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DNA metabarcoding reveals multiple co-occurring species in Stephanodiscus spring diatom blooms in a temperate freshwater river

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Vertical Structure of the Open Ocean: Biology of the Mixed Layer
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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
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Harmful algal blooms and eutrophication: Nutrient sources, composition, and consequences
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A molecular survey of freshwater microeukaryotes in an Arctic reservoir (Svalbard, 79°N) in summer by using next-generation sequencing
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Molecular genetic divergence of the centric diatom Cyclotella and Discostella (Bacillariophyceae) revealed by nuclear ribosomal DNA comparisons
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Hypervariable regions (V1–V9) of the dinoflagellate 18S rRNA using a large dataset for marker considerations
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Biological control of Stephanodiscus hantzschii (Bacillariophyceae) blooms in a field mesocosm by the immobilized algicidal bacterium Pseudomonas fluorescens HYK0210-SK09
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Molecular diversity of phytoplankton in the East China Sea around Jeju Island (Korea), unraveled by pyrosequencing
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Non-monotonic Responses of Phytoplankton Biomass Accumulation to Hydrologic Variability: A Comparison of Two Coastal Plain North Carolina Estuaries
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Evaluation of nuclear ribosomal RNA and chloroplast gene markers for the DNA taxonomy of centric diatoms
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Molecular cloning reveals co-occurring species behind red tide blooms of the harmful dinoflagellate Cochlodinium polykrikoides
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The impact of changing climate on phenology, productivity, and benthic–pelagic coupling in Narragansett Bay
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Effects of climatic variability on phytoplankton community structure and bloom development in the eutrophic, microtidal, New River Estuary, North Carolina, USA
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Phylogenetic, chemical and morphological diversity of cyanobacteria from Portuguese temperate estuaries
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Phytoplankton spring bloom initiation: The impact of atmospheric forcing and light in the temperate North Atlantic Ocean
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Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization
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The Ecology of Phytoplankton
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USE OF PHYTOPLANKTON IN LARGE RIVER MANAGEMENT
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Unresolved diversity and monthly dynamics of eukaryotic phytoplankton in a temperate freshwater reservoir explored by pyrosequencing
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Insights into global diatom distribution and diversity in the world’s ocean
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CYCLOTELLA HAKANSSONIAEWENDKER AND ITS RELATIONSHIP TOC. CASPIAGRUNOW AND OTHER SIMILAR BRACKISH WATERCYCLOTELLASPECIES
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STANDARDIZING THE TAXONOMY OF SALINE LAKECYCLOTELLASPP.
inferredcites →https://doi.org/10.1093/bioinformatics/btl158openalex-snapshot
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
inferredcites →https://doi.org/10.1093/icesjms/fsv110openalex-snapshot
Revisiting Sverdrup's critical depth hypothesis
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1098/rstb.2010.0125openalex-snapshot
The annual cycles of phytoplankton biomass
inferredcites →https://doi.org/10.1099/ijs.0.000076openalex-snapshot
Comparison of potential diatom ‘barcode’ genes (the 18S rRNA gene and ITS, COI, rbcL) and their effectiveness in discriminating and determining species taxonomy in the Bacillariophyta
inferredcites →https://doi.org/10.1111/gcb.13642openalex-snapshot
The importance of benthic–pelagic coupling for marine ecosystem functioning in a changing world
inferredcites →https://doi.org/10.1111/j.1529-8817.2006.00161.xopenalex-snapshot
MOLECULAR PHYLOGENY OF SELECTED MEMBERS OF THE ORDER THALASSIOSIRALES (BACILLARIOPHYTA) AND EVOLUTION OF THE FULTOPORTULA1
inferredcites →https://doi.org/10.1126/science.aaf8536openalex-snapshot
Physiological and ecological drivers of early spring blooms of a coastal phytoplankter
inferredcites →https://doi.org/10.1127/0029-5035/2005/0080-0025openalex-snapshot
Phylogenetic relationships among Daldinia, Entonaema, and Hypoxylon as inferred from ITS nrDNA analyses of Xylariales
inferredcites →https://doi.org/10.1127/0029-5035/2007/0084-0135openalex-snapshot
The occurrence and ecology of the centric diatom Cyclotella choctawhatcheeana Prasad in a Croatian estuary
inferredcites →https://doi.org/10.1127/fal/2016/0941openalex-snapshot
Temperature and growth strategies as the essential factors influencing the occurrence of Stephanodiscus minutulus (Kützing) Cleve & Möller and Palatinus apiculatus (Ehrenberg) Craveiro, Calado, Daugbjerg & Moestrup
inferredcites →https://doi.org/10.1146/annurev-marine-052913-021325openalex-snapshot
Resurrecting the Ecological Underpinnings of Ocean Plankton Blooms
inferredcites →https://doi.org/10.11614/ksl.2014.47.4.273openalex-snapshot
Temporal Variation and Identification of a Centric Diatom, Stephanodiscus spp. during Winter-spring Blooms in the Yeongsan River.
inferredcites →https://doi.org/10.11614/ksl.2016.49.4.320openalex-snapshot
Limnological Study on Spring-Bloom of a Green Algae, Eudorina elegans and Weirwater Pulsed-Flows in the Midstream (Seungchon Weir Pool) of the Yeongsan River, Korea
inferredcites →https://doi.org/10.11626/kjeb.2018.36.4.591openalex-snapshot
The Change of Phytoplankton Community Structure and Water Quality in the Juksan Weir of the Yeongsan River Watershed
inferredcites →https://doi.org/10.1186/s12302-020-00321-wopenalex-snapshot
Combining morphological and metabarcoding approaches reveals the freshwater eukaryotic phytoplankton community
inferredcites →https://doi.org/10.1371/journal.pone.0023321openalex-snapshot
Comparative Analysis of Bacterial Communities in a Potato Field as Determined by Pyrosequencing
inferredcites →https://doi.org/10.1371/journal.pone.0053516openalex-snapshot
Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach
inferredcites →https://doi.org/10.1371/journal.pone.0106510openalex-snapshot
Use of High Throughput Sequencing and Light Microscopy Show Contrasting Results in a Study of Phytoplankton Occurrence in a Freshwater Environment
inferredcites →https://doi.org/10.2216/i0031-8884-29-4-418.1openalex-snapshot
The genus Cyelotella (Bacillariophyta) in Choctawhatchee Bay, Florida, with special reference to C. striata and C. choctawhatcheeana sp. nov.
inferredcites →https://doi.org/10.2216/i0031-8884-35-1-64.1openalex-snapshot
Morphological variation of Cyclotella polymorpha sp. nov. (Bacillariophyceae)
inferredcites →https://doi.org/10.2478/v10184-011-0067-0openalex-snapshot
Centric diatoms of large rivers and tributaries in Hungary: morphology and biogeographic distribution
inferredcites →https://doi.org/10.3389/fevo.2019.00409openalex-snapshot
Diatom DNA Metabarcoding for Biomonitoring: Strategies to Avoid Major Taxonomical and Bioinformatical Biases Limiting Molecular Indices Capacities
inferredcites →https://doi.org/10.3389/fmars.2019.00482openalex-snapshot
Climate Driven Changes in Timing, Composition and Magnitude of the Baltic Sea Phytoplankton Spring Bloom
inferredcites →https://doi.org/10.3390/microorganisms4020019openalex-snapshot
New Dimensions in Microbial Ecology—Functional Genes in Studies to Unravel the Biodiversity and Role of Functional Microbial Groups in the Environment
inferredcites →https://doi.org/10.4319/lo.1997.42.5_part_2.1132openalex-snapshot
What is a bloom? A commentary
inferredcites →https://doi.org/10.4490/algae.2009.24.3.129openalex-snapshot
Comparative Molecular Analysis of Freshwater Centric Diatoms with Particular Emphasis on the Nuclear Ribosomal DNA of Stephanodiscus (Bacillariophyceae)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/mbmg.10.168096zenodo-depositor-declared
DNA metabarcoding of diatoms: A next-generation tool for aquatic biodiversity and bioassessment
inferred← citeshttps://doi.org/10.1007/s12275-023-00055-3openalex-snapshot
Ship Hull-Fouling Diatoms on Korean Research Vessels Revealed by Morphological and Molecular Methods, and Their Environmental Implications
inferred← citeshttps://doi.org/10.1007/s12601-024-00143-4openalex-snapshot
Significant Reduction of Photosynthesis in the Harmful Dinoflagellate Margalefidinium polykrikoides by Co-culturing with the Marine Green Alga Tetraselmis suecica
inferred← citeshttps://doi.org/10.1016/j.envres.2022.113568openalex-snapshot
Dam-induced flow velocity decrease leads to the transition from heterotrophic to autotrophic system through modifying microbial food web dynamics
inferred← citeshttps://doi.org/10.1016/j.watres.2025.123409openalex-snapshot
Diatomaceous organic matter is overlooked but forms disinfection byproducts of high cytotoxicity during chlorination
inferred← citeshttps://doi.org/10.1080/02705060.2023.2205874openalex-snapshot
Comparison of the phytoplankton community compositions between the temperate reservoir and the downstream river areas of the Han River, Korea
inferred← citeshttps://doi.org/10.2139/ssrn.5554486openalex-snapshot
A four-year DNA metabarcoding revealed the ecological importance of phototrophic nanoflagellates in highly eutrophic Tokyo Bay, Japan
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