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Environmental stress activation of plant long-terminal repeat retrotransposons
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Origin and evolution of retroelements based upon their reverse transcriptase sequences.
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Specific expression of the tobacco Tnt1 retrotransposon in protoplasts.
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A flower‐specific Myb protein activates transcription of phenylpropanoid biosynthetic genes.
inferredcites →https://doi.org/10.1007/978-94-011-4898-6_24openalex-snapshot
The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses
inferredcites →https://doi.org/10.1007/bf00019563openalex-snapshot
Retrotransposon BARE-1 is a major, dispersed component of the barley (Hordeum vulgare L.) genome
inferredcites →https://doi.org/10.1007/bf00021791openalex-snapshot
The BARE-1 retrotransposon is transcribed in barley from an LTR promoter active in transient assays
inferredcites →https://doi.org/10.1007/bf00027369openalex-snapshot
BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.)
inferredcites →https://doi.org/10.1007/bf00039623openalex-snapshot
A 61 bp enhancer element of the tobacco β-1,3-glucanase B gene interacts with one or more regulated nuclear proteins
inferredcites →https://doi.org/10.1007/bf00283267openalex-snapshot
Isolation of an osmotic stress- and abscisic acid-induced gene encoding an acidic endochitinase from Lycopersicon chilense
inferredcites →https://doi.org/10.1007/s00122-004-1618-8openalex-snapshot
Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions
inferredcites →https://doi.org/10.1007/s00122-006-0490-0openalex-snapshot
Retrotransposon and gene activation in wheat in response to mycotoxigenic and non-mycotoxigenic-associated Fusarium stress
inferredcites →https://doi.org/10.1007/s00239-004-0168-7openalex-snapshot
Variability, Recombination, and Mosaic Evolution of the Barley BARE-1 Retrotransposon
inferredcites →https://doi.org/10.1007/s00299-007-0375-yopenalex-snapshot
The promoter of the TLC1.1 retrotransposon from Solanum chilense is activated by multiple stress-related signaling molecules
inferredcites →https://doi.org/10.1007/s00438-006-0141-9openalex-snapshot
Epigenetic regulation of the rice retrotransposon Tos17
inferredcites →https://doi.org/10.1007/s004380100560openalex-snapshot
Heat shock, copper sulfate and oxidative stress activate the retrotransposon MAGGY resident in the plant pathogenic fungus Magnaporthe grisea
inferredcites →https://doi.org/10.1007/s11103-007-9258-4openalex-snapshot
Reme1, a Copia retrotransposon in melon, is transcriptionally induced by UV light
inferredcites →https://doi.org/10.1007/s11103-011-9804-yopenalex-snapshot
Retrotransposon- and microsatellite sequence-associated genomic changes in early generations of a newly synthesized allotetraploid Cucumis × hytivus Chen & Kirkbride
inferredcites →https://doi.org/10.1016/0168-9525(93)90105-qopenalex-snapshot
Yeast retrotransposons and tRNAs
inferredcites →https://doi.org/10.1016/j.gene.2005.09.003openalex-snapshot
Transcription of two human genes from a bidirectional endogenous retrovirus promoter
inferredcites →https://doi.org/10.1016/j.gene.2006.09.009openalex-snapshot
Life without GAG: The BARE-2 retrotransposon as a parasite's parasite
inferredcites →https://doi.org/10.1016/j.jplph.2009.06.007openalex-snapshot
The spaceflight environment can induce transpositional activation of multiple endogenous transposable elements in a genotype-dependent manner in rice
inferredcites →https://doi.org/10.1016/j.plasmid.2012.08.001openalex-snapshot
Transposable elements domesticated and neofunctionalized by eukaryotic genomes
inferredcites →https://doi.org/10.1016/s0169-5347(99)01817-0openalex-snapshot
Transposable elements and host genome evolution
inferredcites →https://doi.org/10.1016/s0378-1119(03)00557-2openalex-snapshot
Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes
inferredcites →https://doi.org/10.1016/s0378-1119(97)00203-5openalex-snapshot
Developmental expression analysis of the 1731 retrotransposon reveals an enhancement of Gag–Pol frameshifting in males of Drosophila melanogaster
inferredcites →https://doi.org/10.1016/s0923-2508(99)00116-3openalex-snapshot
Three views of microbial genomes
inferredcites →https://doi.org/10.1016/s0960-9822(02)00638-3openalex-snapshot
Plant retrotransposons: Turned on by stress
inferredcites →https://doi.org/10.1016/s1360-1385(01)02105-7openalex-snapshot
Silencing of transposable elements in plants
inferredcites →https://doi.org/10.1016/s1360-1385(98)01232-1openalex-snapshot
Activation of plant retrotransposons under stress conditions
inferredcites →https://doi.org/10.1016/s1369-5266(03)00092-xopenalex-snapshot
Regulatory network of gene expression in the drought and cold stress responses
inferredcites →https://doi.org/10.1023/a:1003929913398openalex-snapshot
Structure, functionality, and evolution of the BARE-1 retrotransposon of barley
inferredcites →https://doi.org/10.1023/a:1005826605598openalex-snapshot
In vivo characterization of transcriptional regulatory sequences involved in the defence-associated expression of the tobacco retrotransposon Tnt1
inferredcites →https://doi.org/10.1023/a:1005932620374openalex-snapshot
U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize
inferredcites →https://doi.org/10.1023/a:1018302216927openalex-snapshot
The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses
inferredcites →https://doi.org/10.1023/a:1022385104386openalex-snapshot
Ozone-induced gene expression occurs via ethylene-dependent and -independent signalling
inferredcites →https://doi.org/10.1038/nature02651openalex-snapshot
Role of transposable elements in heterochromatin and epigenetic control
inferredcites →https://doi.org/10.1038/nature02698openalex-snapshot
Evolutionary changes in cis and trans gene regulation
inferredcites →https://doi.org/10.1038/nature08328openalex-snapshot
Selective epigenetic control of retrotransposition in Arabidopsis
inferredcites →https://doi.org/10.1038/nature10555openalex-snapshot
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
inferredcites →https://doi.org/10.1038/ng1063openalex-snapshot
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
inferredcites →https://doi.org/10.1038/ng1259openalex-snapshot
Human Alu element retrotransposition induced by genotoxic stress
inferredcites →https://doi.org/10.1038/nrg2719openalex-snapshot
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
inferredcites →https://doi.org/10.1038/nrg793openalex-snapshot
Plant transposable elements: where genetics meets genomics
inferredcites →https://doi.org/10.1038/nrm3152openalex-snapshot
Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing
inferredcites →https://doi.org/10.1038/sj.hdy.6800903openalex-snapshot
Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome
inferredcites →https://doi.org/10.1046/j.1365-313x.1993.03040563.xopenalex-snapshot
Salicylic acid‐inducible binding of a tobacco nuclear protein to a 10 bp sequence which is highly conserved amongst stress‐inducible genes
inferredcites →https://doi.org/10.1046/j.1365-313x.1998.00071.xopenalex-snapshot
Gypsy‐like retrotransposons are widespread in the plant kingdom
inferredcites →https://doi.org/10.1046/j.1365-313x.1999.00460.xopenalex-snapshot
A 13‐bp cis‐regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors
inferredcites →https://doi.org/10.1046/j.1365-313x.2001.01141.xopenalex-snapshot
The mobility of the tobacco Tnt1 retrotransposon correlates with its transcriptional activation by fungal factors
inferredcites →https://doi.org/10.1046/j.1365-313x.2001.01151.xopenalex-snapshot
Linear DNA intermediates of the Tto1 retrotransposon in Gag particles accumulated in stressed tobacco and Arabidopsis thaliana
inferredcites →https://doi.org/10.1046/j.1365-313x.2002.01383.xopenalex-snapshot
Genotype‐dependent transcriptional activation of novel repetitive elements during cold acclimation of alfalfa (Medicago sativa)
inferredcites →https://doi.org/10.1046/j.1365-313x.2003.01701.xopenalex-snapshot
Efficient transposition of the Tnt1 tobacco retrotransposon in the model legume Medicago truncatula
inferredcites →https://doi.org/10.1051/jbio/2004198040425openalex-snapshot
Activation de rétrotransposons de plantes par le stress et impact sur les génomes hôtes
inferredcites →https://doi.org/10.1073/pnas.0908305106openalex-snapshot
Posttranslational interference of Ty1 retrotransposition by antisense RNAs
inferredcites →https://doi.org/10.1073/pnas.110587497openalex-snapshot
Genome evolution of wild barley ( Hordeum spontaneum ) by BARE -1 retrotransposon dynamics in response to sharp microclimatic divergence
inferredcites →https://doi.org/10.1073/pnas.1112704108openalex-snapshot
A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice
inferredcites →https://doi.org/10.1073/pnas.89.15.7124openalex-snapshot
copia-like retrotransposons are ubiquitous among plants.
inferredcites →https://doi.org/10.1073/pnas.91.25.11792openalex-snapshot
Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expression.
inferredcites →https://doi.org/10.1073/pnas.93.15.7783openalex-snapshot
Retrotransposons of rice involved in mutations induced by tissue culture.
inferredcites →https://doi.org/10.1073/pnas.97.13.7376openalex-snapshot
Transposon diversity in Arabidopsis thaliana
inferredcites →https://doi.org/10.1093/genetics/160.4.1651openalex-snapshot
Gene Loss, Silencing and Activation in a Newly Synthesized Wheat Allotetraploid
inferredcites →https://doi.org/10.1093/nar/18.10.2947openalex-snapshot
The retrotransposonCopiacontrols the relative levels of its gene products post-transcriptionally be differential expression from its two major mRNAs
inferredcites →https://doi.org/10.1093/nar/20.14.3639openalex-snapshot
Ty1–copiagroup retrotransposons are ubiquitous and heterogeneous in higher plants
inferredcites →https://doi.org/10.1093/nar/21.9.2087openalex-snapshot
Characterisation of LTR sequences involved in the protoplast specific expression of the tobacco Tnt1 retrotransposon
inferredcites →https://doi.org/10.1093/oxfordjournals.pcp.a029092openalex-snapshot
Combined Effects of Multiple cis-Acting Elements in Elicitor-Mediated Activation of PSCHS1 Gene
inferredcites →https://doi.org/10.1101/gr.6214107openalex-snapshot
Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families
inferredcites →https://doi.org/10.1101/sqb.1984.049.01.038openalex-snapshot
Endogenous Transposable Elements Associated with Virus Infection in Maize
inferredcites →https://doi.org/10.1104/pp.105.059766openalex-snapshot
Involvement of Ethylene in Stress-Induced Expression of the TLC1.1 Retrotransposon from Lycopersicon chilense Dun.
inferredcites →https://doi.org/10.1104/pp.113.216481openalex-snapshot
The Initiation of Epigenetic Silencing of Active Transposable Elements Is Triggered by RDR6 and 21-22 Nucleotide Small Interfering RNAs
inferredcites →https://doi.org/10.1104/pp.127.1.212openalex-snapshot
Three Tnt1 Subfamilies Show Different Stress-Associated Patterns of Expression in Tobacco. Consequences for Retrotransposon Control and Evolution in Plants
inferredcites →https://doi.org/10.1105/tpc.11.9.1769openalex-snapshot
Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum
inferredcites →https://doi.org/10.1105/tpc.111.095232openalex-snapshot
Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges
inferredcites →https://doi.org/10.1105/tpc.12.3.357openalex-snapshot
Silencing of Retrotransposons in Arabidopsis and Reactivation by the ddm1 Mutation
inferredcites →https://doi.org/10.1111/j.1365-313x.2005.02534.xopenalex-snapshot
LORE1, an active low‐copy‐number TY3‐gypsy retrotransposon family in the model legume Lotus japonicus
inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03572.xopenalex-snapshot
BARE retrotransposons produce multiple groups of rarely polyadenylated transcripts from two differentially regulated promoters
inferredcites →https://doi.org/10.1126/science.1095011openalex-snapshot
Retrotransposon-Induced Mutations in Grape Skin Color
inferredcites →https://doi.org/10.1126/science.15739260openalex-snapshot
The Significance of Responses of the Genome to Challenge
inferredcites →https://doi.org/10.1128/jvi.75.4.1790-1797.2001openalex-snapshot
Expression and Processing of Proteins Encoded by the Saccharomyces Retrotransposon Ty5
inferredcites →https://doi.org/10.1128/mcb.01888-06openalex-snapshot
Cell Divisions Are Required for L1 Retrotransposition
inferredcites →https://doi.org/10.1128/mcb.25.17.7459-7472.2005openalex-snapshot
Severe Adenine Starvation Activates Ty1 Transcription and Retrotransposition in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1146/annurev.arplant.58.032806.103754openalex-snapshot
Alternative Splicing of Pre-Messenger RNAs in Plants in the Genomic Era
inferredcites →https://doi.org/10.1146/annurev.genet.33.1.479openalex-snapshot
Plant Retrotransposons
inferredcites →https://doi.org/10.1146/annurev.genom.8.080706.092416openalex-snapshot
Repetitive Sequences in Complex Genomes: Structure and Evolution
inferredcites →https://doi.org/10.1155/2012/874743openalex-snapshot
Evolutionary History of LTR Retrotransposon Chromodomains in Plants
inferredcites →https://doi.org/10.1159/000084940openalex-snapshot
Happy together: the life and times of Ty retrotransposons and their hosts
inferredcites →https://doi.org/10.1159/000084957openalex-snapshot
Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae
inferredcites →https://doi.org/10.1186/1742-4690-3-44openalex-snapshot
Transactivation of elements in the human endogenous retrovirus W family by viral infection
inferredcites →https://doi.org/10.1186/1742-4690-6-30openalex-snapshot
A dose-effect relationship for deltaretrovirus-dependent leukemogenesis in sheep
inferredcites →https://doi.org/10.1186/gb-2004-5-6-225openalex-snapshot
The diversity of LTR retrotransposons.
inferredcites →https://doi.org/10.1371/journal.pgen.1000868openalex-snapshot
Derepression of the Plant Chromovirus LORE1 Induces Germline Transposition in Regenerated Plants
inferredcites →https://doi.org/10.1371/journal.pone.0040203openalex-snapshot
Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes
inferredcites →https://doi.org/10.2165/00129785-200202010-00003openalex-snapshot
Mobile Genetic Element Activation and Genotoxic Cancer Therapy
inferredcites →https://doi.org/10.3835/plantgenome2013.04.0009openalex-snapshot
Activation of an Endogenous Retrotransposon Associated with Epigenetic Changes in Lotus japonicus : A Tool for Functional Genomics in Legumes
inferredcites →https://doi.org/10.5120/8308-1772openalex-snapshot
Gene-Tracer: Algorithm Tracing Genes Modification from Ancestors through Offsprings
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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How Does Adaptive Radiation Impact Repeatome Evolution? Comparative Genomic Analysis of Acacia Subg. Phyllodineae (Dc.) Ser. (Leguminosae Juss.)
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The mechanisms underpinning lateral gene transfer between grasses
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Mobile Genetic Elements and Abiotic Stress Tolerance
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The role of LTR retrotransposons in plant genetic engineering: how to control their transposition in the genome
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LTR-TEs abundance, timing and mobility in Solanum commersonii and S. tuberosum genomes following cold-stress conditions
inferred← citeshttps://doi.org/10.1007/s00438-016-1235-7openalex-snapshot
Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories
inferred← citeshttps://doi.org/10.1007/s10722-020-00981-wopenalex-snapshot
Evaluation of wheat (Triticum aestivum L.) salt stress tolerance using physiological parameters and retrotransposon-based markers
inferred← citeshttps://doi.org/10.1007/s11240-016-0958-9openalex-snapshot
Introgression of bacterial wilt resistance from Solanum melongena to S . t uberosum through asymmetric protoplast fusion
inferred← citeshttps://doi.org/10.1007/s12041-016-0702-6openalex-snapshot
Useful parasites: the evolutionary biology and biotechnology applications of transposable elements
inferred← citeshttps://doi.org/10.1007/s13369-017-2697-6openalex-snapshot
Aluminum-Induced Changes on DNA Damage, DNA Methylation and LTR Retrotransposon Polymorphism in Maize
inferred← citeshttps://doi.org/10.1007/s42976-023-00486-zopenalex-snapshot
Investigation of Tos17 LTR retrotransposon movements in rice (Oryza sativa L.) under nickel and boron stress
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Zinc priming and foliar application enhances photoprotection mechanisms in drought-stressed wheat plants during anthesis
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Heterochromatic and cytomolecular diversification in the Caesalpinia group (Leguminosae): Relationships between phylogenetic and cytogeographical data
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Karyological traits related to phylogenetic signal and environmental conditions within the Hymenaea clade (Leguminosae, Detarioideae)
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DKRE1—The first full-length Ty1-copia-like retrotransposon in persimmon: Isolation, characteristic and potential involvement in occurrence of bud mutations
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Transcriptomic profiles and diagnostic biomarkers in the Mediterranean seagrasses Posidonia oceanica and Cymodocea nodosa reveal mechanistic insights of adaptative strategies upon desalination brine stress
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Wheat omics: Classical breeding to new breeding technologies
inferred← citeshttps://doi.org/10.1038/s41598-017-08194-5openalex-snapshot
Rapid amplification of four retrotransposon families promoted speciation and genome size expansion in the genus Panax
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Physiological, epigenetic and genetic regulation in some olive cultivars under salt stress
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The physiology of plants in the context of space exploration
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Retrotransposon-based molecular markers for assessment of genomic diversity
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Epigenetic changes and their relationship to somaclonal variation: a need to monitor the micropropagation of plantation crops
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Inter-retrotransposon amplified polymorphism markers revealed long terminal repeat retrotransposon insertion polymorphism in flax cultivated on the experimental fields around Chernobyl
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Short-term mutagenicity test by using IRAP molecular marker in rice grown under herbicide treatment
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Plant Prionome maps reveal specific roles of prion-like proteins in stress and memory
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Sequencing a botanical monument: a chromosome-level assembly of the 400-year-old Goethe’s Palm ( Chamaerops humilis L.) at the Botanical Garden of the University of Padua (Italy)
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Structural variation drives rhizome innovation and adaptive divergence in sister Medicago species
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A highly specific micro RNA ‐mediated mechanism silences LTR retrotransposons of strawberry
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Genome-wide characterization of LTR retrotransposons in the non-model deep-sea annelid Lamellibrachia luymesi
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Integrative cross-platform transcriptomic analysis coupled with machine learning identifies candidate biomarkers of abiotic stress resilience in Arabidopsis thaliana
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Prion-like proteins reveal crosstalk between Stress and Memory pathways in Plants
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The Rule of Salinity Stress in Activation of Retrotransposition Rate in some Bread Wheat Genotypes.
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Bridging the Gap Between Environmental Adversity and Neuropsychiatric Disorders: The Role of Transposable Elements
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Complex Networks of Prion-Like Proteins Reveal Cross Talk Between Stress and Memory Pathways in Plants
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InpactorDB: A Classified Lineage-Level Plant LTR Retrotransposon Reference Library for Free-Alignment Methods Based on Machine Learning
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Retrotransposons in Plant Genomes: Structure, Identification, and Classification through Bioinformatics and Machine Learning
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Genome-wide analysis of salinity-stress induced DNA methylation alterations in cotton (Gossypium hirsutum L.) using the Me-DIP sequencing technology
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Transcriptional profiling of Impatiens walleriana genes through different stages of downy mildew infection reveals novel genes involved in disease susceptibility
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Radioactive contamination in Chernobyl and (epi)genetic stability of plants – A review
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Additional file 2 of Genome-wide characterization of LTR retrotransposons in the non-model deep-sea annelid Lamellibrachia luymesi
inferred← citeshttps://doi.org/10.6084/m9.figshare.14825944openalex-snapshot
Additional file 3 of Genome-wide characterization of LTR retrotransposons in the non-model deep-sea annelid Lamellibrachia luymesi
inferred← citeshttps://doi.org/10.6084/m9.figshare.14825947openalex-snapshot
Additional file 4 of Genome-wide characterization of LTR retrotransposons in the non-model deep-sea annelid Lamellibrachia luymesi
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Activation of plant LTR-retrotransposons under in vitro culture stress
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