On the public citation graph
Early evolution of the T-box transcription factor family
0 signed · 133 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1521-1878(199801)20:1<9::aid-bies4>3.0.co;2-qopenalex-snapshot
The T-box gene family
inferredcites →https://doi.org/10.1002/bies.1114openalex-snapshot
Brachyury, the blastopore and the evolution of the mesoderm
inferredcites →https://doi.org/10.1002/bies.20387openalex-snapshot
When Brachyury meets Smad1: the evolution of bilateral symmetry during gastrulation
inferredcites →https://doi.org/10.1002/dvdy.10480openalex-snapshot
T‐box genes in early embryogenesis
inferredcites →https://doi.org/10.1002/j.1460-2075.1993.tb05990.xopenalex-snapshot
The Brachyury gene encodes a novel DNA binding protein.
inferredcites →https://doi.org/10.1002/j.1460-2075.1993.tb06179.xopenalex-snapshot
Correction to: The Brachyury gene encodes a novel DNA binding protein.
inferredcites →https://doi.org/10.1007/978-1-60327-483-8_47openalex-snapshot
Wholemount In Situ Hybridization to Xenopus Embryos
inferredcites →https://doi.org/10.1007/s00427-002-0272-xopenalex-snapshot
The ancestral role of Brachyury: expression of NemBra1 in the basal cnidarian Nematostella vectensis (Anthozoa)
inferredcites →https://doi.org/10.1007/s00427-003-0345-5openalex-snapshot
Isolation and characterization of two T-box genes from sponges, the phylogenetically oldest metazoan taxon
inferredcites →https://doi.org/10.1007/s00427-010-0344-2openalex-snapshot
Expansion, diversification, and expression of T-box family genes in Porifera
inferredcites →https://doi.org/10.1016/0092-8674(93)90247-nopenalex-snapshot
Expression of an extracellular deletion of Xotch diverts cell fate in Xenopus embryos
inferredcites →https://doi.org/10.1016/j.cell.2011.10.053openalex-snapshot
Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins
inferredcites →https://doi.org/10.1016/j.cub.2004.10.037openalex-snapshot
Capsaspora owczarzaki is an independent opisthokont lineage
inferredcites →https://doi.org/10.1016/j.cub.2009.02.052openalex-snapshot
Phylogenomics Revives Traditional Views on Deep Animal Relationships
inferredcites →https://doi.org/10.1016/j.devcel.2005.03.001openalex-snapshot
Functional Specificity of the Xenopus T-Domain Protein Brachyury Is Conferred by Its Ability to Interact with Smad1
inferredcites →https://doi.org/10.1016/j.febslet.2005.08.008openalex-snapshot
T‐box and homeobox genes from the ctenophore Pleurobrachia pileus: Comparison of Brachyury, Tbx2/3 and Tlx in basal metazoans and bilaterians
inferredcites →https://doi.org/10.1016/j.gene.2004.07.021openalex-snapshot
Comparative analysis of Brachyury T-domains, with the characterization of two new sponge sequences, from a hexactinellid and a calcisponge
inferredcites →https://doi.org/10.1016/j.ydbio.2009.12.019openalex-snapshot
Highly conserved functions of the Brachyury gene on morphogenetic movements: Insight from the early-diverging phylum Ctenophora
inferredcites →https://doi.org/10.1016/s0012-1606(03)00244-6openalex-snapshot
Evolution of Brachyury proteins: identification of a novel regulatory domain conserved within Bilateria
inferredcites →https://doi.org/10.1016/s0074-7696(01)07002-4openalex-snapshot
T-box genes in development: From hydra to humans
inferredcites →https://doi.org/10.1016/s0168-9525(00)89129-5openalex-snapshot
Normal table of Xenopus laevis (Daudin)
inferredcites →https://doi.org/10.1016/s0168-9525(99)01693-5openalex-snapshot
T-box genes: what they do and how they do it
inferredcites →https://doi.org/10.1038/nature06614openalex-snapshot
Broad phylogenomic sampling improves resolution of the animal tree of life
inferredcites →https://doi.org/10.1038/nature06617openalex-snapshot
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans
inferredcites →https://doi.org/10.1038/nbt1246openalex-snapshot
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
inferredcites →https://doi.org/10.1038/nprot.2008.195openalex-snapshot
Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors
inferredcites →https://doi.org/10.1080/21501203.2011.584577openalex-snapshot
Fueling the future with fungal genomics
inferredcites →https://doi.org/10.1083/jcb.101.3.1094openalex-snapshot
Translation of mRNA injected into Xenopus oocytes is specifically inhibited by antisense RNA.
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.755openalex-snapshot
Profile hidden Markov models.
inferredcites →https://doi.org/10.1093/emboj/17.1.181openalex-snapshot
Xiro, a Xenopus homolog of the Drosophila Iroquois complex genes, controls development at the neural plate
inferredcites →https://doi.org/10.1093/molbev/msn047openalex-snapshot
Genesis and Expansion of Metazoan Transcription Factor Gene Classes
inferredcites →https://doi.org/10.1093/molbev/msq089openalex-snapshot
Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships
inferredcites →https://doi.org/10.1093/molbev/msq309openalex-snapshot
Unexpected Repertoire of Metazoan Transcription Factors in the Unicellular Holozoan Capsaspora owczarzaki
inferredcites →https://doi.org/10.1093/molbev/msr185openalex-snapshot
Phylogenetic Relationships within the Opisthokonta Based on Phylogenomic Analyses of Conserved Single-Copy Protein Domains
inferredcites →https://doi.org/10.1093/nar/gkq617openalex-snapshot
Genomic repertoires of DNA-binding transcription factors across the tree of life
inferredcites →https://doi.org/10.1098/rspb.2009.0896openalex-snapshot
Assessing the root of bilaterian animals with scalable phylogenomic methods
inferredcites →https://doi.org/10.1101/gad.8.12.1434openalex-snapshot
Expression of achaete-scute homolog 3 in Xenopus embryos converts ectodermal cells to a neural fate.
inferredcites →https://doi.org/10.1126/science.1162327openalex-snapshot
Diversity and Complexity in DNA Recognition by Transcription Factors
inferredcites →https://doi.org/10.1186/1471-2164-7-239openalex-snapshot
Coding limits on the number of transcription factors
inferredcites →https://doi.org/10.1242/dev.010173openalex-snapshot
Divergent functions of two ancientHydra Brachyuryparalogues suggest specific roles for their C-terminal domains in tissue fate induction
inferredcites →https://doi.org/10.1242/dev.024703openalex-snapshot
Identification of direct T-box target genes in the developing zebrafish mesoderm
inferredcites →https://doi.org/10.1242/dev.122.8.2427openalex-snapshot
Inhibition of Xbra transcription activation causes defects in mesodermal patterning and reveals autoregulation of Xbra in dorsal mesoderm
inferredcites →https://doi.org/10.1242/dev.125.19.3887openalex-snapshot
The T-box transcription factor Brachyury regulates expression of eFGF through binding to a non-palindromic response element
inferredcites →https://doi.org/10.1242/dev.128.19.3749openalex-snapshot
Determinants of T box protein specificity
inferredcites →https://doi.org/10.1242/dev.128.2.167openalex-snapshot
Maternal VegT is the initiator of a molecular network specifying endoderm in Xenopus laevis
inferredcites →https://doi.org/10.1371/journal.pone.0002098openalex-snapshot
Multigene Phylogeny of Choanozoa and the Origin of Animals
inferredcites →https://doi.org/10.1385/1-59259-270-8:635openalex-snapshot
Wholemount In Situ Hybridization to Xenopus Embryos
inferredcites →https://doi.org/10.2307/1439568openalex-snapshot
Normal Table of Xenopus Laevis (Daudin)
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/s13127-022-00569-5zenodo-depositor-declared
A mosaic of conserved and novel modes of gene expression and morphogenesis in mesoderm and muscle formation of a larval bivalve
inferred← citeshttps://doi.org/10.1002/9780470015902.a0024329openalex-snapshot
Molecular Genetics of Holt–Oram Syndrome
inferred← citeshttps://doi.org/10.1002/9780470015902.a0026975openalex-snapshot
T ‐Box Genes: Developmental Functions in Mammals
inferred← citeshttps://doi.org/10.1002/cam4.70303openalex-snapshot
A High‐Throughput Drug Repurposing Strategy to Treat TBX2 and/or TBX3 Dependent Cancers
inferred← citeshttps://doi.org/10.1002/jcb.30188openalex-snapshot
Role of T‐box genes in cancer, epithelial‐mesenchymal transition, and cancer stem cells
inferred← citeshttps://doi.org/10.1002/mrd.70121openalex-snapshot
Developmental Expression of Transcription Factors and Wnt Ligands in Sponge Halisarca Dujardinii
inferred← citeshttps://doi.org/10.1007/5584_2021_618openalex-snapshot
The Non-continuum Nature of Eukaryotic Transcriptional Regulation
inferred← citeshttps://doi.org/10.1007/978-3-030-18202-1_2openalex-snapshot
The Protistan Cellular and Genomic Roots of Animal Multicellularity
inferred← citeshttps://doi.org/10.1007/978-3-030-30363-1_7openalex-snapshot
A Look Back Over 20 Years of Evo-Devo Studies on Sponges: A Challenged View of Urmetazoa
inferred← citeshttps://doi.org/10.1007/978-4-431-56603-8_12openalex-snapshot
Transcription Factor Genes
inferred← citeshttps://doi.org/10.1007/978-94-017-9642-2_18openalex-snapshot
Transcription Factors and the Origin of Animal Multicellularity
inferred← citeshttps://doi.org/10.1007/978-94-017-9642-2_3openalex-snapshot
Origin of Metazoan Developmental Toolkits and Their Expression in the Fossil Record
inferred← citeshttps://doi.org/10.1007/s00427-018-0618-7openalex-snapshot
Penaeid shrimp brachyury: sequence analysis and expression during gastrulation
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2016.06.002openalex-snapshot
T-Box Genes in the Kidney and Urinary Tract
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2016.06.003openalex-snapshot
T-Box Genes in Drosophila Mesoderm Development
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2016.06.004openalex-snapshot
Evolution and Classification of the T-Box Transcription Factor Family
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2016.07.012openalex-snapshot
Cooperation Between T-Box Factors Regulates the Continuous Segregation of Germ Layers During Vertebrate Embryogenesis
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2016.08.003openalex-snapshot
T-Box Genes in Drosophila Limb Development
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2016.08.005openalex-snapshot
The Remarkably Diverse Family of T-Box Factors in Caenorhabditis elegans
inferred← citeshttps://doi.org/10.1016/j.bbamcr.2021.119121openalex-snapshot
Tracing the evolutionary history of Ca2+-signaling modulation by human Bcl-2: Insights from the Capsaspora owczarzaki IP3 receptor ortholog
inferred← citeshttps://doi.org/10.1016/j.cdev.2023.203896openalex-snapshot
Never-ending story of Brachyury: From short-tailed mice to tailless primates
inferred← citeshttps://doi.org/10.1016/j.cell.2016.03.034openalex-snapshot
The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity
inferred← citeshttps://doi.org/10.1016/j.celrep.2022.110364openalex-snapshot
Uncovering the mesendoderm gene regulatory network through multi-omic data integration
inferred← citeshttps://doi.org/10.1016/j.cub.2017.06.006openalex-snapshot
Novel Predators Reshape Holozoan Phylogeny and Reveal the Presence of a Two-Component Signaling System in the Ancestor of Animals
inferred← citeshttps://doi.org/10.1016/j.cub.2017.08.054openalex-snapshot
Embracing Uncertainty in Reconstructing Early Animal Evolution
inferred← citeshttps://doi.org/10.1016/j.fsi.2025.110549openalex-snapshot
CgBrachyury regulates haemocyte proliferation as a target gene of CgWnt signal in oyster Crassostrea gigas
inferred← citeshttps://doi.org/10.1016/j.gde.2016.05.026openalex-snapshot
Sponges as models to study emergence of complex animals
inferred← citeshttps://doi.org/10.1016/j.gde.2019.07.010openalex-snapshot
Origin and evolution of eukaryotic transcription factors
inferred← citeshttps://doi.org/10.1016/j.margen.2015.07.008openalex-snapshot
Comparative analyses of developmental transcription factor repertoires in sponges reveal unexpected complexity of the earliest animals
inferred← citeshttps://doi.org/10.1016/j.mod.2017.02.001openalex-snapshot
How complexity increases in development: An analysis of the spatial-temporal dynamics of Gene expression in Ciona intestinalis
inferred← citeshttps://doi.org/10.1016/j.mod.2020.103625openalex-snapshot
Brachyury in the gastrula of basal vertebrates
inferred← citeshttps://doi.org/10.1016/j.tig.2021.04.008openalex-snapshot
Evolutionary cell type mapping with single-cell genomics
inferred← citeshttps://doi.org/10.1016/j.xcrm.2020.100188openalex-snapshot
Targeted brachyury degradation disrupts a highly specific autoregulatory program controlling chordoma cell identity
inferred← citeshttps://doi.org/10.1016/j.ydbio.2015.01.006openalex-snapshot
The organizer in evolution–gastrulation and organizer gene expression highlight the importance of Brachyury during development of the coral, Acropora millepora
inferred← citeshttps://doi.org/10.1016/j.ydbio.2016.09.017openalex-snapshot
Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis
inferred← citeshttps://doi.org/10.1016/j.ydbio.2023.03.002openalex-snapshot
The transcription factor optomotor-blind restricts apterous expression through TrxG and PcG genes
inferred← citeshttps://doi.org/10.1038/labinvest.2017.134openalex-snapshot
Characterization of a group I Nme protein of Capsaspora owczarzaki—a close unicellular relative of animals
inferred← citeshttps://doi.org/10.1038/ncomms4905openalex-snapshot
Developmental gene expression provides clues to relationships between sponge and eumetazoan body plans
inferred← citeshttps://doi.org/10.1038/nrg.2017.21openalex-snapshot
The origin of Metazoa: a unicellular perspective
inferred← citeshttps://doi.org/10.1038/s41467-023-42151-3openalex-snapshot
Conserved enhancers control notochord expression of vertebrate Brachyury
inferred← citeshttps://doi.org/10.1038/s41559-019-0833-2openalex-snapshot
The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle
inferred← citeshttps://doi.org/10.1038/s41559-022-01905-wopenalex-snapshot
An ancestral Wnt–Brachyury feedback loop in axial patterning and recruitment of mesoderm-determining target genes
inferred← citeshttps://doi.org/10.1038/s41576-025-00864-9openalex-snapshot
The evolutionary foundations of transcriptional regulation in animals
inferred← citeshttps://doi.org/10.1038/s41586-026-10643-zopenalex-snapshot
A blastoporal organizer in a ctenophore
inferred← citeshttps://doi.org/10.1038/s41586-026-10748-5openalex-snapshot
A unicellular relative links aggregative multicellularity to animal origins
inferred← citeshttps://doi.org/10.1038/s41598-023-35979-8openalex-snapshot
The evolutionary history of Brachyury genes in Hydrozoa involves duplications, divergence, and neofunctionalization
inferred← citeshttps://doi.org/10.1038/srep22496openalex-snapshot
Bilaterian-like promoters in the highly compact Amphimedon queenslandica genome
inferred← citeshttps://doi.org/10.1093/gbe/evv141openalex-snapshot
KLF/SP Transcription Factor Family Evolution: Expansion, Diversification, and Innovation in Eukaryotes
inferred← citeshttps://doi.org/10.1093/gbe/evw118openalex-snapshot
The Unicellular Ancestry of Groucho-Mediated Repression and the Origins of Metazoan Transcription Factors
inferred← citeshttps://doi.org/10.1093/icb/icy036openalex-snapshot
What Makes an Animal? The Molecular Quest for the Origin of the Animal Kingdom
inferred← citeshttps://doi.org/10.1093/molbev/msv260openalex-snapshot
Evolution ofPrdmGenes in Animals: Insights from Comparative Genomics
inferred← citeshttps://doi.org/10.1098/rsob.200359openalex-snapshot
The origin of animals: an ancestral reconstruction of the unicellular-to-multicellular transition
inferred← citeshttps://doi.org/10.1101/2021.11.12.468452openalex-snapshot
Transcriptional regulation of neonatal neural stem cells is a determinant of social behavior
inferred← citeshttps://doi.org/10.1101/2023.01.09.523299openalex-snapshot
Evolutionary history of the Brachyury gene in Hydrozoa: duplications, divergence and neofunctionalization
inferred← citeshttps://doi.org/10.1101/2023.04.20.536761openalex-snapshot
Conserved enhancer logic controls the notochord expression of vertebrate Brachyury
inferred← citeshttps://doi.org/10.1101/2024.12.12.628285openalex-snapshot
Deep homology of a brachyury regulatory syntax and origin of the notochord
inferred← citeshttps://doi.org/10.1111/imm.12575openalex-snapshot
T‐bet as a key regulator of mucosal immunity
inferred← citeshttps://doi.org/10.1126/sciadv.adw3307openalex-snapshot
Deep homology of a brachyury cis-regulatory syntax and the evolutionary origin of the notochord
inferred← citeshttps://doi.org/10.1146/annurev-immunol-032414-112025openalex-snapshot
Transcription Factor Networks Directing the Development, Function, and Evolution of Innate Lymphoid Effectors
inferred← citeshttps://doi.org/10.1146/annurev-micro-032421-120023openalex-snapshot
The Origin of Metazoan Multicellularity: A Potential Microbial Black Swan Event
inferred← citeshttps://doi.org/10.1186/2041-9139-5-23openalex-snapshot
Evolution of the Pax-Six-Eya-Dach network: the calcisponge case study
inferred← citeshttps://doi.org/10.1186/s12864-015-1588-zopenalex-snapshot
Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica
inferred← citeshttps://doi.org/10.1186/s12915-020-0762-1openalex-snapshot
Insights into the origin of metazoan multicellularity from predatory unicellular relatives of animals
inferred← citeshttps://doi.org/10.1186/s12983-024-00521-7openalex-snapshot
New insights into mesoderm and endoderm development, and the nature of the onychophoran blastopore
inferred← citeshttps://doi.org/10.1186/s13227-016-0060-8openalex-snapshot
Conservation and divergence of bHLH genes in the calcisponge Sycon ciliatum
inferred← citeshttps://doi.org/10.1242/dev.104471openalex-snapshot
The T-box gene family: emerging roles in development, stem cells and cancer
inferred← citeshttps://doi.org/10.1242/dev.111880openalex-snapshot
EphA4-dependent Brachyury expression is required for dorsal mesoderm involution in the Xenopus gastrula
inferred← citeshttps://doi.org/10.1242/dev.145839openalex-snapshot
Cas9-mediated excision of Nematostella brachyury disrupts endoderm development, pharynx formation and oral-aboral patterning
inferred← citeshttps://doi.org/10.1242/dev.162107openalex-snapshot
Transfection of Capsaspora owczarzaki , a close unicellular relative of animals
inferred← citeshttps://doi.org/10.1242/dev.192575openalex-snapshot
Towards understanding the origin of animal development
inferred← citeshttps://doi.org/10.1242/dev.201016openalex-snapshot
Shared cis-regulatory modules control expression of the tandem paralogs midline and H15 in the follicular epithelium
inferred← citeshttps://doi.org/10.1534/g3.115.018101openalex-snapshot
Caenorhabditis elegansTBX-2 Directly Regulates Its Own Expression in a Negative Autoregulatory Loop
inferred← citeshttps://doi.org/10.17816/morph.698233openalex-snapshot
Notochord: morphogenesis, structure, and functional significance
inferred← citeshttps://doi.org/10.20944/preprints202402.1653.v1openalex-snapshot
The Evolutionary Foundations of Animal Transcriptional Regulatory Mechanisms
inferred← citeshttps://doi.org/10.31083/j.fbl2711317openalex-snapshot
Unde venisti PGRMC? Grand-Scale Biology from Early Eukaryotes and Eumetazoan Animal Origins
inferred← citeshttps://doi.org/10.3389/fbinf.2021.777299openalex-snapshot
Intracellular and Intercellular Gene Regulatory Network Inference From Time-Course Individual RNA-Seq
inferred← citeshttps://doi.org/10.3389/fcell.2020.590898openalex-snapshot
T-Box Transcription Factor 22 Is an Immune Microenvironment-Related Biomarker Associated With the BRAFV600E Mutation in Papillary Thyroid Carcinoma
inferred← citeshttps://doi.org/10.3389/fcell.2022.982477openalex-snapshot
Eomes function is conserved between zebrafish and mouse and controls left-right organiser progenitor gene expression via interlocking feedforward loops
inferred← citeshttps://doi.org/10.70675/3d74eba7z8f43z44c7zb7bbz37a96dd78d08openalex-snapshot
Comparaison des types cellulaires entre les stades de vie de l'hydrozoaire Clytiahemisphaerica
inferred← citeshttps://doi.org/10.7554/elife.06967openalex-snapshot
Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities
inferred← citeshttps://doi.org/10.7554/elife.34226openalex-snapshot
Gene family innovation, conservation and loss on the animal stem lineage
inferred← citeshttps://doi.org/10.7554/elife.45530openalex-snapshot
The genetic factors of bilaterian evolution
inferred← citeshttps://doi.org/10.7554/elife.69066openalex-snapshot
Studying evolution of the primary body axis in vivo and in vitro
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.