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Ciona intestinalis Hox gene cluster: Its dispersed structure and residual colinear expression in development

https://doi.org/10.1073/pnas.0401389101
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1097-0177(199809)213:1<82::aid-aja8>3.0.co;2-uopenalex-snapshot
Analysis of Hox gene expression during early avian heart development
inferredcites →https://doi.org/10.1002/j.1460-2075.1990.tb08309.xopenalex-snapshot
A murine even‐skipped homologue, Evx 1, is expressed during early embryogenesis and neurogenesis in a biphasic manner.
inferredcites →https://doi.org/10.1006/dbio.1995.1128openalex-snapshot
Coordinated Expression of Abd-B Subfamily Genes of the HoxA Cluster in the Developing Digestive Tract of Chick Embryo
inferredcites →https://doi.org/10.1006/dbio.2001.0375openalex-snapshot
Amphioxus Evx Genes: Implications for the Evolution of the Midbrain–Hindbrain Boundary and the Chordate Tailbud
inferredcites →https://doi.org/10.1006/dbio.2002.0660openalex-snapshot
The Single Amphioxus Mox Gene: Insights into the Functional Evolution of Mox Genes, Somites, and the Asymmetry of Amphioxus Somitogenesis
inferredcites →https://doi.org/10.1006/dbio.2002.0861openalex-snapshot
Early Steps in the Formation of Neural Tissue in Ascidian Embryos
inferredcites →https://doi.org/10.1007/s00427-002-0230-7openalex-snapshot
Gene expression profiles in young adult Ciona intestinalis
inferredcites →https://doi.org/10.1007/s00427-003-0321-0openalex-snapshot
A genomewide survey of developmentally relevant genes in Ciona intestinalis
inferredcites →https://doi.org/10.1007/s004270050011openalex-snapshot
Developmental fates of larval tissues after metamorphosis in the ascidian, Halocynthia roretzi
inferredcites →https://doi.org/10.1007/s004270050142openalex-snapshot
Cihox5, a new Ciona intestinalis Hox-related gene, is involved in regionalization of the spinal cord
inferredcites →https://doi.org/10.1007/s004270050147openalex-snapshot
Nervous network in larvae of the ascidian Ciona intestinalis
inferredcites →https://doi.org/10.1016/0092-8674(92)90471-nopenalex-snapshot
Homeobox genes and axial patterning
inferredcites →https://doi.org/10.1016/0925-4773(95)00359-9openalex-snapshot
Spatially and temporally regulated expression of the LIM class homeobox gene Hrlim suggests multiple distinct functions in development of the ascidian, Halocynthia roretzi
inferredcites →https://doi.org/10.1016/s0378-1119(03)00488-8openalex-snapshot
Unusual number and genomic organization of Hox genes in the tunicate Ciona intestinalis
inferredcites →https://doi.org/10.1016/s0960-9822(00)00676-xopenalex-snapshot
Evidence for 14 homeobox gene clusters in human genome ancestry
inferredcites →https://doi.org/10.1016/s1055-7903(02)00204-xopenalex-snapshot
Ciona intestinalis ParaHox genes: evolution of Hox/ParaHox cluster integrity, developmental mode, and temporal colinearity
inferredcites →https://doi.org/10.1016/s1055-7903(02)00237-3openalex-snapshot
Hox clusters and bilaterian phylogeny
inferredcites →https://doi.org/10.1016/s1567-133x(03)00051-6openalex-snapshot
Expression of Raldh2, Cyp26 and Hox-1 in normal and retinoic acid-treated Ciona intestinalis embryos
inferredcites →https://doi.org/10.1038/21631openalex-snapshot
Hox genes in brachiopods and priapulids and protostome evolution
inferredcites →https://doi.org/10.1038/376479a0openalex-snapshot
Homeotic genes and the evolution of arthropods and chordates
inferredcites →https://doi.org/10.1038/nature02709openalex-snapshot
Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica
inferredcites →https://doi.org/10.1073/pnas.93.23.13024openalex-snapshot
Organization of the Hox gene cluster in the grasshopper, Schistocerca gregaria
inferredcites →https://doi.org/10.1073/pnas.97.9.4499openalex-snapshot
Caenorhabditis elegans embryonic axial patterning requires two recently discovered posterior-group Hox genes
inferredcites →https://doi.org/10.1126/science.1080049openalex-snapshot
The Draft Genome of Ciona intestinalis : Insights into Chordate and Vertebrate Origins
inferredcites →https://doi.org/10.1186/gb-2003-4-2-r12openalex-snapshot
Genesis and evolution of the Evx and Moxgenes and the extended Hox and ParaHox gene clusters
inferredcites →https://doi.org/10.1242/dev.116.4.1123openalex-snapshot
Mox-1 and Mox-2 define a novel homeobox gene subfamily and are differentially expressed during early mesodermal patterning in mouse embryos
inferredcites →https://doi.org/10.1242/dev.121.10.3197openalex-snapshot
Expression of the labial group Hox gene HrHox-1 and its alteration induced by retinoic acid in development of the ascidian Halocynthia roretzi
inferredcites →https://doi.org/10.1242/dev.126.21.4737openalex-snapshot
Patterning the ascidian nervous system: structure, expression and transgenic analysis of theCiHox3gene
inferredcites →https://doi.org/10.1242/dev.128.15.2893openalex-snapshot
Gene expression profiles inCiona intestinalistailbud embryos
inferredcites →https://doi.org/10.1266/ggs.77.283openalex-snapshot
Construction of BAC libraries derived from the ascidian Ciona intestinalis.
inferredcites →https://doi.org/10.2108/zsj.21.153openalex-snapshot
Fluorescentin situHybridization to Ascidian Chromosomes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s13127-022-00569-5zenodo-depositor-declared
A mosaic of conserved and novel modes of gene expression and morphogenesis in mesoderm and muscle formation of a larval bivalve
inferred← citeshttps://doi.org/10.1002/9780470015902.a0001063.pub3openalex-snapshot
Evolutionary Developmental Biology:HoxGene Evolution
inferred← citeshttps://doi.org/10.1002/9780470015902.a0021411openalex-snapshot
Ciona : A Model for Developmental Genomics
inferred← citeshttps://doi.org/10.1002/9780470015902.a0021774openalex-snapshot
Regulatory Genes in Ancestral Chordates
inferred← citeshttps://doi.org/10.1002/9780470015902.a0022852openalex-snapshot
Origin of Bilaterian Hox Patterning System
inferred← citeshttps://doi.org/10.1002/9780470015902.a0023989openalex-snapshot
Evolution of the Hox Gene Cluster
inferred← citeshttps://doi.org/10.1002/9781118316757.ch6openalex-snapshot
The First Nervous System
inferred← citeshttps://doi.org/10.1002/9781118656129.ch12openalex-snapshot
Making Blueprint of Chordate Body: Dynamic Activities of Regulatory Genes
inferred← citeshttps://doi.org/10.1002/bies.200800110openalex-snapshot
It's a long way from amphioxus: descendants of the earliest chordate
inferred← citeshttps://doi.org/10.1002/dvdy.20300openalex-snapshot
Ciona intestinalis: Chordate development made simple
inferred← citeshttps://doi.org/10.1002/dvdy.20374openalex-snapshot
Organization of Hox genes in ascidians: Present, past, and future
inferred← citeshttps://doi.org/10.1002/dvdy.20730openalex-snapshot
Conserved RARE localization in amphioxus Hox clusters and implications for Hox code evolution in the vertebrate neural crest
inferred← citeshttps://doi.org/10.1002/dvdy.21184openalex-snapshot
Ascidian notochord morphogenesis
inferred← citeshttps://doi.org/10.1002/dvdy.21213openalex-snapshot
Lineage‐independent mosaic expression and regulation of the Ciona multidom gene in the ancestral notochord
inferred← citeshttps://doi.org/10.1002/dvdy.21525openalex-snapshot
Evolution of the thyroid: Anterior–posterior regionalization of the Oikopleura endostyle revealed by Otx, Pax2/5/8, and Hox1 expression
inferred← citeshttps://doi.org/10.1002/dvdy.24009openalex-snapshot
Formation of the digestive tract in Ciona intestinalis includes two distinct morphogenic processes between its anterior and posterior parts
inferred← citeshttps://doi.org/10.1002/dvdy.77openalex-snapshot
Evolution of vertebrate spinal cord patterning
inferred← citeshttps://doi.org/10.1002/dvg.20403openalex-snapshot
Evolutionary conservation of vertebrate notochord genes in the ascidian Ciona intestinalis
inferred← citeshttps://doi.org/10.1002/dvg.20444openalex-snapshot
Retinoic acid signaling in development: Tissue‐specific functions and evolutionary origins
inferred← citeshttps://doi.org/10.1002/dvg.20450openalex-snapshot
Additional molecular support for the new chordate phylogeny
inferred← citeshttps://doi.org/10.1002/dvg.22380openalex-snapshot
Encoding anatomy: Developmental gene regulatory networks and morphogenesis
inferred← citeshttps://doi.org/10.1002/dvg.22838openalex-snapshot
Regulatory elements retained during chordate evolution: Coming across tunicates
inferred← citeshttps://doi.org/10.1002/dvg.22839openalex-snapshot
Hox and ParaHox genes: A review on molluscs
inferred← citeshttps://doi.org/10.1002/dvg.22840openalex-snapshot
Genomic organization of H ox and P ara H ox clusters in the echinoderm, A canthaster planci
inferred← citeshttps://doi.org/10.1002/jez.b.21038openalex-snapshot
Non-neural ectoderm is really neural: evolution of developmental patterning mechanisms in the non-neural ectoderm of chordates and the problem of sensory cell homologies
inferred← citeshttps://doi.org/10.1002/jez.b.21070openalex-snapshot
Unusual gene order and organization of the sea urchin hox cluster
inferred← citeshttps://doi.org/10.1002/jez.b.21157openalex-snapshot
Development and evolution of chordate cartilage
inferred← citeshttps://doi.org/10.1002/jez.b.21208openalex-snapshot
PCR survey of Xenoturbella bocki Hox genes
inferred← citeshttps://doi.org/10.1002/neu.20240openalex-snapshot
Retinoids and nonvertebrate chordate development
inferred← citeshttps://doi.org/10.1002/wdev.286openalex-snapshot
Segmental arithmetic: summing up the Hox gene regulatory network for hindbrain development in chordates
inferred← citeshttps://doi.org/10.1002/wdev.304openalex-snapshot
Formation of adult organs through metamorphosis in ascidians
inferred← citeshttps://doi.org/10.1007/978-0-387-46954-6_15openalex-snapshot
Evolution of the Neural Crest
inferred← citeshttps://doi.org/10.1007/978-0-387-68990-6_5openalex-snapshot
Evolutionary Genomics of Hox Gene Clusters
inferred← citeshttps://doi.org/10.1007/978-1-4419-6673-5openalex-snapshot
Hox genes : studies from the 20th to the 21st century
inferred← citeshttps://doi.org/10.1007/978-1-4419-6673-5_4openalex-snapshot
Control of Vertebrate Hox Clusters by Remote and Global Cis-Acting Regulatory Sequences
inferred← citeshttps://doi.org/10.1007/978-1-4419-6673-5_6openalex-snapshot
Evolution of Hox Complexes
inferred← citeshttps://doi.org/10.1007/978-1-4419-6673-5_7openalex-snapshot
The Nematode Story: Hox Gene Loss and Rapid Evolution
inferred← citeshttps://doi.org/10.1007/978-3-642-31316-5_4openalex-snapshot
Genome Structure, Functional Genomics, and Proteomics in Ascidians
inferred← citeshttps://doi.org/10.1007/978-3-7091-1856-6_4openalex-snapshot
Tunicata
inferred← citeshttps://doi.org/10.1007/978-4-431-92691-7_20openalex-snapshot
Reconstruction of the Vertebrate Ancestral Genome Reveals Dynamic Genome Reorganization in Early Vertebrates
inferred← citeshttps://doi.org/10.1007/978-981-10-7545-2_11openalex-snapshot
The Enhancer Trap in Ciona
inferred← citeshttps://doi.org/10.1007/s00239-010-9372-9openalex-snapshot
Accelerated Evolutionary Rate of Housekeeping Genes in Tunicates
inferred← citeshttps://doi.org/10.1007/s00427-005-0483-zopenalex-snapshot
Restricted expression of a median Hox gene in the central nervous system of chaetognaths
inferred← citeshttps://doi.org/10.1007/s00427-008-0230-3openalex-snapshot
Left–right asymmetric expression of Pitx is regulated by the asymmetric Nodal signaling through an intronic enhancer in Ciona intestinalis
inferred← citeshttps://doi.org/10.1007/s00441-016-2360-7openalex-snapshot
Ordered expression pattern of Hox and ParaHox genes along the alimentary canal in the ascidian juvenile
inferred← citeshttps://doi.org/10.1007/s00441-017-2627-7openalex-snapshot
Compartmentalized expression patterns of pancreatic- and gastric-related genes in the alimentary canal of the ascidian Ciona intestinalis: evolutionary insights into the functional regionality of the gastrointestinal tract in Olfactores
inferred← citeshttps://doi.org/10.1007/s00441-019-03035-5openalex-snapshot
Molecular and evolutionary aspects of the protochordate digestive system
inferred← citeshttps://doi.org/10.1007/s00441-023-03828-9openalex-snapshot
Repetitive and zonal expression profiles of absorption-related genes in the gastrointestinal tract of ascidian Ciona intestinalis type A
inferred← citeshttps://doi.org/10.1016/b0-12-370878-8/00107-5openalex-snapshot
Basic Nervous System Types: One or Many?
inferred← citeshttps://doi.org/10.1016/b978-0-12-381332-9.00006-2openalex-snapshot
The Specification of Myocardial Progenitor Cells in the Ciona Tadpole
inferred← citeshttps://doi.org/10.1016/b978-0-12-387038-4.00002-1openalex-snapshot
Evolution, Expression, and Developmental Function of Hox-Embedded miRNAs
inferred← citeshttps://doi.org/10.1016/b978-0-12-802996-1.16001-8openalex-snapshot
References
inferred← citeshttps://doi.org/10.1016/b978-0-12-822563-9.00196-7openalex-snapshot
Hox Genes
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2014.11.008openalex-snapshot
Vertebrate Cranial Placodes as Evolutionary Innovations—The Ancestor's Tale
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2015.11.022openalex-snapshot
Topological Domains, Metagenes, and the Emergence of Pleiotropic Regulations at Hox Loci
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2016.08.007openalex-snapshot
T-Box Genes and Developmental Gene Regulatory Networks in Ascidians
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2020.01.002openalex-snapshot
The notochord gene regulatory network in chordate evolution: Conservation and divergence from Ciona to vertebrates
inferred← citeshttps://doi.org/10.1016/j.autneu.2010.05.007openalex-snapshot
Evolution of neuronal signalling: Transmitters and receptors
inferred← citeshttps://doi.org/10.1016/j.bbagrm.2014.05.010openalex-snapshot
Repressive histone methylation: A case study in deterministic versus stochastic gene regulation
inferred← citeshttps://doi.org/10.1016/j.cub.2006.06.051openalex-snapshot
Animal Evolution: When Did the ‘Hox System’ Arise?
inferred← citeshttps://doi.org/10.1016/j.cub.2008.05.039openalex-snapshot
Ascidians and the Plasticity of the Chordate Developmental Program
inferred← citeshttps://doi.org/10.1016/j.gde.2007.07.008openalex-snapshot
Ancestral and recently recruited global control of the Hox genes in development
inferred← citeshttps://doi.org/10.1016/j.gep.2010.01.004openalex-snapshot
Spatial and temporal expression of two transcriptional isoforms of Lhx3, a LIM class homeobox gene, during embryogenesis of two phylogenetically remote ascidians, Halocynthia roretzi and Ciona intestinalis
inferred← citeshttps://doi.org/10.1016/j.heliyon.2025.e42995openalex-snapshot
Developmental transitions involve common biological processes across living beings
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2017.03.165openalex-snapshot
How does chromatin package DNA within nucleus and regulate gene expression?
inferred← citeshttps://doi.org/10.1016/j.neuron.2015.09.009openalex-snapshot
Even-Skipped+ Interneurons Are Core Components of a Sensorimotor Circuit that Maintains Left-Right Symmetric Muscle Contraction Amplitude
inferred← citeshttps://doi.org/10.1016/j.tig.2005.08.004openalex-snapshot
Timing and mechanism of ancient vertebrate genome duplications – the adventure of a hypothesis
inferred← citeshttps://doi.org/10.1016/j.ydbio.2005.06.018openalex-snapshot
Ets identified as a trans-regulatory factor of amphioxus Hox2 by transgenic analysis using ascidian embryos
inferred← citeshttps://doi.org/10.1016/j.ydbio.2005.06.039openalex-snapshot
Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain
inferred← citeshttps://doi.org/10.1016/j.ydbio.2006.04.457openalex-snapshot
A retinoic acid-Hox hierarchy controls both anterior/posterior patterning and neuronal specification in the developing central nervous system of the cephalochordate amphioxus
inferred← citeshttps://doi.org/10.1016/j.ydbio.2007.02.032openalex-snapshot
Development of a chordate anterior–posterior axis without classical retinoic acid signaling
inferred← citeshttps://doi.org/10.1016/j.ydbio.2007.05.009openalex-snapshot
Hox gene expression patterns in Lethenteron japonicum embryos—Insights into the evolution of the vertebrate Hox code
inferred← citeshttps://doi.org/10.1016/j.ydbio.2007.10.005openalex-snapshot
Dynamic change in the expression of developmental genes in the ascidian central nervous system: Revisit to the tripartite model and the origin of the midbrain–hindbrain boundary region
inferred← citeshttps://doi.org/10.1016/j.ydbio.2008.01.009openalex-snapshot
Genome-wide network of regulatory genes for construction of a chordate embryo
inferred← citeshttps://doi.org/10.1016/j.ydbio.2009.09.027openalex-snapshot
Epidermal expression of Hox1 is directly activated by retinoic acid in the Ciona intestinalis embryo
inferred← citeshttps://doi.org/10.1016/j.ydbio.2011.01.006openalex-snapshot
Expression of neuropeptide- and hormone-encoding genes in the Ciona intestinalis larval brain
inferred← citeshttps://doi.org/10.1016/j.ydbio.2011.03.006openalex-snapshot
Repression of Rx gene on the left side of the sensory vesicle by Nodal signaling is crucial for right-sided formation of the ocellus photoreceptor in the development of Ciona intestinalis
inferred← citeshttps://doi.org/10.1016/j.ydbio.2013.03.004openalex-snapshot
Duplications of hox gene clusters and the emergence of vertebrates
inferred← citeshttps://doi.org/10.1016/j.ydbio.2014.01.019openalex-snapshot
The evolutionary history of vertebrate cranial placodes II. Evolution of ectodermal patterning
inferred← citeshttps://doi.org/10.1016/j.ydbio.2015.03.018openalex-snapshot
Hox10-regulated endodermal cell migration is essential for development of the ascidian intestine
inferred← citeshttps://doi.org/10.1016/j.ydbio.2017.01.022openalex-snapshot
Germ cell regeneration-mediated, enhanced mutagenesis in the ascidian Ciona intestinalis reveals flexible germ cell formation from different somatic cells
inferred← citeshttps://doi.org/10.1016/j.ydbio.2018.10.009openalex-snapshot
De novo neurogenesis in a budding chordate: Co-option of larval anteroposterior patterning genes in a transitory neurogenic organ
inferred← citeshttps://doi.org/10.1016/j.ydbio.2018.11.011openalex-snapshot
Spatio-temporal regulation of Rx and mitotic patterns shape the eye-cup of the photoreceptor cells in Ciona
inferred← citeshttps://doi.org/10.1016/j.ydbio.2018.12.010openalex-snapshot
Ci-hox12 tail gradient precedes and participates in the control of the apoptotic-dependent tail regression during Ciona larva metamorphosis
inferred← citeshttps://doi.org/10.1016/j.ydbio.2019.10.028openalex-snapshot
Hox13 is essential for formation of a sensory organ at the terminal end of the sperm duct in Ciona
inferred← citeshttps://doi.org/10.1016/j.ydbio.2025.08.013openalex-snapshot
Germ cell formation and reproduction in tunicates
inferred← citeshttps://doi.org/10.1016/s1672-0229(11)60010-7openalex-snapshot
The Origin of Patterning Systems in Bilateria—Insights from the Hox and ParaHox Genes in Acoelomorpha
inferred← citeshttps://doi.org/10.1016/s1672-0229(11)60011-9openalex-snapshot
Evolution of Invertebrate Deuterostomes and Hox/ParaHox Genes
inferred← citeshttps://doi.org/10.1016/s1937-6448(09)78003-7openalex-snapshot
Chapter 3 Genotype–Phenotype Mapping
inferred← citeshttps://doi.org/10.1038/nature13723openalex-snapshot
A Hox regulatory network of hindbrain segmentation is conserved to the base of vertebrates
inferred← citeshttps://doi.org/10.1038/nrg1688openalex-snapshot
The role of chromatin structure in regulating the expression of clustered genes
inferred← citeshttps://doi.org/10.1038/nrg1723openalex-snapshot
The genesis and evolution of homeobox gene clusters
inferred← citeshttps://doi.org/10.1038/nrg2226openalex-snapshot
Evolutionary developmental biology and genomics
inferred← citeshttps://doi.org/10.1038/s41467-019-09197-8openalex-snapshot
A Hox-TALE regulatory circuit for neural crest patterning is conserved across vertebrates
inferred← citeshttps://doi.org/10.1038/s41467-020-16801-9openalex-snapshot
Jellyfish genomes reveal distinct homeobox gene clusters and conservation of small RNA processing
inferred← citeshttps://doi.org/10.1038/s41467-023-41184-yopenalex-snapshot
Sinus venosus adaptation models prolonged cardiovascular disease and reveals insights into evolutionary transitions of the vertebrate heart
inferred← citeshttps://doi.org/10.1038/s41559-017-0120openalex-snapshot
Scallop genome provides insights into evolution of bilaterian karyotype and development
inferred← citeshttps://doi.org/10.1038/s41559-018-0526-2openalex-snapshot
Hagfish and lamprey Hox genes reveal conservation of temporal colinearity in vertebrates
inferred← citeshttps://doi.org/10.1038/s41559-018-0641-0openalex-snapshot
Evolution of the bilaterian mouth and anus
inferred← citeshttps://doi.org/10.1038/s41598-024-79962-3openalex-snapshot
Evolutionary plasticity in nematode Hox gene complements and genomic loci arrangement
inferred← citeshttps://doi.org/10.1038/s42003-025-09398-6openalex-snapshot
Anterior-posterior patterning in the chaetognath Spadella cephaloptera informs bilaterian nervous system and tail evolution
inferred← citeshttps://doi.org/10.1038/sj.hdy.6800834openalex-snapshot
Molecular phylogeny: My sister is a sea squirt?
inferred← citeshttps://doi.org/10.1073/pnas.0600805103openalex-snapshot
Precraniate origin of cranial motoneurons
inferred← citeshttps://doi.org/10.1073/pnas.0607543103openalex-snapshot
Vitamin K-dependent proteins in Ciona intestinalis , a basal chordate lacking a blood coagulation cascade
inferred← citeshttps://doi.org/10.1073/pnas.0710947105openalex-snapshot
Noncanonical role of Hox14 revealed by its expression patterns in lamprey and shark
inferred← citeshttps://doi.org/10.1073/pnas.0907914106openalex-snapshot
Elephant shark ( Callorhinchus milii ) provides insights into the evolution of Hox gene clusters in gnathostomes
inferred← citeshttps://doi.org/10.1073/pnas.1111941109openalex-snapshot
The chromatin insulator CTCF and the emergence of metazoan diversity
inferred← citeshttps://doi.org/10.1073/pnas.1904602116openalex-snapshot
The constrained architecture of mammalian Hox gene clusters
inferred← citeshttps://doi.org/10.1093/bfgp/els004openalex-snapshot
Focus on miRNAs evolution: a perspective from amphioxus
inferred← citeshttps://doi.org/10.1093/gbe/evaa060openalex-snapshot
Inferring Tunicate Relationships and the Evolution of the Tunicate Hox Cluster with the Genome of Corella inflata
inferred← citeshttps://doi.org/10.1093/icb/icab022openalex-snapshot
The Degenerate Tale of Ascidian Tails
inferred← citeshttps://doi.org/10.1093/icb/icae084openalex-snapshot
Single-cell Transcriptomic Studies Unveil Potential Nodes of the Notochord Gene Regulatory Network
inferred← citeshttps://doi.org/10.1093/icb/icl045openalex-snapshot
Hox gene expression in the hemichordate Saccoglossus kowalevskii and the evolution of deuterostome nervous systems
inferred← citeshttps://doi.org/10.1093/molbev/msi239openalex-snapshot
Evidence for a Dispersed Hox Gene Cluster in the Platyhelminth Parasite Schistosoma mansoni
inferred← citeshttps://doi.org/10.1093/nar/gkt030openalex-snapshot
Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development
inferred← citeshttps://doi.org/10.1098/rspb.2022.0705openalex-snapshot
Echiuran Hox genes provide new insights into the correspondence between Hox subcluster organization and collinearity pattern
inferred← citeshttps://doi.org/10.1098/rstb.2006.1846openalex-snapshot
Darwin's dilemma: the realities of the Cambrian ‘explosion’
inferred← citeshttps://doi.org/10.1101/2023.10.16.562615openalex-snapshot
Revisiting Hox gene evolution and Hox cluster linkage across Nematoda
inferred← citeshttps://doi.org/10.1101/2024.06.24.600346openalex-snapshot
High-resolution chromosome-level genome provides molecular insights into adaptive evolution in crabs
inferred← citeshttps://doi.org/10.1101/2024.08.26.609757openalex-snapshot
Early Hox Gene Expression in Echinoderms
inferred← citeshttps://doi.org/10.1101/2025.01.31.635887openalex-snapshot
Chaetognaths exhibit the most extensive repertoire of Hox genes among protostomes
inferred← citeshttps://doi.org/10.1101/572875openalex-snapshot
Constrained Transcriptional Polarity in the Organization of Mammalian Hox Gene Clusters
inferred← citeshttps://doi.org/10.1101/gr.080119.108openalex-snapshot
Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement
inferred← citeshttps://doi.org/10.1101/gr.184978.114openalex-snapshot
Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells
inferred← citeshttps://doi.org/10.1101/gr.3468605openalex-snapshot
Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex
inferred← citeshttps://doi.org/10.1101/gr.3768905openalex-snapshot
Unraveling genomic regulatory networks in the simple chordate, Ciona intestinalis
inferred← citeshttps://doi.org/10.1111/dgd.12033openalex-snapshot
Identification of a retinoic acid‐responsive neural enhancer in the Ciona intestinalis Hox1 gene
inferred← citeshttps://doi.org/10.1111/dgd.12149openalex-snapshot
CRISPR / C as9‐mediated gene knockout in the ascidian C iona intestinalis
inferred← citeshttps://doi.org/10.1111/dgd.12684openalex-snapshot
Enhancer evolution in chordates: Lessons from functional analyses of cephalochordate cis‐regulatory modules
inferred← citeshttps://doi.org/10.1111/dgd.70028openalex-snapshot
Hox3 Is Required for Post‐Metamorphic Heart Development in Adult Ciona
inferred← citeshttps://doi.org/10.1111/j.1095-8312.2006.00574.xopenalex-snapshot
Are protochordates chordates?
inferred← citeshttps://doi.org/10.1111/j.1440-169x.2007.00928.xopenalex-snapshot
Hoxgenes in time and space during vertebrate body formation
inferred← citeshttps://doi.org/10.1111/j.1440-169x.2008.01035.xopenalex-snapshot
Development of the appendicularianOikopleura dioica: Culture, genome, and cell lineages
inferred← citeshttps://doi.org/10.1111/j.1440-169x.2012.01343.xopenalex-snapshot
Ascidians as excellent chordate models for studying the development of the nervous system during embryogenesis and metamorphosis
inferred← citeshttps://doi.org/10.1111/j.1502-3931.2008.00123.xopenalex-snapshot
The origins of graptolites and other pterobranchs: a journey from ‘Polyzoa’
inferred← citeshttps://doi.org/10.1111/j.1525-142x.2009.00363.xopenalex-snapshot
Tracking the origins of the bilaterian Hox patterning system: insights from the acoel flatworm Symsagittifera roscoffensis
inferred← citeshttps://doi.org/10.1111/j.1525-142x.2010.00460.xopenalex-snapshot
Deuterostome neuroanatomy and the body plan paradox
inferred← citeshttps://doi.org/10.1126/science.1132040openalex-snapshot
Genomic Evolution of Hox Gene Clusters
inferred← citeshttps://doi.org/10.1134/s0031030121070042openalex-snapshot
Evolutionary Transformations of the Metazoan Body Plan: Genomic-Morphogenetic Correlations
inferred← citeshttps://doi.org/10.1134/s0031030122080020openalex-snapshot
Origin of Echinodermata
inferred← citeshttps://doi.org/10.1134/s1062360410050048openalex-snapshot
The diversity of ontogeny in animals with asexual reproduction and plasticity of early development
inferred← citeshttps://doi.org/10.1134/s106236041005005xopenalex-snapshot
Hox-cluster and evolution of morphogeneses
inferred← citeshttps://doi.org/10.1139/cjz-2022-0213openalex-snapshot
Neuroendocrinology of the vase tunicate, Ciona intestinalis: consideration of the practical applications for the control of this invasive species
inferred← citeshttps://doi.org/10.1144/sp286.26openalex-snapshot
Seeing ghosts: Neoproterozoic bilaterian body plans
inferred← citeshttps://doi.org/10.1186/1471-213x-13-26openalex-snapshot
Evolution of Hoxgene clusters in deuterostomes
inferred← citeshttps://doi.org/10.1186/1471-2148-11-21openalex-snapshot
Evolutionary changes in the notochord genetic toolkit: a comparative analysis of notochord genes in the ascidian Ciona and the larvacean Oikopleura
inferred← citeshttps://doi.org/10.1186/1471-2148-11-330openalex-snapshot
Evolution of anterior Hox regulatory elements among chordates
inferred← citeshttps://doi.org/10.1186/1471-2148-7-143openalex-snapshot
Ancient intron insertion sites and palindromic genomic duplication evolutionally shapes an elementally functioning membrane protein family
inferred← citeshttps://doi.org/10.1186/1471-2164-8-317openalex-snapshot
Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni
inferred← citeshttps://doi.org/10.1186/1471-2164-9-39openalex-snapshot
SNPs and Hox gene mapping in Ciona intestinalis
inferred← citeshttps://doi.org/10.1186/1471-2202-11-6openalex-snapshot
A glycine receptor is involved in the organization of swimming movements in an invertebrate chordate
inferred← citeshttps://doi.org/10.1186/1741-7007-6-15openalex-snapshot
Characterization of the proneural gene regulatory network during mouse telencephalon development
inferred← citeshttps://doi.org/10.1186/1741-7007-7-43openalex-snapshot
Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes
inferred← citeshttps://doi.org/10.1186/1741-7007-7-65openalex-snapshot
Coordinated spatial and temporal expression of Hox genes during embryogenesis in the acoel Convolutriloba longifissura
inferred← citeshttps://doi.org/10.1186/2041-9139-3-28openalex-snapshot
Broken colinearity of the amphioxus Hox cluster
inferred← citeshttps://doi.org/10.1186/2041-9139-4-13openalex-snapshot
Hox gene expression during postlarval development of the polychaete Alitta virens
inferred← citeshttps://doi.org/10.1186/2041-9139-4-27openalex-snapshot
Evolution of bilaterian central nervous systems: a single origin?
inferred← citeshttps://doi.org/10.1186/2041-9139-5-22openalex-snapshot
How Hox genes can shed light on the place of echinoderms among the deuterostomes
inferred← citeshttps://doi.org/10.1186/s12915-018-0497-4openalex-snapshot
An adaptable chromosome preparation methodology for use in invertebrate research organisms
inferred← citeshttps://doi.org/10.1186/s12915-024-02054-1openalex-snapshot
High-resolution chromosome-level genome of Scylla paramamosain provides molecular insights into adaptive evolution in crabs
inferred← citeshttps://doi.org/10.1186/s13227-018-0114-1openalex-snapshot
Hox gene expression in postmetamorphic juveniles of the brachiopod Terebratalia transversa
inferred← citeshttps://doi.org/10.1186/s13227-020-0148-zopenalex-snapshot
Hox gene expression during development of the phoronid Phoronopsis harmeri
inferred← citeshttps://doi.org/10.1186/s13227-025-00242-wopenalex-snapshot
The application of irreversible genomic states to define and trace ancient cell type homologies
inferred← citeshttps://doi.org/10.1186/s40851-017-0078-3openalex-snapshot
Hox gene cluster of the ascidian, Halocynthia roretzi, reveals multiple ancient steps of cluster disintegration during ascidian evolution
inferred← citeshttps://doi.org/10.1186/s40851-018-0114-yopenalex-snapshot
The phylum Vertebrata: a case for zoological recognition
inferred← citeshttps://doi.org/10.1201/b15313-2openalex-snapshot
Retinoic Acid
inferred← citeshttps://doi.org/10.1242/bio.010835openalex-snapshot
Enhancer of zeste acts as a major developmental regulator ofCiona intestinalisembryogenesis
inferred← citeshttps://doi.org/10.1242/dev.001065openalex-snapshot
The rise and fall of Hox gene clusters
inferred← citeshttps://doi.org/10.1242/dev.046938openalex-snapshot
Limited functions of Hox genes in the larval development of the ascidian Ciona intestinalis
inferred← citeshttps://doi.org/10.1242/dev.048975openalex-snapshot
Evolutionary crossroads in developmental biology: the tunicates
inferred← citeshttps://doi.org/10.1242/dev.080234openalex-snapshot
Retinoic acid-driven Hox1 is required in the epidermis for forming the otic/atrial placodes during ascidian metamorphosis
inferred← citeshttps://doi.org/10.1242/dev.085464openalex-snapshot
Evolutionary crossroads in developmental biology
inferred← citeshttps://doi.org/10.1242/dev.144436openalex-snapshot
Hox-mediated endodermal identity patterns the pharyngeal muscle formation in the chordate pharynx
inferred← citeshttps://doi.org/10.1242/dev.202508openalex-snapshot
40 years of the homeobox: mechanisms of Hox spatial-temporal collinearity in vertebrates
inferred← citeshttps://doi.org/10.1371/journal.pgen.1005730openalex-snapshot
Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord
inferred← citeshttps://doi.org/10.1371/journal.pone.0000916openalex-snapshot
A Multicassette Gateway Vector Set for High Throughput and Comparative Analyses in Ciona and Vertebrate Embryos
inferred← citeshttps://doi.org/10.1371/journal.pone.0001396openalex-snapshot
MiR-10 Represses HoxB1a and HoxB3a in Zebrafish
inferred← citeshttps://doi.org/10.1371/journal.pone.0013689openalex-snapshot
Eph Regulates Dorsoventral Asymmetry of the Notochord Plate and Convergent Extension-Mediated Notochord Formation
inferred← citeshttps://doi.org/10.1371/journal.pone.0046193openalex-snapshot
Antagonizing Retinoic Acid and FGF/MAPK Pathways Control Posterior Body Patterning in the Invertebrate Chordate Ciona intestinalis
inferred← citeshttps://doi.org/10.1523/eneuro.0362-25.2026openalex-snapshot
Similarities between Ciona Dorsal Motor Ganglion and Vertebrate Cerebellum: Did a Chordate Ancestor Already Show D/V Subdivision within a Hindbrain Precursor?
inferred← citeshttps://doi.org/10.2108/zs140060openalex-snapshot
Analysis of the Transcription Regulatory Mechanism of Otx During the Development of the Sensory Vesicle in Ciona intestinalis
inferred← citeshttps://doi.org/10.2108/zsj.24.648openalex-snapshot
Effects of 5-aza-2′-deoxycytidine on the Gene Expression Profile During Embryogenesis of the Ascidian Ciona intestinalis: A Microarray Analysis
inferred← citeshttps://doi.org/10.2108/zsj.26.97openalex-snapshot
An Advanced Filter-Feeder Hypothesis for Urochordate Evolution
inferred← citeshttps://doi.org/10.2108/zsj.29.11openalex-snapshot
Establishment of Enhancer Detection Lines Expressing GFP in the Gut of the Ascidian Ciona intestinalis
inferred← citeshttps://doi.org/10.2174/138920212799860643openalex-snapshot
Current Status of Echinoderm Genome Analysis - What do we Know?
inferred← citeshttps://doi.org/10.2174/138920212800793348openalex-snapshot
Building a Robust A-P Axis
inferred← citeshttps://doi.org/10.2174/138920213804999192openalex-snapshot
Study of Cis-regulatory Elements in the Ascidian Ciona intestinalis
inferred← citeshttps://doi.org/10.3389/fcell.2021.718308openalex-snapshot
Homeotic Genes: Clustering, Modularity, and Diversity
inferred← citeshttps://doi.org/10.3390/biom14121545openalex-snapshot
Identification of Six Novel Proteins Containing a ZP Module from Nemertean Species
inferred← citeshttps://doi.org/10.3390/genes11111262openalex-snapshot
Transcription Factors of the bHLH Family Delineate Vertebrate Landmarks in the Nervous System of a Simple Chordate
inferred← citeshttps://doi.org/10.3390/ijms22094317openalex-snapshot
Genome-Wide Identification, Comparison, and Expression Analysis of Transcription Factors in Ascidian Styela clava
inferred← citeshttps://doi.org/10.3390/ijms24076270openalex-snapshot
Comparative Transcriptomic Analysis Reveals the Functionally Segmented Intestine in Tunicate Ascidian
inferred← citeshttps://doi.org/10.3390/jdb4010012openalex-snapshot
An Overview of Hox Genes in Lophotrochozoa: Evolution and Functionality
inferred← citeshttps://doi.org/10.3390/md13031451openalex-snapshot
Ciona intestinalis as a Marine Model System to Study Some Key Developmental Genes Targeted by the Diatom-Derived Aldehyde Decadienal
inferred← citeshttps://doi.org/10.3391/mbi.2013.4.3.03openalex-snapshot
Monitoring for propagules of Ciona intestinalis in marine water samples: the development of temporal gene expression markers for viability and life stage specific assays
inferred← citeshttps://doi.org/10.70675/02a6aa79z3c43z4f51z9498z306596326f97openalex-snapshot
De novo myogenesis and neurogenesis during budding of the colonial ascidian, Botryllus schlosseri
inferred← citeshttps://doi.org/10.70675/20d972d6z2b95z4a03z999fz98e4e50a28f6openalex-snapshot
Compréhension du rôle morphogénétique de l'apoptose et de son évolution : apports de l'étude de la métamorphose de Ciona intestinalis (Tunicata) et de Clytia hemisphaerica (Cnidaria)
inferred← citeshttps://doi.org/10.70675/233aae84z64bez4f99za41bzb93ee23c00e8openalex-snapshot
Identification à l'échelle génomique des éléments cis-régulateurs actifs au cours du développement des ascidies
inferred← citeshttps://doi.org/10.70675/2461f578z409bz48e2z991cz2c137f23308eopenalex-snapshot
Implications des complexes Polycomb et Trithorax au cours du développement précoce chez Ciona intestinalis
inferred← citeshttps://doi.org/10.70675/4ecc5292z54b9z4ab2z9a9azfe708ba670c3openalex-snapshot
Evolution of chordate development : a story of retinoic acid, hox genes and microRNAs
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