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Distinct mechanisms of cis-syn thymine dimer bypass by Dpo4 and DNA polymerase η

https://doi.org/10.1073/pnas.0504380102
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/0022-2836(82)90445-4openalex-snapshot
Determination of pyrimidine dimer unwinding angle by measurement of DNA electrophoretic mobility
inferredcites →https://doi.org/10.1016/0076-6879(95)62021-4openalex-snapshot
[19] Gel fidelity assay measuring nucleotide misinsertion, exonucleolytic proofreading, and lesion bypass efficiencies
inferredcites →https://doi.org/10.1016/s1097-2765(01)00306-9openalex-snapshot
Structure of the Catalytic Core of S. cerevisiae DNA Polymerase η
inferredcites →https://doi.org/10.1021/bi001446vopenalex-snapshot
Pyrene Nucleotide as a Mechanistic Probe: Evidence for a Transient Abasic Site-like Intermediate in the Bypass of Dipyrimidine Photoproducts by T7 DNA Polymerase
inferredcites →https://doi.org/10.1038/21447openalex-snapshot
The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η
inferredcites →https://doi.org/10.1038/34593openalex-snapshot
Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution
inferredcites →https://doi.org/10.1038/34693openalex-snapshot
Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal
inferredcites →https://doi.org/10.1038/nature01919openalex-snapshot
Replication of a cis–syn thymine dimer at atomic resolution
inferredcites →https://doi.org/10.1038/nature02352openalex-snapshot
Preferential cis–syn thymine dimer bypass by DNA polymerase η occurs with biased fidelity
inferredcites →https://doi.org/10.1038/nsmb755openalex-snapshot
Dpo4 is hindered in extending a G·T mismatch by a reverse wobble
inferredcites →https://doi.org/10.1038/nsmb792openalex-snapshot
Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7
inferredcites →https://doi.org/10.1073/pnas.050491997openalex-snapshot
Accuracy of thymine-thymine dimer bypass by Saccharomyces cerevisiae DNA polymerase eta
inferredcites →https://doi.org/10.1073/pnas.2134223100openalex-snapshot
Mechanism of nucleotide incorporation opposite a thymine-thymine dimer by yeast DNA polymerase η
inferredcites →https://doi.org/10.1073/pnas.242422699openalex-snapshot
Crystal structure of a DNA decamer containing a cis-syn thymine dimer
inferredcites →https://doi.org/10.1073/pnas.85.8.2558openalex-snapshot
Thymine dimers bend DNA.
inferredcites →https://doi.org/10.1073/pnas.97.7.3094openalex-snapshot
Accuracy of thymine–thymine dimer bypass by Saccharomyces cerevisiae DNA polymerase η
inferredcites →https://doi.org/10.1074/jbc.273.34.21933openalex-snapshot
The Ability of a Variety of Polymerases to Synthesize Past Site-specific cis-syn, trans-syn-II, (6–4), and Dewar Photoproducts of Thymidylyl-(3′→5′)-thymidine
inferredcites →https://doi.org/10.1074/jbc.274.23.15975openalex-snapshot
Requirement of DNA Polymerase Activity of Yeast Rad30 Protein for Its Biological Function
inferredcites →https://doi.org/10.1074/jbc.275.11.7447openalex-snapshot
Fidelity of Human DNA Polymerase η
inferredcites →https://doi.org/10.1074/jbc.m008021200openalex-snapshot
Inefficient Bypass of an Abasic Site by DNA Polymerase η
inferredcites →https://doi.org/10.1074/jbc.m211838200openalex-snapshot
Role of DNA Polymerase η in the UV Mutation Spectrum in Human Cells
inferredcites →https://doi.org/10.1074/jbc.m307361200openalex-snapshot
Minimal Methylated Substrate and Extended Substrate Range of Escherichia coli AlkB Protein, a 1-Methyladenine-DNA Dioxygenase
inferredcites →https://doi.org/10.1093/emboj/17.24.7514openalex-snapshot
Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation
inferredcites →https://doi.org/10.1093/genetics/147.4.1557openalex-snapshot
The Saccharomyces cerevisiae RAD30 Gene, a Homologue of Escherichia coli dinB and umuC, Is DNA Damage Inducible and Functions in a Novel Error-Free Postreplication Repair Mechanism
inferredcites →https://doi.org/10.1093/nar/15.11.4645openalex-snapshot
1H NMR study of the exchangeable protons of the duplex d(GCGTTGCG).d(CGCAACGC) containing a thymine photodimer containing a thymine photodimer
inferredcites →https://doi.org/10.1093/nar/29.22.4607openalex-snapshot
Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta
inferredcites →https://doi.org/10.1101/gad.1108603openalex-snapshot
Human DNA polymerase κ uses template–primer misalignment as a novel means for extending mispaired termini and for generating single-base deletions
inferredcites →https://doi.org/10.1111/1523-1747.ep12371686openalex-snapshot
Ultraviolet Hypermutablity of a Shuttle Vector Propagated in Xeroderma Pigmentosum Variant Cells
inferredcites →https://doi.org/10.1126/science.283.5404.1001openalex-snapshot
Efficient Bypass of a Thymine-Thymine Dimer by Yeast DNA Polymerase, Polη
inferredcites →https://doi.org/10.1126/science.285.5425.263openalex-snapshot
hRAD30 Mutations in the Variant Form of Xeroderma Pigmentosum
inferredcites →https://doi.org/10.1128/mcb.13.7.4276openalex-snapshot
Evidence from mutation spectra that the UV hypermutability of xeroderma pigmentosum variant cells reflects abnormal, error-prone replication on a template containing photoproducts.
inferredcites →https://doi.org/10.1128/mcb.13.7.4276-4283.1993openalex-snapshot
Evidence from Mutation Spectra that the UV Hypermutability of Xeroderma Pigmentosum Variant Cells Reflects Abnormal, Error-Prone Replication on a Template Containing Photoproducts
inferredcites →https://doi.org/10.1128/mcb.21.1.185-188.2001openalex-snapshot
Requirement of DNA Polymerase η for Error-Free Bypass of UV-Induced CC and TC Photoproducts
inferredcites →https://doi.org/10.1128/mcb.21.21.7199-7206.2001openalex-snapshot
Physical and Functional Interactions of Human DNA Polymerase η with PCNA
inferredcites →https://doi.org/10.1146/annurev.biochem.71.110601.135453openalex-snapshot
Active Site Tightness and Substrate Fit in DNA Replication
inferredcites →https://doi.org/10.1146/annurev.biochem.74.082803.133250openalex-snapshot
EUKARYOTIC TRANSLESION SYNTHESIS DNA POLYMERASES: Specificity of Structure and Function

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.3185110openalex-extracted
Phosphorylation Alters the Properties of Pol η: Implications for Translesion Synthesis and Cancer Etiology
inferred← citeshttps://doi.org/10.1002/9783527623112.ch5openalex-snapshot
Pyrimidine Dimers: UV‐Induced DNA Damage
inferred← citeshttps://doi.org/10.1002/mc.20417openalex-snapshot
Stimulation of sister chromatid exchanges and mutation by aflatoxin B1‐DNA adducts in Saccharomyces cerevisiae requires MEC1 (ATR), RAD53, and DUN1
inferred← citeshttps://doi.org/10.1007/978-3-642-39796-7_6openalex-snapshot
Archaeal DNA Polymerases: Enzymatic Abilities, Coordination, and Unique Properties
inferred← citeshttps://doi.org/10.1016/j.bbrc.2006.02.148openalex-snapshot
Hoogsteen base-pairing revisited: Resolving a role in normal biological processes and human diseases
inferred← citeshttps://doi.org/10.1016/j.dnarep.2014.07.012openalex-snapshot
Remarkable induction of UV-signature mutations at the 3′-cytosine of dipyrimidine sites except at 5′-TCG-3′ in the UVB-exposed skin epidermis of xeroderma pigmentosum variant model mice
inferred← citeshttps://doi.org/10.1016/j.isci.2018.07.009openalex-snapshot
Phosphorylation Alters the Properties of Pol η: Implications for Translesion Synthesis
inferred← citeshttps://doi.org/10.1016/j.jbc.2021.100868openalex-snapshot
DNA polymerase λ promotes error-free replication through Watson–Crick impairing N1-methyl-deoxyadenosine adduct in conjunction with DNA polymerase ζ
inferred← citeshttps://doi.org/10.1016/j.jmb.2010.01.007openalex-snapshot
Molecular Analyses of an Unusual Translesion DNA Polymerase from Methanosarcina acetivorans C2A
inferred← citeshttps://doi.org/10.1016/j.mrfmmm.2023.111840openalex-snapshot
The accurate bypass of pyrimidine dimers by DNA polymerase eta contributes to ultraviolet-induced mutagenesis
inferred← citeshttps://doi.org/10.1016/j.sbi.2011.03.008openalex-snapshot
DNA polymerases provide a canon of strategies for translesion synthesis past oxidatively generated lesions
inferred← citeshttps://doi.org/10.1016/s0076-6879(06)08024-4openalex-snapshot
Yeast and Human Translesion DNA Synthesis Polymerases: Expression, Purification, and Biochemical Characterization
inferred← citeshttps://doi.org/10.1021/bi052511+openalex-snapshot
Calcium Is a Cofactor of Polymerization but Inhibits Pyrophosphorolysis by the Sulfolobus solfataricus DNA Polymerase Dpo4
inferred← citeshttps://doi.org/10.1021/bi5000405openalex-snapshot
Recent Insight into the Kinetic Mechanisms and Conformational Dynamics of Y-Family DNA Polymerases
inferred← citeshttps://doi.org/10.1021/bi800529fopenalex-snapshot
Mutational Specificity of γ-Radiation-Induced Guanine−Thymine and Thymine−Guanine Intrastrand Cross-Links in Mammalian Cells and Translesion Synthesis Past the Guanine−Thymine Lesion by Human DNA Polymerase η
inferred← citeshttps://doi.org/10.1021/tx3002115openalex-snapshot
Identification of an Unfolding Intermediate for a DNA Lesion Bypass Polymerase
inferred← citeshttps://doi.org/10.1021/tx4002786openalex-snapshot
Mutagenicity and Genotoxicity of (5′S)-8,5′-Cyclo-2′-deoxyadenosine in Escherichia coli and Replication of (5′S)-8,5′-Cyclopurine-2′-deoxynucleosides in Vitro by DNA Polymerase IV, Exo-Free Klenow Fragment, and Dpo4
inferred← citeshttps://doi.org/10.1039/b603852mopenalex-snapshot
Nucleotides and nucleic acids; oligo- and polynucleotides
inferred← citeshttps://doi.org/10.1039/c6mb00160bopenalex-snapshot
Translesion synthesis past guanine(C8)–thymine(N3) intrastrand cross-links catalyzed by selected A- and Y-family polymerases
inferred← citeshttps://doi.org/10.1073/pnas.0605785103openalex-snapshot
Human DNA polymerase κ forms nonproductive complexes with matched primer termini but not with mismatched primer termini
inferred← citeshttps://doi.org/10.1073/pnas.0910121106openalex-snapshot
Highly error-free role of DNA polymerase η in the replicative bypass of UV-induced pyrimidine dimers in mouse and human cells
inferred← citeshttps://doi.org/10.1074/jbc.m115.693010openalex-snapshot
Genetic Control of Replication through N1-methyladenine in Human Cells
inferred← citeshttps://doi.org/10.1074/jbc.m510889200openalex-snapshot
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8-Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4
inferred← citeshttps://doi.org/10.1074/jbc.m808161200openalex-snapshot
Mechanistic Studies of the Bypass of a Bulky Single-base Lesion Catalyzed by a Y-family DNA Polymerase
inferred← citeshttps://doi.org/10.1080/10409238.2020.1768205openalex-snapshot
Mechanisms of mutagenesis induced by DNA lesions: multiple factors affect mutations in translesion DNA synthesis
inferred← citeshttps://doi.org/10.1093/nar/gkp386openalex-snapshot
Inhibition of translesion DNA polymerase by archaeal reverse gyrase
inferred← citeshttps://doi.org/10.1101/gad.351410.123openalex-snapshot
WRN exonuclease imparts high fidelity on translesion synthesis by Y family DNA polymerases
inferred← citeshttps://doi.org/10.1111/mec.13318openalex-snapshot
Biased introgression of mitochondrial and nuclear genes: a comparison of diploid and haplodiploid systems
inferred← citeshttps://doi.org/10.1128/jb.00408-19openalex-snapshot
Regulation of Cell Division in Bacteria by Monitoring Genome Integrity and DNA Replication Status
inferred← citeshttps://doi.org/10.17760/d20000043openalex-snapshot
Specificity of DNA damage inducible dna polymerase IV from Escherichia coli
inferred← citeshttps://doi.org/10.3389/fmicb.2020.01585openalex-snapshot
A Unique B-Family DNA Polymerase Facilitating Error-Prone DNA Damage Tolerance in Crenarchaeota
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