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Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae : Implications for the microbial “pan-genome”

https://doi.org/10.1073/pnas.0506758102
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease
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Upstream short sequence repeats regulate expression of the alpha C protein of group B Streptococcus
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Genomic insights that advance the species definition for prokaryotes
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Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae
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Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics
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Environmental Genome Shotgun Sequencing of the Sargasso Sea
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Diversity of the Human Intestinal Microbial Flora
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Genome Analysis Reveals Pili in Group B Streptococcus
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A Genomic Perspective on Protein Families
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Subtractive Hybridization Identifies a Novel Predicted Protein Mediating Epithelial Cell Invasion by Virulent Serotype III Group B Streptococcus agalactiae
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Structural and Genetic Diversity of Group BStreptococcusCapsular Polysaccharides
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Multiple-Locus Variable-Number Tandem Repeat Analysis Reveals Genetic Relationships within Bacillus anthracis
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The Serotype of Type Ia and III Group B Streptococci Is Determined by the Polymerase Gene within the Polycistronic Capsule Operon
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Sequencing of 16S rRNA Gene: A Rapid Tool for Identification ofBacillus anthracis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark
inferred← citeshttps://doi.org/10.1007/978-3-030-72365-1_7openalex-snapshot
Searching for an Identity: Functional Characterization of Taxonomically Restricted Genes in Grain Amaranth
inferred← citeshttps://doi.org/10.1007/978-3-030-80956-0_11openalex-snapshot
Moringa Functional Genomics: Implications of Long Read Sequencing Technologies
inferred← citeshttps://doi.org/10.1007/978-3-030-90383-1_8openalex-snapshot
Towards a Global Perspective of the Marine Microbiome
inferred← citeshttps://doi.org/10.1007/978-3-030-92174-3_33openalex-snapshot
Genetic and Genomic Approaches for Improved and Sustainable Brown Algal Cultivation
inferred← citeshttps://doi.org/10.1007/978-3-030-93390-6_3openalex-snapshot
Transposable Elements in Pines
inferred← citeshttps://doi.org/10.1007/978-3-030-96925-7_2openalex-snapshot
The Revolution of Omics Technology in Plant Science
inferred← citeshttps://doi.org/10.1007/978-3-031-05706-9_4openalex-snapshot
Resilient Cotton for Abiotic Stresses: Realizing Genetic Gains Through Translational Genomics
inferred← citeshttps://doi.org/10.1007/978-3-031-08491-1_1openalex-snapshot
Pseudomonas aeruginosa Pangenome: Core and Accessory Genes of a Highly Resourceful Opportunistic Pathogen
inferred← citeshttps://doi.org/10.1007/978-3-031-15568-0_2openalex-snapshot
Multiomics Approach for Crop Improvement Under Climate Change
inferred← citeshttps://doi.org/10.1007/978-3-031-15568-0_3openalex-snapshot
The Intervention of Multi-Omics Approaches for Developing Abiotic Stress Resistance in Cotton Crop Under Climate Change
inferred← citeshttps://doi.org/10.1007/978-3-031-16503-0_15openalex-snapshot
Species of Zymoseptoria (Dothideomycetes) as a Model System to Study Plant Pathogen Genome Evolution
inferred← citeshttps://doi.org/10.1007/978-3-031-21640-4_13openalex-snapshot
Maize Improvement Using Recent Omics Approaches
inferred← citeshttps://doi.org/10.1007/978-3-031-33957-8_7openalex-snapshot
Nutritional Enrichment in Legumes Through Omics Approaches
inferred← citeshttps://doi.org/10.1007/978-3-031-36502-7_7openalex-snapshot
Graph-Based Machine Learning Approaches for Pangenomics
inferred← citeshttps://doi.org/10.1007/978-3-031-37428-9_34openalex-snapshot
Orchestration of Omics Technologies for Crop Improvement
inferred← citeshttps://doi.org/10.1007/978-3-031-43980-3_10openalex-snapshot
From de Bruijn Graphs to Variation Graphs – Relationships Between Pangenome Models
inferred← citeshttps://doi.org/10.1007/978-3-031-50787-8_4openalex-snapshot
Structural Genomic Variations and Their Effects on Phenotypes in Populus
inferred← citeshttps://doi.org/10.1007/978-3-031-65986-7_7openalex-snapshot
Environmental Reservoirs, Genomic Epidemiology, and Mobile Genetic Elements
inferred← citeshttps://doi.org/10.1007/978-3-031-74897-4_8openalex-snapshot
Breeding Plants Resilient to Climate Change
inferred← citeshttps://doi.org/10.1007/978-3-031-75937-6_2openalex-snapshot
Genetic Engineering for Improving Quality, Productivity, and Value of Industrial Crops
inferred← citeshttps://doi.org/10.1007/978-3-032-01704-8_6openalex-snapshot
Crop Transcriptome Response for Abiotic Stress Tolerance
inferred← citeshttps://doi.org/10.1007/978-3-032-06497-4_26openalex-snapshot
The Pangenome Variability Index: A Quantitative Measure for Assessing Gene Content Diversity in Microbial Genomes
inferred← citeshttps://doi.org/10.1007/978-3-032-26891-4_2openalex-snapshot
Quantifying the Rearrangement Complexity of Pangenomes
inferred← citeshttps://doi.org/10.1007/978-3-211-75123-7_9openalex-snapshot
Annotating bacterial genomes
inferred← citeshttps://doi.org/10.1007/978-3-319-07623-2_8openalex-snapshot
Horizontal Gene Transfer and the Role of Restriction-Modification Systems in Bacterial Population Dynamics
inferred← citeshttps://doi.org/10.1007/978-3-319-13521-2_22openalex-snapshot
Experimental Microbial Evolution of Extremophiles
inferred← citeshttps://doi.org/10.1007/978-3-319-31198-2_4openalex-snapshot
Pseudomonas: Genome and Comparative Genomics
inferred← citeshttps://doi.org/10.1007/978-3-319-32274-2_20openalex-snapshot
Future Perspectives
inferred← citeshttps://doi.org/10.1007/978-3-319-44966-1_5openalex-snapshot
Species Concepts and Beyond: Selected Topics Relating to the Species Problem
inferred← citeshttps://doi.org/10.1007/978-3-319-48327-6_3openalex-snapshot
Divergence of Species in the Geothermal Environment
inferred← citeshttps://doi.org/10.1007/978-3-319-55426-6_13openalex-snapshot
Exploiting Nitrogen-Fixing Rhizobial Symbionts Genetic Resources for Improving Phytoremediation of Contaminated Soils
inferred← citeshttps://doi.org/10.1007/978-3-319-55804-2_10openalex-snapshot
Diversity and Function of Endophytic Microbial Community of Plants with Economical Potential
inferred← citeshttps://doi.org/10.1007/978-3-319-56148-6_57openalex-snapshot
On the Ability to Reconstruct Ancestral Genomes from Mycobacterium Genus
inferred← citeshttps://doi.org/10.1007/978-3-319-56154-7_4openalex-snapshot
Comprehensive Study of Instable Regions in Pseudomonas Aeruginosa
inferred← citeshttps://doi.org/10.1007/978-3-319-56970-3_4openalex-snapshot
Dynamic Alignment-Free and Reference-Free Read Compression
inferred← citeshttps://doi.org/10.1007/978-3-319-64198-0_4openalex-snapshot
Structural Variation and the Soybean Genome
inferred← citeshttps://doi.org/10.1007/978-3-319-66117-9_12openalex-snapshot
Future Prospects for Chickpea Research
inferred← citeshttps://doi.org/10.1007/978-3-319-77878-5_5openalex-snapshot
Using Genomics to Adapt Crops to Climate Change
inferred← citeshttps://doi.org/10.1007/978-3-319-93536-2_6openalex-snapshot
Breeding Brassica juncea and B. rapa for Sustainable Oilseed Production in the Changing Climate: Progress and Prospects
inferred← citeshttps://doi.org/10.1007/978-3-319-97427-9_2openalex-snapshot
The Maize Pan-Genome
inferred← citeshttps://doi.org/10.1007/978-3-319-97946-5_7openalex-snapshot
Genetic and Genomic Approaches for Adaptation of Grapevine to Climate Change
inferred← citeshttps://doi.org/10.1007/978-3-540-39026-8_1050openalex-snapshot
Streptococcus agalactiae
inferred← citeshttps://doi.org/10.1007/978-3-540-87989-3_7openalex-snapshot
An Alignment-Free Distance Measure for Closely Related Genomes
inferred← citeshttps://doi.org/10.1007/978-3-642-12340-5_6openalex-snapshot
Transferomics: Seeing the Evolutionary Forest Using Phylogenetic Trees
inferred← citeshttps://doi.org/10.1007/978-3-642-14512-4_1openalex-snapshot
Introduction: Key Levels of Biocommunication of Bacteria
inferred← citeshttps://doi.org/10.1007/978-3-642-14512-4_11openalex-snapshot
Population and Comparative Genomics Inform Our Understanding of Bacterial Species Diversity in the Soil
inferred← citeshttps://doi.org/10.1007/978-3-642-16750-8_15openalex-snapshot
Design of an Enterobacteriaceae Pan-Genome Microarray Chip
inferred← citeshttps://doi.org/10.1007/978-3-642-17158-1_12openalex-snapshot
Reiseimpfungen und allgemein empfohlene Impfungen
inferred← citeshttps://doi.org/10.1007/978-3-642-20838-6_3openalex-snapshot
Detection and Identification of Probiotic Microorganisms and Other Beneficial Organisms from the Human GI Tract
inferred← citeshttps://doi.org/10.1007/978-3-642-30194-0_15openalex-snapshot
Genomes and Post-genome Technology
inferred← citeshttps://doi.org/10.1007/978-3-7091-0709-6_2openalex-snapshot
Finding Protective Bacterial Antigens
inferred← citeshttps://doi.org/10.1007/978-3-7643-7567-6_12openalex-snapshot
Genomics of host-pathogen interactions
inferred← citeshttps://doi.org/10.1007/978-4-431-76690-2openalex-snapshot
Interface Oral Health Science 2007
inferred← citeshttps://doi.org/10.1007/978-4-431-76690-2_4openalex-snapshot
Characterisation of the human oral microbiome and metagenome
inferred← citeshttps://doi.org/10.1007/978-81-322-1880-7_14openalex-snapshot
Exploring the Genomes of Symbiotic Diazotrophs with Relevance to Biological Nitrogen Fixation
inferred← citeshttps://doi.org/10.1007/978-81-8489-992-4_8openalex-snapshot
Darwin and microbial evolution
inferred← citeshttps://doi.org/10.1007/978-90-481-3319-2_6openalex-snapshot
Bacteria Communication
inferred← citeshttps://doi.org/10.1007/978-90-481-9637-1_10openalex-snapshot
Pathoadaptation of Especially Dangerous Pathogens
inferred← citeshttps://doi.org/10.1007/978-94-007-0881-5_4openalex-snapshot
Functional Inference in Microbial Genomics Based on Large-Scale Comparative Analysis
inferred← citeshttps://doi.org/10.1007/978-94-007-4543-8_1openalex-snapshot
Design of New Vaccines in the Genomic and Post-genomic Era
inferred← citeshttps://doi.org/10.1007/978-94-017-9047-5_2openalex-snapshot
The Impact of Next-Generation Sequencing Technology on Bacterial Genomics
inferred← citeshttps://doi.org/10.1007/978-94-017-9118-2_12openalex-snapshot
Horizontal Gene Transfer in Microbial Ecosystems
inferred← citeshttps://doi.org/10.1007/978-94-024-0890-4_6openalex-snapshot
Genome and Evolution of Yersinia pestis
inferred← citeshttps://doi.org/10.1007/978-981-10-4086-3_176openalex-snapshot
Structural and functional genomics analysis of methyltransferase genes and networks associate to understand antibiotic resistance inside the pangenome of Pseudomonas aeruginosa
inferred← citeshttps://doi.org/10.1007/978-981-10-5050-3_2openalex-snapshot
Uncultivated Lineages and Host–Microbe Interaction in Saline Environment
inferred← citeshttps://doi.org/10.1007/978-981-10-7572-8_4openalex-snapshot
NGSPanPipe: A Pipeline for Pan-genome Identification in Microbial Strains from Experimental Reads
inferred← citeshttps://doi.org/10.1007/978-981-13-3411-5_5openalex-snapshot
Bacteria–Virus Interactions
inferred← citeshttps://doi.org/10.1007/978-981-13-7832-4_3openalex-snapshot
Comparative Genomic Analyses of Lactic Acid Bacteria
inferred← citeshttps://doi.org/10.1007/978-981-13-8315-1_2openalex-snapshot
Bioinformatics Tools for Microbial Diversity Analysis
inferred← citeshttps://doi.org/10.1007/978-981-13-8315-1_3openalex-snapshot
Application of Genomics to Understand the Pathogenic Microbial Diversity
inferred← citeshttps://doi.org/10.1007/978-981-13-8739-5_2openalex-snapshot
Bacterial Pan-Genomics
inferred← citeshttps://doi.org/10.1007/978-981-15-0156-2_3openalex-snapshot
Molecular Approaches for Harvesting Natural Diversity for Crop Improvement
inferred← citeshttps://doi.org/10.1007/978-981-16-0862-9_1openalex-snapshot
Principles of Host Resistance
inferred← citeshttps://doi.org/10.1007/978-981-16-1974-8_1openalex-snapshot
Molecular Mechanisms of Disease Resistance
inferred← citeshttps://doi.org/10.1007/978-981-16-2956-3_8openalex-snapshot
Integrating Pan-Omics Data in a Systems Approach for Crop Improvement: Opportunities and Challenges
inferred← citeshttps://doi.org/10.1007/978-981-16-6974-3_8openalex-snapshot
Whole-Genome Sequencing of Plants: Past, Present, and Future
inferred← citeshttps://doi.org/10.1007/978-981-19-0928-3_10openalex-snapshot
Molecular Approaches in Conservation and Restoration of Agrobiodiversity
inferred← citeshttps://doi.org/10.1007/978-981-19-3627-2_12-1openalex-snapshot
Nutraceuticals in Soybean: Biosynthesis, Advanced Genetic Research, and Usage in Food
inferred← citeshttps://doi.org/10.1007/978-981-19-4169-6_12openalex-snapshot
Nutraceuticals in Soybean: Biosynthesis, Advanced Genetic Research, and Usage in Food
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