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Syntrophic exchange in synthetic microbial communities

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Engineering microbial consortia: a new frontier in synthetic biology

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Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen

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Metabolic modeling of a mutualistic microbial community

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Programming cells by multiplex genome engineering and accelerated evolution

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Synthetic cooperation in engineered yeast populations

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Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

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An efficient recombination system for chromosome engineering in Escherichia coli

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Engineered bacterial communication prevents Vibrio cholerae virulence in an infant mouse model

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Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass

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IMG: the integrated microbial genomes database and comparative analysis system

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The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

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Dynamics in the mixed microbial concourse

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NOVEL COOPERATION EXPERIMENTALLY EVOLVED BETWEEN SPECIES

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YddG from Escherichia coli promotes export of aromatic amino acids

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Predicting a Human Gut Microbiota’s Response to Diet in Gnotobiotic Mice

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Inducible l -Alanine Exporter Encoded by the Novel Gene ygaW ( alaE ) in Escherichia coli

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Shared Metabolic Pathways in a Coevolved Insect-Bacterial Symbiosis

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Effects of Deregulation of Methionine Biosynthesis on Methionine Excretion in Escherichia coli

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Export of l -Isoleucine from Corynebacterium glutamicum : a Two-Gene-Encoded Member of a New Translocator Family

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Evidence for an Arginine Exporter Encoded by yggA ( argO ) That Is Regulated by the LysR-Type Transcriptional Regulator ArgP in Escherichia coli

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Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters

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Emergence of Spatial Structure in Cell Groups and the Evolution of Cooperation

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Environments that Induce Synthetic Microbial Ecosystems

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Population Dynamics Constrain the Cooperative Evolution of Cross-Feeding

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Evolution of Cooperative Cross-Feeding Could Be Less Challenging Than Originally Thought

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A Programmable Escherichia coli Consortium via Tunable Symbiosis

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Metabolic Proximity in the Order of Colonization of a Microbial Community

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Sharing riboflavin as an electron shuttle enhances the corrosivity of a mixed consortium of Shewanella oneidensis and Bacillus licheniformis against 316L stainless steel

inferred← citeshttps://doi.org/10.1016/j.engmic.2024.100178openalex-snapshot

Exploring interspecific interaction variability in microbiota: A review

inferred← citeshttps://doi.org/10.1016/j.engmic.2025.100205openalex-snapshot

Advances in synthetic microbial ecosystems approach for studying ecological interactions and their influencing factors

inferred← citeshttps://doi.org/10.1016/j.envexpbot.2024.105939openalex-snapshot

Geographic bioprospection of maize rhizoplane-associated bacteria for consortia construction and impact on plant growth and nutrient uptake under low P availability

inferred← citeshttps://doi.org/10.1016/j.envint.2020.105650openalex-snapshot

Potential interactions between syntrophic bacteria and methanogens via type IV pili and quorum-sensing systems

inferred← citeshttps://doi.org/10.1016/j.envint.2021.106560openalex-snapshot

Bacteria-driven phthalic acid ester biodegradation: Current status and emerging opportunities

inferred← citeshttps://doi.org/10.1016/j.envint.2023.108124openalex-snapshot

Performance, microbial growth and community interactions of iron-dependent denitrification in freshwaters

inferred← citeshttps://doi.org/10.1016/j.envpol.2019.113580openalex-snapshot

Crop-dependent root-microbe-soil interactions induce contrasting natural attenuation of organochlorine lindane in soils

inferred← citeshttps://doi.org/10.1016/j.envpol.2020.113951openalex-snapshot

Dissolved organic matter does not promote glyphosate degradation in auto-heterotrophic aquatic microbial communities

inferred← citeshttps://doi.org/10.1016/j.envres.2022.113052openalex-snapshot

Cross-feeding among microalgae facilitates nitrogen recovery at low C/N

inferred← citeshttps://doi.org/10.1016/j.enzmictec.2018.03.008openalex-snapshot

Coculture induced improved production of biosurfactant by Staphylococcus lentus SZ2: Role in protecting Artemia salina against Vibrio harveyi

inferred← citeshttps://doi.org/10.1016/j.fbio.2025.106333openalex-snapshot

Time series comparative genomics analysis reveals the adaptive evolution of caproic acid-producing bacteria to the long-term liquor brewing environment

inferred← citeshttps://doi.org/10.1016/j.geoderma.2026.117945openalex-snapshot

Thiamine cross-feeding sustains diversity and promotes carbon mineralization during soil microbial community coalescence

inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.142021openalex-snapshot

The impact of ecological pressure caused by toxic lignin metabolites on microbial function transformation during composting

inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2025.111345openalex-snapshot

Synthetic microbial community mimicking kefir for investigating community dynamics and interspecies interactions

inferred← citeshttps://doi.org/10.1016/j.isci.2020.100879openalex-snapshot

Advanced Strategies for Production of Natural Products in Yeast

inferred← citeshttps://doi.org/10.1016/j.isci.2022.103775openalex-snapshot

Conceptual strategies for characterizing interactions in microbial communities

inferred← citeshttps://doi.org/10.1016/j.isci.2026.114912openalex-snapshot

Limits to the evolution of metabolic dependency in spatially structured microbial communities

inferred← citeshttps://doi.org/10.1016/j.jbiosc.2020.09.009openalex-snapshot

Coexisting mechanisms of bacterial community are changeable even under similar stable conditions in a chemostat culture

inferred← citeshttps://doi.org/10.1016/j.jece.2023.111859openalex-snapshot

Metabolic characteristics and the cross-feeding of Bacillus and Ca. Brocadia in an integrated partial denitrification-anammox reactor driven by glycerol

inferred← citeshttps://doi.org/10.1016/j.jece.2024.112070openalex-snapshot

Metabolic interactions in chain elongation system with granular activated carbon for medium-chain carboxylates production

inferred← citeshttps://doi.org/10.1016/j.jece.2025.117708openalex-snapshot

Coregulation strategies of the thiosulfate-based denitrifying consortium acclimating to low temperature

inferred← citeshttps://doi.org/10.1016/j.jece.2026.124654openalex-snapshot

Adaptive mechanisms and metabolic evolution of photogranules based on anammox under light irradiation

inferred← citeshttps://doi.org/10.1016/j.jenvman.2024.122789openalex-snapshot

Bacterial consortium amendment effectively reduces Pb/Cd bioavailability in soil and their accumulation in wheat

inferred← citeshttps://doi.org/10.1016/j.jenvman.2025.124270openalex-snapshot

Metagenomic insight into the diffusion signal factor mediated social traits of anammox consortia after starvation

inferred← citeshttps://doi.org/10.1016/j.jes.2025.09.016openalex-snapshot

Microbial consortium accelerates di(2-ethylhexyl) phthalate degradation through amino acid exchange-mediated inter-strain synergism

inferred← citeshttps://doi.org/10.1016/j.jhazmat.2018.12.071openalex-snapshot

Co-occurrence patterns of the microbial community in polycyclic aromatic hydrocarbon-contaminated riverine sediments

inferred← citeshttps://doi.org/10.1016/j.jhazmat.2020.124385openalex-snapshot

Synergistic interactions of Desulfovibrio and Petrimonas for sulfate-reduction coupling polycyclic aromatic hydrocarbon degradation

inferred← citeshttps://doi.org/10.1016/j.jhazmat.2025.140221openalex-snapshot

Partitioning dynamics of polycyclic aromatic hydrocarbons and their derivatives in water-sediment systems: Implications for microbial community perturbations and enhanced anthropogenic pathogenicity in riverine ecosystems

inferred← citeshttps://doi.org/10.1016/j.jhazmat.2026.142120openalex-snapshot

Molecular mechanisms underlying synergistic polylactic acid degradation in a bacterial co-culture

inferred← citeshttps://doi.org/10.1016/j.jmb.2015.10.019openalex-snapshot

Synthetic Ecology of Microbes: Mathematical Models and Applications

inferred← citeshttps://doi.org/10.1016/j.jmb.2015.10.025openalex-snapshot

Towards Engineering Biological Systems in a Broader Context

inferred← citeshttps://doi.org/10.1016/j.jmb.2016.02.018openalex-snapshot

Foundations and Emerging Paradigms for Computing in Living Cells

inferred← citeshttps://doi.org/10.1016/j.jtbi.2017.02.031openalex-snapshot

Symbiosis in eukaryotic evolution

inferred← citeshttps://doi.org/10.1016/j.jtbi.2018.02.031openalex-snapshot

How spatial structure and neighbor uncertainty promote mutualists and weaken black queen effects

inferred← citeshttps://doi.org/10.1016/j.jtbi.2018.06.013openalex-snapshot

How leaking and overproducing resources affect the evolutionary robustness of cooperative cross-feeding

inferred← citeshttps://doi.org/10.1016/j.jtbi.2019.01.009openalex-snapshot

Microbial cross-feeding promotes multiple stable states and species coexistence, but also susceptibility to cheaters

inferred← citeshttps://doi.org/10.1016/j.jtbi.2019.01.030openalex-snapshot

Role of resource allocation and transport in emergence of cross-feeding in microbial consortia

inferred← citeshttps://doi.org/10.1016/j.jwpe.2020.101493openalex-snapshot

Autotrophic nitrogen removal and potential microbial interactions in anammox systems with different ammonia and organic carbon concentrations

inferred← citeshttps://doi.org/10.1016/j.jwpe.2020.101694openalex-snapshot

Start-up of anammox systems with different feeding patterns: System performance, microbial community and potential microbial interactions

inferred← citeshttps://doi.org/10.1016/j.mec.2020.e00133openalex-snapshot

Enhancement of amino acid production and secretion by Lactococcus lactis using a droplet-based biosensing and selection system

inferred← citeshttps://doi.org/10.1016/j.mib.2015.06.014openalex-snapshot

Metabolic interactions in microbial communities: untangling the Gordian knot

inferred← citeshttps://doi.org/10.1016/j.mib.2016.03.010openalex-snapshot

Principles for designing synthetic microbial communities

inferred← citeshttps://doi.org/10.1016/j.mib.2016.03.015openalex-snapshot

Microbial interactions and community assembly at microscales

inferred← citeshttps://doi.org/10.1016/j.mib.2016.04.014openalex-snapshot

The information science of microbial ecology

inferred← citeshttps://doi.org/10.1016/j.mib.2018.02.009openalex-snapshot

Rational engineering of synthetic microbial systems: from single cells to consortia

inferred← citeshttps://doi.org/10.1016/j.mib.2023.102394openalex-snapshot

Evolution and synthetic biology

inferred← citeshttps://doi.org/10.1016/j.mib.2025.102652openalex-snapshot

Engineering natural microbial communities: harnessing synthetic communities for bioremediation

inferred← citeshttps://doi.org/10.1016/j.mib.2026.102790openalex-snapshot

A conceptual framework to dissect emergent functions in microbial communities

inferred← citeshttps://doi.org/10.1016/j.micres.2022.127180openalex-snapshot

Current understanding of plant-microbe interaction through the lenses of multi-omics approaches and their benefits in sustainable agriculture

inferred← citeshttps://doi.org/10.1016/j.micres.2024.127793openalex-snapshot

Ancient and remote quartzite caves as a novel source of culturable microbes with biotechnological potential

inferred← citeshttps://doi.org/10.1016/j.micres.2025.128054openalex-snapshot

Microbial diversity and interactions: Synergistic effects and potential applications of Pseudomonas and Bacillus consortia

inferred← citeshttps://doi.org/10.1016/j.microc.2024.111623openalex-snapshot

Insights into the efficient electricity production performance using acid-treated straw in MFCs

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.141513openalex-snapshot

Elevated nitrate simplifies microbial community compositions and interactions in sulfide-rich river sediments

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.167832openalex-snapshot

Metagenomic insights into the microbial cooperative networks of a benz(a)anthracene-7,12-dione degrading community from a creosote-contaminated soil

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.176239openalex-snapshot

Bacterial communication intelligently regulates their interactions in anammox consortia under decreasing temperatures

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.177395openalex-snapshot

Arginine enhances activity of anammox consortia and process stability with increased nitrogen loading

inferred← citeshttps://doi.org/10.1016/j.synbio.2016.02.001openalex-snapshot

Design, analysis and application of synthetic microbial consortia

inferred← citeshttps://doi.org/10.1016/j.synbio.2016.08.004openalex-snapshot

Design and construction of synthetic microbial consortia in China

inferred← citeshttps://doi.org/10.1016/j.synbio.2023.03.005openalex-snapshot

Degradation strategies of pesticide residue: From chemicals to synthetic biology

inferred← citeshttps://doi.org/10.1016/j.synbio.2024.06.006openalex-snapshot

A systematic discussion and comparison of the construction methods of synthetic microbial community

inferred← citeshttps://doi.org/10.1016/j.synbio.2026.05.008openalex-snapshot

Engineering an asymmetric cross-feeding consortium in Ogataea polymorpha driven by sulfur metabolism

inferred← citeshttps://doi.org/10.1016/j.tibtech.2018.11.002openalex-snapshot

Synthetic Biology Tools to Engineer Microbial Communities for Biotechnology

inferred← citeshttps://doi.org/10.1016/j.tibtech.2023.05.008openalex-snapshot

Construction of stable microbial consortia for effective biochemical synthesis

inferred← citeshttps://doi.org/10.1016/j.tibtech.2025.04.003openalex-snapshot

Molecular process control for industrial biotechnology

inferred← citeshttps://doi.org/10.1016/j.tifs.2024.104780openalex-snapshot

The atlas of dark tea: Mapping complexities of their microbiome

inferred← citeshttps://doi.org/10.1016/j.tim.2017.02.015openalex-snapshot

Bacterial Unculturability and the Formation of Intercellular Metabolic Networks

inferred← citeshttps://doi.org/10.1016/j.tim.2024.11.009openalex-snapshot

The exometabolome as a hidden driver of bacterial virulence and pathogenesis

inferred← citeshttps://doi.org/10.1016/j.tim.2025.01.013openalex-snapshot

Disentangling microbial interaction networks

inferred← citeshttps://doi.org/10.1016/j.tim.2025.07.009openalex-snapshot

An updated view of metabolic handoffs in microbiomes

inferred← citeshttps://doi.org/10.1016/j.tplants.2021.05.006openalex-snapshot

Bacterial volatile compound-based tools for crop management and quality

inferred← citeshttps://doi.org/10.1016/j.tree.2024.07.009openalex-snapshot

On the hunt for facilitation in symbiont communities

inferred← citeshttps://doi.org/10.1016/j.watres.2019.114974openalex-snapshot

Discrepant gene functional potential and cross-feedings of anammox bacteria Ca. Jettenia caeni and Ca. Brocadia sinica in response to acetate

inferred← citeshttps://doi.org/10.1016/j.watres.2020.116802openalex-snapshot

Deciphering bacterial social traits via diffusible signal factor (DSF) -mediated public goods in an anammox community

inferred← citeshttps://doi.org/10.1016/j.watres.2023.120144openalex-snapshot

Anammox bacteria adapt to long-term light irradiation in photogranules

inferred← citeshttps://doi.org/10.1016/j.watres.2024.122580openalex-snapshot

Differentiation of the Anammox core microbiome: Unraveling the evolutionary impetus of scalable gene flow

inferred← citeshttps://doi.org/10.1016/j.watres.2025.123472openalex-snapshot

Impaired denitrification of aerobic granules in response to micro/nanoplastic stress: Insights from interspecies interactions and electron transfer processes

inferred← citeshttps://doi.org/10.1016/j.watres.2026.125694openalex-snapshot

Light-driven community assembly and functional performance of aeration-free filamentous algae–partial nitrification/anammox granule

inferred← citeshttps://doi.org/10.1016/j.xplc.2024.100812openalex-snapshot

Rational management of the plant microbiome for the Second Green Revolution

inferred← citeshttps://doi.org/10.1016/j.ymben.2016.05.007openalex-snapshot

Modular co-culture engineering, a new approach for metabolic engineering

inferred← citeshttps://doi.org/10.1016/j.ymben.2016.10.013openalex-snapshot

Enhanced solvent production by metabolic engineering of a twin-clostridial consortium

inferred← citeshttps://doi.org/10.1016/j.ymben.2018.03.016openalex-snapshot

Convergent engineering of syntrophic Escherichia coli coculture for efficient production of glycosides

inferred← citeshttps://doi.org/10.1016/j.ymben.2019.04.007openalex-snapshot

Syntrophic co-culture amplification of production phenotype for high-throughput screening of microbial strain libraries

inferred← citeshttps://doi.org/10.1016/j.ymben.2025.01.003openalex-snapshot

Cross-feeding of amino acid pathway intermediates is common in co-cultures of auxotrophic Escherichia coli

inferred← citeshttps://doi.org/10.1016/j.ymben.2026.102544openalex-snapshot

13C-metabolic flux analysis uncovers rewiring in Escherichia coli ΔmetA metabolism and secretion of amino acids in response to methionine limitation

inferred← citeshttps://doi.org/10.1016/s1002-0160(18)60061-xopenalex-snapshot

Soil Microbiomes—a Promising Strategy for Contaminated Soil Remediation: A Review

inferred← citeshttps://doi.org/10.1017/s002966512510061xopenalex-snapshot

The interconnection between dietary fibre, gut microbiome and psychological well-being

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