489032openalex-snapshot
TFG clusters COPII‐coated transport carriers and promotes early secretory pathway organization
inferredcites →https://doi.org/10.7554/elife.72865openalex-snapshot
Condensation of Ede1 promotes the initiation of endocytosis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← backgroundhttps://doi.org/10.5281/zenodo.15785473zenodo-depositor-declared
inferred← citeshttps://doi.org/10.1002/advs.76899openalex-snapshot
Lipidomic Profile Reconstruction of Therapeutic Membrane Targets Using Physics‐Based Optimization with Limited Activity Data
inferred← citeshttps://doi.org/10.1016/j.lwt.2025.118819openalex-snapshot
Effects of ripening conditions on protein conformation and quality of frozen tofu prepared by different coagulants
inferred← citeshttps://doi.org/10.1021/acs.jafc.6c07756openalex-snapshot
Membrane Phase Separation: An Emerging Biophysical Perspective on Food-Derived Bioactive Peptides
inferred← citeshttps://doi.org/10.1021/jacsau.6c01222openalex-snapshot
Membranes Decouple α-Synuclein Surface Assembly and Kinetic Restriction from Persistent Amyloid-like Intermolecular Organization
inferred← citeshttps://doi.org/10.1038/s42004-026-02011-9openalex-snapshot
Origin of the ionic-strength dependent reentrant behavior in the liquid-liquid phase separation of uncharged intrinsically disordered proteins
inferred← citeshttps://doi.org/10.3389/frbis.2026.1860065openalex-snapshot
Biomolecular condensation meets membrane biophysics: from interfacial physical principles to emerging therapeutic opportunities
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