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Conservation of enhancer location in divergent insects

https://doi.org/10.1073/pnas.0905754106
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/neu.20104openalex-snapshot
CNS midline cells contribute to maintenance of the initial dorsoventral patterning of theDrosophila ventral neuroectoderm
inferredcites →https://doi.org/10.1006/dbio.2002.0652openalex-snapshot
Dorsal Gradient Networks in the Drosophila Embryo
inferredcites →https://doi.org/10.1007/s00427-004-0446-9openalex-snapshot
Tribolium castaneum twist: gastrulation and mesoderm formation in a short-germ beetle
inferredcites →https://doi.org/10.1007/s00427-008-0213-4openalex-snapshot
Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters
inferredcites →https://doi.org/10.1016/0092-8674(88)90537-5openalex-snapshot
Molecular genetics of the single-minded locus: A gene involved in the development of the Drosophila nervous system
inferredcites →https://doi.org/10.1016/0092-8674(88)90538-7openalex-snapshot
The Drosophila single-minded gene encodes a nuclear protein with sequence similarity to the per gene product
inferredcites →https://doi.org/10.1016/0092-8674(92)90181-bopenalex-snapshot
Multiple extracellular activities in Drosophila egg perivitelline fluid are required for establishment of embryonic dorsal-ventral polarity
inferredcites →https://doi.org/10.1016/0925-4773(94)90036-1openalex-snapshot
The bipartite D. melanogaster twist promoter is reorganized in D. virilis
inferredcites →https://doi.org/10.1016/j.cub.2005.02.057openalex-snapshot
Distinct Functions of the Tribolium zerknu¨llt Genes in Serosa Specification and Dorsal Closure
inferredcites →https://doi.org/10.1016/j.cub.2005.10.026openalex-snapshot
Dorsoventral Axis Formation in the Drosophila Embryo—Shaping and Transducing a Morphogen Gradient
inferredcites →https://doi.org/10.1016/j.cub.2006.05.044openalex-snapshot
Computational Models for Neurogenic Gene Expression in the Drosophila Embryo
inferredcites →https://doi.org/10.1016/j.devcel.2006.10.012openalex-snapshot
Evolution of the Ventral Midline in Insect Embryos
inferredcites →https://doi.org/10.1016/j.devcel.2008.02.011openalex-snapshot
Self-Regulatory Circuits in Dorsoventral Axis Formation of the Short-Germ Beetle Tribolium castaneum
inferredcites →https://doi.org/10.1016/j.ydbio.2004.06.011openalex-snapshot
Creation of cis-regulatory elements during sea urchin evolution by co-option and optimization of a repetitive sequence adjacent to the spec2a gene
inferredcites →https://doi.org/10.1016/s0092-8674(00)80660-1openalex-snapshot
The Drosophila Gene brinker Reveals a Novel Mechanism of Dpp Target Gene Regulation
inferredcites →https://doi.org/10.1016/s0092-8674(02)01087-5openalex-snapshot
Whole-Genome Analysis of Dorsal-Ventral Patterning in the Drosophila Embryo
inferredcites →https://doi.org/10.1016/s0925-4773(99)00041-6openalex-snapshot
Toll homolog expression in the beetle Tribolium suggests a different mode of dorsoventral patterning than in Drosophila embryos
inferredcites →https://doi.org/10.1016/s0959-437x(00)00252-5openalex-snapshot
Evolution of novel genes
inferredcites →https://doi.org/10.1016/s0959-437x(02)00355-6openalex-snapshot
Functional evolution of noncoding DNA
inferredcites →https://doi.org/10.1038/nature07388openalex-snapshot
The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila
inferredcites →https://doi.org/10.1073/pnas.012591199openalex-snapshot
Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo
inferredcites →https://doi.org/10.1073/pnas.0400611101openalex-snapshot
Coordinate enhancers share common organizational features in the Drosophila genome
inferredcites →https://doi.org/10.1073/pnas.0605154103openalex-snapshot
Sog/Chordin is required for ventral-to-dorsal Dpp/BMP transport and head formation in a short germ insect
inferredcites →https://doi.org/10.1073/pnas.0611511104openalex-snapshot
An optimized transgenesis system for Drosophila using germ-line-specific φC31 integrases
inferredcites →https://doi.org/10.1093/genetics/166.4.1775openalex-snapshot
Construction of Transgenic Drosophila by Using the Site-Specific Integrase From Phage φC31
inferredcites →https://doi.org/10.1101/gad.1509007openalex-snapshot
A core transcriptional network for early mesoderm development in Drosophila melanogaster
inferredcites →https://doi.org/10.1101/gad.1509607openalex-snapshot
Whole-genome ChIP–chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo
inferredcites →https://doi.org/10.1101/gad.5.10.1881openalex-snapshot
The dorsal morphogen gradient regulates the mesoderm determinant twist in early Drosophila embryos.
inferredcites →https://doi.org/10.1101/gad.5.10.1892openalex-snapshot
Functional analysis of the Drosophila twist promoter reveals a dorsal-binding ventral activator region.
inferredcites →https://doi.org/10.1101/gad.6.9.1728openalex-snapshot
The dorsal gradient morphogen regulates stripes of rhomboid expression in the presumptive neuroectoderm of the Drosophila embryo.
inferredcites →https://doi.org/10.1101/gad.8.21.2602openalex-snapshot
Dorsal-ventral patterning of the Drosophila embryo depends on a putative negative growth factor encoded by the short gastrulation gene.
inferredcites →https://doi.org/10.1101/gr.5108606openalex-snapshot
Patterns of conservation and change in honey bee developmental genes
inferredcites →https://doi.org/10.1126/science.1077061openalex-snapshot
Comparative Genome and Proteome Analysis of Anopheles gambiae and Drosophila melanogaster
inferredcites →https://doi.org/10.1126/science.1085753openalex-snapshot
Organizing Axes in Time and Space; 25 Years of Colinear Tinkering
inferredcites →https://doi.org/10.1126/science.1099247openalex-snapshot
Multiplex Detection of RNA Expression in Drosophila Embryos
inferredcites →https://doi.org/10.1126/science.1160631openalex-snapshot
Shadow Enhancers as a Source of Evolutionary Novelty
inferredcites →https://doi.org/10.1126/science.860134openalex-snapshot
Evolution and Tinkering
inferredcites →https://doi.org/10.1242/dev.01124openalex-snapshot
A regulatory code for neurogenic gene expression in theDrosophilaembryo
inferredcites →https://doi.org/10.1242/dev.02373openalex-snapshot
The TAGteam DNA motif controls the timing of Drosophila pre-blastoderm transcription
inferredcites →https://doi.org/10.1242/dev.02863openalex-snapshot
Evolution of the dorsal-ventral patterning network in the mosquito, Anopheles gambiae
inferredcites →https://doi.org/10.1242/dev.112.2.371openalex-snapshot
cactus, a maternal gene required for proper formation of the dorsoventral morphogen gradient in Drosophila embryos
inferredcites →https://doi.org/10.1242/dev.122.11.3363openalex-snapshot
The Drosophila embryonic midline is the site of Spitz processing, and induces activation of the EGF receptor in the ventral ectoderm
inferredcites →https://doi.org/10.1242/dev.127.23.5145openalex-snapshot
The maternal NF-κB/Dorsal gradient of Tribolium castaneum: dynamics of early dorsoventral patterning in a short-germ beetle
inferredcites →https://doi.org/10.1242/dev.129.14.3411openalex-snapshot
Linear signaling in the Toll-Dorsal pathway ofDrosophila: activated Pelle kinase specifies all threshold outputs of gene expression while the bHLH protein Twist specifies a subset
inferredcites →https://doi.org/10.1371/journal.pbio.0060263openalex-snapshot
Evolution Acts on Enhancer Organization to Fine-Tune Gradient Threshold Readouts
inferredcites →https://doi.org/10.1371/journal.pgen.1000106openalex-snapshot
Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
inferredcites →https://doi.org/10.1387/ijdb.11669373openalex-snapshot
The CNS midline cells control the spitz class and Egfr signaling genes to establish the proper cell fate of the Drosophila ventral neuroectoderm
inferredcites →https://doi.org/10.1534/genetics.166.4.1775openalex-snapshot
Construction of Transgenic Drosophila by Using the Site-Specific Integrase From Phage C31

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.3155922openalex-extracted
Pleiotropy in Enhancer Function Is Encoded through Diverse Genetic Architectures
inferred← citeshttps://doi.org/10.2139/ssrn.4186258openalex-extracted
Transcriptional Regulatory Activity as the Default State for DNA in Animal Development
inferred← citeshttps://doi.org/10.1002/bies.201100121openalex-snapshot
Shadow enhancers: Frequently asked questions about distributed cis‐regulatory information and enhancer redundancy
inferred← citeshttps://doi.org/10.1002/dvdy.23871openalex-snapshot
Multiple layers of complexity in cis‐regulatory regions of developmental genes
inferred← citeshttps://doi.org/10.1002/dvg.22403openalex-snapshot
Gene regulatory evolution and the origin of macroevolutionary novelties: Insights from the neural crest
inferred← citeshttps://doi.org/10.1002/wdev.3openalex-snapshot
Comparisons of the embryonic development of Drosophila, Nasonia, and Tribolium
inferred← citeshttps://doi.org/10.1007/978-1-61779-228-1_21openalex-snapshot
Experimental Approaches to Evaluate the Contributions of Candidate Cis-regulatory Mutations to Phenotypic Evolution
inferred← citeshttps://doi.org/10.1007/978-3-319-24235-4_6openalex-snapshot
Insect Regulatory Genomics
inferred← citeshttps://doi.org/10.1007/s11010-023-04712-4openalex-snapshot
Prediction and analysis of cis-regulatory elements in Dorsal and Ventral patterning genes of Tribolium castaneum and its comparison with Drosophila melanogaster
inferred← citeshttps://doi.org/10.1016/j.celrep.2018.02.073openalex-snapshot
Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function
inferred← citeshttps://doi.org/10.1016/j.cub.2015.11.034openalex-snapshot
Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks
inferred← citeshttps://doi.org/10.1016/j.devcel.2022.12.003openalex-snapshot
Enhancer architecture and chromatin accessibility constrain phenotypic space during Drosophila development
inferred← citeshttps://doi.org/10.1016/j.gde.2009.10.006openalex-snapshot
Comparative genomics of gene regulation—conservation and divergence of cis-regulatory information
inferred← citeshttps://doi.org/10.1016/j.semcdb.2015.12.003openalex-snapshot
Favorable genomic environments for cis-regulatory evolution: A novel theoretical framework
inferred← citeshttps://doi.org/10.1016/j.tig.2009.12.003openalex-snapshot
Mechanisms of transcription factor selectivity
inferred← citeshttps://doi.org/10.1016/j.ydbio.2010.01.035openalex-snapshot
Cis-regulatory characterization of sequence conservation surrounding the Hox4 genes
inferred← citeshttps://doi.org/10.1016/j.ydbio.2016.06.031openalex-snapshot
Redeployment of a conserved gene regulatory network during Aedes aegypti development
inferred← citeshttps://doi.org/10.1016/j.ydbio.2019.01.003openalex-snapshot
Evolution of embryonic cis-regulatory landscapes between divergent Phallusia and Ciona ascidians
inferred← citeshttps://doi.org/10.1038/ng.808openalex-snapshot
High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species
inferred← citeshttps://doi.org/10.1038/nrg3095openalex-snapshot
Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence
inferred← citeshttps://doi.org/10.1038/nrg3207openalex-snapshot
Transcription factors: from enhancer binding to developmental control
inferred← citeshttps://doi.org/10.1073/pnas.1207715109openalex-snapshot
Conserved regulatory architecture underlies parallel genetic changes and convergent phenotypic evolution
inferred← citeshttps://doi.org/10.1093/bfgp/els041openalex-snapshot
Capturing the regulatory interactions of eukaryote genomes
inferred← citeshttps://doi.org/10.1093/gbe/evu184openalex-snapshot
Evidence for Deep Regulatory Similarities in Early Developmental Programs across Highly Diverged Insects
inferred← citeshttps://doi.org/10.1098/rstb.2013.0020openalex-snapshot
Deep conservation of cis -regulatory elements in metazoans
inferred← citeshttps://doi.org/10.1098/rstb.2013.0028openalex-snapshot
The structure and evolution of cis -regulatory regions: the shavenbaby story
inferred← citeshttps://doi.org/10.1101/005173openalex-snapshot
Locus architecture affects mRNA expression levels in Drosophila embryos
inferred← citeshttps://doi.org/10.1101/2020.04.17.046052openalex-snapshot
Dense encoding of developmental regulatory information may constrain evolvability
inferred← citeshttps://doi.org/10.1101/2022.06.02.494376openalex-snapshot
Enhancer architecture and chromatin accessibility constrain phenotypic space during development
inferred← citeshttps://doi.org/10.1101/gad.2010711openalex-snapshot
The evolution of dorsal–ventral patterning mechanisms in insects
inferred← citeshttps://doi.org/10.1101/sqb.2009.74.021openalex-snapshot
Evolution of Insect Dorsoventral Patterning Mechanisms
inferred← citeshttps://doi.org/10.1111/eva.12939openalex-snapshot
Evaluating the probability of CRISPR‐based gene drive contaminating another species
inferred← citeshttps://doi.org/10.1111/imb.12574openalex-snapshot
Modular cis ‐regulatory logic of yellow gene expression in silkmoth larvae
inferred← citeshttps://doi.org/10.1111/imb.12705openalex-snapshot
Identification of new Anopheles gambiae transcriptional enhancers using a cross‐species prediction approach
inferred← citeshttps://doi.org/10.1111/j.1600-065x.2012.01096.xopenalex-snapshot
NF‐κB: where did it come from and why?
inferred← citeshttps://doi.org/10.1186/2041-9139-5-38openalex-snapshot
Toll signals regulate dorsal–ventral patterning and anterior–posterior placement of the embryo in the hemipteran Rhodnius prolixus
inferred← citeshttps://doi.org/10.1186/s12862-015-0499-6openalex-snapshot
Analysis of 5’ gene regions reveals extraordinary conservation of novel non-coding sequences in a wide range of animals
inferred← citeshttps://doi.org/10.1242/dev.160663openalex-snapshot
Enhancer identification and activity evaluation in the red flour beetle, Tribolium castaneum
inferred← citeshttps://doi.org/10.1242/jeb.212241openalex-snapshot
How to study enhancers in non-traditional insect models
inferred← citeshttps://doi.org/10.1371/journal.pgen.1001222openalex-snapshot
Nomadic Enhancers: Tissue-Specific cis-Regulatory Elements of yellow Have Divergent Genomic Positions among Drosophila Species
inferred← citeshttps://doi.org/10.1371/journal.pgen.1004435openalex-snapshot
Pervasive Divergence of Transcriptional Gene Regulation in Caenorhabditis Nematodes
inferred← citeshttps://doi.org/10.1371/journal.pgen.1006052openalex-snapshot
Predicting Ancestral Segmentation Phenotypes from Drosophila to Anopheles Using In Silico Evolution
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007581openalex-snapshot
Cooperation, cis-interactions, versatility and evolutionary plasticity of multiple cis-acting elements underlie krox20 hindbrain regulation
inferred← citeshttps://doi.org/10.1371/journal.pgen.1010891openalex-snapshot
Conserved and novel enhancers in the Aedes aegypti single-minded locus recapitulate embryonic ventral midline gene expression
inferred← citeshttps://doi.org/10.1371/journal.pgen.1011174openalex-snapshot
Extreme restructuring of cis-regulatory regions controlling a deeply conserved plant stem cell regulator
inferred← citeshttps://doi.org/10.1534/g3.116.032029openalex-snapshot
Sensitivity of Allelic Divergence to Genomic Position: Lessons from the Drosophila tan Gene
inferred← citeshttps://doi.org/10.1534/genetics.119.301985openalex-snapshot
Redundant and Cryptic Enhancer Activities of the Drosophila yellow Gene
inferred← citeshttps://doi.org/10.3389/fgene.2020.602949openalex-snapshot
Chromatin Structure and Function in Mosquitoes
inferred← citeshttps://doi.org/10.3389/fgene.2021.785934openalex-snapshot
Comprehensive Genomic Discovery of Non-Coding Transcriptional Enhancers in the African Malaria Vector Anopheles coluzzii
inferred← citeshttps://doi.org/10.3389/fimmu.2022.864314openalex-snapshot
Proximal and Distal Regions of Pathogenic Th17 Related Chromatin Loci Are Sequentially Accessible During Pathogenicity of Th17
inferred← citeshttps://doi.org/10.3390/insects12070591openalex-snapshot
Annotating the Insect Regulatory Genome
inferred← citeshttps://doi.org/10.70675/6da04ca8z76d8z4fd4z9f55zde97179c8e99openalex-snapshot
Evolution of regulation of ascidian species
inferred← citeshttps://doi.org/10.7554/elife.84969openalex-snapshot
How enhancers regulate wavelike gene expression patterns
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