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Genetic analyses reveal cryptic diversity in the widely distributed Styela canopus (Ascidiacea : Styelidae)
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description
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Investigating the widespread introduction of a tropical marine fouling species
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Problems and Questions Posed by Cryptic Species. A Framework to Guide Future Studies
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Molecular genetic analyses of species boundaries in the sea
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On transition bias in mitochondrial genes of pocket gophers
inferredcites →https://doi.org/10.1007/bf02407301openalex-snapshot
Codons AGA and AGG are read as glycine in ascidian mitochondria
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Genealogical relationships within and among shallow-water Ciona species (Ascidiacea)
inferredcites →https://doi.org/10.1007/s00227-012-1898-5openalex-snapshot
Field identification of ‘types’ A and B of the ascidian Ciona intestinalis in a region of sympatry
inferredcites →https://doi.org/10.1007/s002270100587openalex-snapshot
Cryptic species of Clavelina (Ascidiacea) in two different habitats: harbours and rocky littoral zones in the northwestern Mediterranean
inferredcites →https://doi.org/10.1007/s00239-005-0009-3openalex-snapshot
Genomic Approaches Reveal Unexpected Genetic Divergence Within Ciona intestinalis
inferredcites →https://doi.org/10.1007/s10126-002-0029-6openalex-snapshot
Oligonucleotide Primers for PCR Amplification of Coelomate Introns
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Environmental variables, habitat discontinuity and life history shaping the genetic structure of Pomatoschistus marmoratus
inferredcites →https://doi.org/10.1007/s10709-010-9472-xopenalex-snapshot
Genetic diversity and connectivity remain high in Holothuria polii (Delle Chiaje 1823) across a coastal lagoon-open sea environmental gradient
inferredcites →https://doi.org/10.1007/s12526-017-0699-yopenalex-snapshot
The invasive ascidian Ciona robusta recorded from a Red Sea marina
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Methods for delimiting species via population genetics and phylogenetics using genotype data
inferredcites →https://doi.org/10.1016/b978-0-12-398760-0.50026-2openalex-snapshot
PHYLOGENETIC RELATIONSHIPS OF MITOCHONDRIAL DNA UNDER VARIOUS DEMOGRAPHIC MODELS OF SPECIATION11Work was supported by an NIH predoctoral fellowship to JEN, and by NSF Grant BSR-8217291.
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Cryptic species as a window on diversity and conservation
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Paradox lost: genetic diversity and the success of aquatic invasions
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Ascidian molecular phylogeny inferred from mtDNA data with emphasis on the Aplousobranchiata
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Phylogeny of the families Pyuridae and Styelidae (Stolidobranchiata, Ascidiacea) inferred from mitochondrial and nuclear DNA sequences
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Polymorphism and divergence within the ascidian genus Ciona
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Reconstitution and characterization of the adenine nucleotide transporter derived from bovine heart mitochondria.
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Mitochondrial pseudogenes: evolution's misplaced witnesses
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Phylogenetics and speciation
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Does parental divergence predict reproductive compatibility?
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An index of substitution saturation and its application
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Assessing substitution saturation with DAMBE
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Two bovine genes for mitochondrial ADP/ATP translocase expressed differently in various tissues
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Molecular genetic analyses of species boundaries in the sea
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Characterising invasion processes with genetic data: an Atlantic clade of Clavelina lepadiformis (Ascidiacea) introduced into Mediterranean harbours
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On the comparison of population-level estimates of haplotype and nucleotide diversity: a case study using the gene cox1 in animals
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jModelTest 2: more models, new heuristics and parallel computing
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Cryptic speciation or global spread? The case of a cosmopolitan marine invertebrate with limited dispersal capabilities
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High genetic diversity and absence of founder effects in a worldwide aquatic invader
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TCS: a computer program to estimate gene genealogies
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The genic view of the process of speciation
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Looking for morphological evidence of cryptic species in Asterina Nardo, 1834 (Echinodermata: Asteroidea). The redescription of Asterina pancerii (Gasco, 1870) and the description of two new species
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Cryptic speciation in a model invertebrate chordate
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Bayesian species delimitation using multilocus sequence data
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Multispecies coalescent delimits structure, not species
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Rapid evolution of animal mitochondrial DNA.
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Possibility of extensive neutral evolution under stabilizing selection with special reference to nonrandom usage of synonymous codons.
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Frequentist Properties of Bayesian Posterior Probabilities of Phylogenetic Trees Under Simple and Complex Substitution Models
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Sequence-Based Species Delimitation for the DNA Taxonomy of Undescribed Insects
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A New Statistical Method for Haplotype Reconstruction from Population Data
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A Comparison of Bayesian Methods for Haplotype Reconstruction from Population Genotype Data
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The Impact of Species Concept on Biodiversity Studies
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MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
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RDP: detection of recombination amongst aligned sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btp187openalex-snapshot
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
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A general species delimitation method with applications to phylogenetic placements
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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The BPP program for species tree estimation and species delimitation
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Ascidian Mitogenomics: Comparison of Evolutionary Rates in Closely Related Taxa Provides Evidence of Ongoing Speciation Events
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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
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A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation.
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Genetic Differentiation and Estimation of Gene Flow from F -Statistics Under Isolation by Distance
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Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution
inferredcites →https://doi.org/10.1093/molbev/mst066openalex-snapshot
Crossing the Species Barrier: Genomic Hotspots of Introgression between Two Highly Divergent Ciona intestinalis Species
inferredcites →https://doi.org/10.1093/nar/27.12.2554openalex-snapshot
An extra tRNAGly(U*CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040023openalex-snapshot
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.
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Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales.
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Testing a molecular protocol to monitor the presence of golden mussel larvae (Limnoperna fortunei) in plankton samples
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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
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Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets
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Nomenclature for the Nameless: A Proposal for an Integrative Molecular Taxonomy of Cryptic Diversity Exemplified by Planktonic Foraminifera
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Editorial: A home for virology, ecology, epidemiology, and evolutionary biology
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RDP4: Detection and analysis of recombination patterns in virus genomes
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Toward a resolution of the cosmopolitanBotryllus schlosserispecies complex (Ascidiacea, Styelidae): mitogenomics and morphology of clade E (Botryllus gaiae)
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Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata
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Multilocus genetic analyses differentiate between widespread and spatially restricted cryptic species in a model ascidian
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Creating the CIPRES Science Gateway for inference of large phylogenetic trees
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TCS: estimating gene genealogies
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A new look at the statistical model identification
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DNA barcode‐based delineation of putative species: efficient start for taxonomic workflows
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Phylogeography and speciation of colour morphs in the colonial ascidian Pseudodistoma crucigaster
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Genetic structure of the star sea squirt, Botryllus schlosseri, introduced in southern European harbours
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Invasion genetics of the Ciona intestinalis species complex: from regional endemism to global homogeneity
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ABGD, Automatic Barcode Gap Discovery for primary species delimitation
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Expression of a Gene for Major Mitochondrial Protein, ADP/ATP Translocase, during Embryogenesis in the Ascidian Halocynthia roretzi
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Deciphering the products of evolution at the species level: the need for an integrative taxonomy
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Cryptic speciation and genetic structure of widely distributed brittle stars (Ophiuroidea) in Europe
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DNA barcoding using chitons (genus Mopalia)
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Phylogeography of the widespread marine invader Microcosmus squamiger (Ascidiacea) reveals high genetic diversity of introduced populations and non‐independent colonizations
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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
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AN EXACT TEST FOR POPULATION DIFFERENTIATION
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INTROGRESSION DESPITE SUBSTANTIAL DIVERGENCE IN A BROADCAST SPAWNING MARINE INVERTEBRATE
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Identifying sharks with DNA barcodes: assessing the utility of a nucleotide diagnostic approach
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Mitonuclear discordance in genetic structure across the Atlantic/Indian Ocean biogeographical transition zone
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The detection of disease clustering and a generalized regression approach.
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Morphological evidence that the molecularly determinedCiona intestinalistype A and type B are different species:Ciona robustaandCiona intestinalis
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How to fail at species delimitation
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Species are hypotheses: avoid connectivity assessments based on pillars of sand
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Cryptic diversity in coastal Australasia: a morphological and mitonuclear genetic analysis of habitat-forming sibling species
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Species delimitation for cryptic species complexes: case study ofPyramidula(Gastropoda, Pulmonata)
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Morphological assessment of the Octopus vulgaris species complex evaluated in light of molecular‐based phylogenetic inferences
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Cryptic species and colonization processes in Ophryotrocha (Annelida, Dorvilleidae) inhabiting vertebrate remains in the shallow‐water Mediterranean
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External diversity is restrained by internal conservatism: New nudibranch mollusc contributes to the cryptic species problem
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Pliocene closing of the Isthmus of Panama, based on biostratigraphic evidence from nearby Pacific Ocean and Caribbean Sea cores
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Local Adaptation in Marine Invertebrates
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GENETIC DIVERGENCE, REPRODUCTIVE ISOLATION, AND MARINE SPECIATION
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A revision of the Pyura stolonifera species complex (Tunicata, Ascidiacea), with a description of a new species from Australia
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Arlequin (version 3.0): An integrated software package for population genetics data analysis
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Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data
inferredcites →https://doi.org/10.1186/1471-2148-10-118openalex-snapshot
Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation
inferredcites →https://doi.org/10.1186/1471-2148-11-176openalex-snapshot
"Nested" cryptic diversity in a widespread marine ecosystem engineer: a challenge for detecting biological invasions
inferredcites →https://doi.org/10.1186/1471-2148-12-245openalex-snapshot
Barcoding against a paradox? Combined molecular species delineations reveal multiple cryptic lineages in elusive meiofaunal sea slugs
inferredcites →https://doi.org/10.1186/1471-2148-7-121openalex-snapshot
Cryptic animal species are homogeneously distributed among taxa and biogeographical regions
inferredcites →https://doi.org/10.1186/1471-2156-15-61openalex-snapshot
Private haplotypes can reveal local adaptation
inferredcites →https://doi.org/10.1186/1742-9994-10-59openalex-snapshot
How to describe a cryptic species? Practical challenges of molecular taxonomy
inferredcites →https://doi.org/10.1186/jbiol60openalex-snapshot
Cryptic biodiversity in a changing world
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Nonindigenous Ascidians in Tropical Waters
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BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
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The Whereabouts of an Ancient Wanderer: Global Phylogeography of the Solitary Ascidian Styela plicata
inferredcites →https://doi.org/10.1371/journal.pone.0122879openalex-snapshot
Morphological Differences between Larvae of the Ciona intestinalis Species Complex: Hints for a Valid Taxonomic Definition of Distinct Species
inferredcites →https://doi.org/10.1371/journal.pone.0169944openalex-snapshot
Origin and Dispersal History of Two Colonial Ascidian Clades in the Botryllus schlosseri Species Complex
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BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT
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Improved Reversible Jump Algorithms for Bayesian Species Delimitation
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Table 1 in A new Gammarus species from Xinjiang Uygur Autonomous Region (China) with a key to Xinjiang freshwater gammarids (Crustacea, Amphipoda, Gammaridae)
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Mémoires sur les animaux sans vertèbres. *2e partie*Description et classification des animaux invertébrés, non articulés, connus sous les noms de mollusques, de radiaires, de polypes, etc
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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A synopsis of Tunicata biodiversity in Brazil
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Hurricane events facilitate the dominance of introduced invertebrate species in harbors
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Genetic diversity in theDiplosoma listerianumcomplex (Ascidiacea: Didemnidae) from the Western Atlantic
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Challenge from nomenclature changes: the case of ascidian biodiversity
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Unravelling the biodiversity of Australian salt lakes—molecular phylogeny of Mytilocypridinae giant ostracods (Cyprididae)
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Fouling invertebrates from PVC plates at Chahué Marina, Oaxaca, Southern Pacific coast of Mexico
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Hidden diversity and distributions of ascidian species (Tunicata: Ascidiacea) in Rio de Janeiro revealed by scientific collections
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The Miseno Lake (Central-Western Mediterranean Sea): An Overlooked Reservoir of Non-Indigenous and Cryptogenic Ascidians in a Marine Reserve
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Taxonomic identity of Distaplia stylifera (Tunicata, Ascidiacea), a new arrival to the eastern Pacific displaying invasive behavior in the Gulf of California, Mexico
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