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Mpi recombinase globally modulates the surface architecture of a human commensal bacterium
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/j.1460-2075.1982.tb01336.xopenalex-snapshot
A site‐specific, conservative recombination system carried by bacteriophage P1. Mapping the recombinase gene cin and the cross‐over sites cix for the inversion of the C segment.
inferredcites →https://doi.org/10.1002/j.1460-2075.1985.tb02317.xopenalex-snapshot
Protein‐chemical characterization of NF‐H, the largest mammalian neurofilament component; intermediate filament‐type sequences followed by a unique carboxy‐terminal extension
inferredcites →https://doi.org/10.1002/j.1460-2075.1986.tb04372.xopenalex-snapshot
Two regulatory fim genes, fimB and fimE, control the phase variation of type 1 fimbriae in Escherichia coli.
inferredcites →https://doi.org/10.1016/0042-6822(81)90280-4openalex-snapshot
Identification of the gin protein of bacteriophage Mu
inferredcites →https://doi.org/10.1016/0147-619x(92)90014-2openalex-snapshot
Heterologous gene expression in Bacteroides fragilis
inferredcites →https://doi.org/10.1016/0378-1119(92)90506-kopenalex-snapshot
Plasmids with easily excisable xylE cassettes
inferredcites →https://doi.org/10.1016/s0168-9525(00)02024-2openalex-snapshot
EMBOSS: The European Molecular Biology Open Software Suite
inferredcites →https://doi.org/10.1016/s0378-1097(00)00472-9openalex-snapshot
Analysis of cepA and other Bacteroides fragilis genes reveals a unique promoter structure
inferredcites →https://doi.org/10.1038/35107092openalex-snapshot
Extensive surface diversity of a commensal microorganism by multiple DNA inversions
inferredcites →https://doi.org/10.1046/j.1365-2958.2002.02891.xopenalex-snapshot
Diversity in the serine recombinases
inferredcites →https://doi.org/10.1046/j.1365-2958.2002.03067.xopenalex-snapshot
Identification of MrpI as the sole recombinase that regulates the phase variation of MR/P fimbria, a bladder colonization factor of uropathogenic Proteus mirabilis
inferredcites →https://doi.org/10.1046/j.1365-2958.2003.03419.xopenalex-snapshot
Phase variation of the 987P‐like CS18 fimbriae of human enterotoxigenic Escherichia coli is regulated by site‐specific recombinases
inferredcites →https://doi.org/10.1073/pnas.80.4.1101openalex-snapshot
Chromogenic identification of genetic regulatory signals in Bacillus subtilis based on expression of a cloned Pseudomonas gene.
inferredcites →https://doi.org/10.1093/emboj/19.1.57openalex-snapshot
Translocation of group 1 capsular polysaccharide to the surface of Escherichia coli requires a multimeric complex in the outer membrane
inferredcites →https://doi.org/10.1093/infdis/136.1.82openalex-snapshot
The Capsular Polysaccharide of Bacteroides fragilis as a Virulence Factor: Comparison of the Pathogenic Potential of Encapsulated and Unencapsulated Strains
inferredcites →https://doi.org/10.1093/nar/30.1.276openalex-snapshot
The Pfam Protein Families Database
inferredcites →https://doi.org/10.1099/mic.0.26166-0openalex-snapshot
Multiple inverted DNA repeats of Bacteroides fragilis that control polysaccharide antigenic variation are similar to the hin region inverted repeats of Salmonella typhimurium
inferredcites →https://doi.org/10.1101/gad.8.1.74openalex-snapshot
Anabaena xisF gene encodes a developmentally regulated site-specific recombinase.
inferredcites →https://doi.org/10.1111/j.1365-2958.1990.tb00671.xopenalex-snapshot
The Min DNA inversion enzyme of plasmid p15B of Escherichia coli 15T−: a new member of the Din family of site‐specific recombinases
inferredcites →https://doi.org/10.1126/science.1080029openalex-snapshot
A Genomic View of the Human- Bacteroides thetaiotaomicron Symbiosis
inferredcites →https://doi.org/10.1126/science.273.5280.1380openalex-snapshot
A Model of Host-Microbial Interactions in an Open Mammalian Ecosystem
inferredcites →https://doi.org/10.1128/.68.11.6176-6181.2000openalex-snapshot
Bacteroides fragilis NCTC9343 Produces at Least Three Distinct Capsular Polysaccharides: Cloning, Characterization, and Reassignment of Polysaccharide B and C Biosynthesis Loci
inferredcites →https://doi.org/10.1128/.68.11.6182-6188.2000openalex-snapshot
Genetic Diversity of the Capsular Polysaccharide C Biosynthesis Region of Bacteroides fragilis
inferredcites →https://doi.org/10.1128/iai.66.7.3303-3310.1998openalex-snapshot
In Vivo Phase Variation of Escherichia coli Type 1 Fimbrial Genes in Women with Urinary Tract Infection
inferredcites →https://doi.org/10.1128/iai.69.7.4342-4350.2001openalex-snapshot
Polysaccharide Biosynthesis Locus Required for Virulence ofBacteroides fragilis
inferredcites →https://doi.org/10.1128/jb.171.6.3199-3204.1989openalex-snapshot
Genetic evidence that outer membrane binding of starch is required for starch utilization by Bacteroides thetaiotaomicron
inferredcites →https://doi.org/10.1128/jb.172.5.2584-2593.1990openalex-snapshot
Sequencing the gene for an imipenem-cefoxitin-hydrolyzing enzyme (CfiA) from Bacteroides fragilis TAL2480 reveals strong similarity between CfiA and Bacillus cereus beta-lactamase II
inferredcites →https://doi.org/10.1128/jb.174.1.342-344.1992openalex-snapshot
Evidence for differential regulation of genes in the chondroitin sulfate utilization pathway of Bacteroides thetaiotaomicron
inferredcites →https://doi.org/10.1128/jb.178.11.3374-3376.1996openalex-snapshot
The sre gene (ORF469) encodes a site-specific recombinase responsible for integration of the R4 phage genome
inferredcites →https://doi.org/10.1128/jb.178.3.823-830.1996openalex-snapshot
A Bacteroides thetaiotaomicron outer membrane protein that is essential for utilization of maltooligosaccharides and starch
inferredcites →https://doi.org/10.1128/jb.182.23.6577-6583.2000openalex-snapshot
The Large Resolvase TndX Is Required and Sufficient for Integration and Excision of Derivatives of the Novel Conjugative Transposon Tn 5397
inferredcites →https://doi.org/10.1128/jb.184.21.5926-5934.2002openalex-snapshot
DNA Inversion on Conjugative Plasmid pVT745
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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A Subset of Polysaccharide Capsules in the Human Symbiont Bacteroides thetaiotaomicron Promote Increased Competitive Fitness in the Mouse Gut
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In vivo imaging and tracking of host–microbiota interactions via metabolic labeling of gut anaerobic bacteria
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Reconstructing immune phylogeny: new perspectives
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Protein glycosylation in bacteria: sweeter than ever
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Harnessing gut microbes for glycan detection and quantification
inferred← citeshttps://doi.org/10.1038/s41467-024-50957-yopenalex-snapshot
Structure, biosynthesis and regulation of the T1 antigen, a phase-variable surface polysaccharide conserved in many Salmonella serovars
inferred← citeshttps://doi.org/10.1038/s41467-024-55215-9openalex-snapshot
Bacteroides expand the functional versatility of a conserved transcription factor and transcribed DNA to program capsule diversity
inferred← citeshttps://doi.org/10.1038/s41467-026-70381-8openalex-snapshot
Dynamics of phage-host interactions in Bacteroides fragilis resolved by single-cell transcriptomics
inferred← citeshttps://doi.org/10.1038/s41598-018-31181-3openalex-snapshot
Characterization and induction of prophages in human gut-associated Bifidobacterium hosts
inferred← citeshttps://doi.org/10.1038/srep38914openalex-snapshot
Evidence for a LOS and a capsular polysaccharide in Capnocytophaga canimorsus
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Engineering immunomodulatory nanoplatforms from commensal bacteria-derived polysaccharide A
inferred← citeshttps://doi.org/10.1073/pnas.0404172101openalex-snapshot
Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation
inferred← citeshttps://doi.org/10.1073/pnas.0608797104openalex-snapshot
Phase-variable expression of a family of glycoproteins imparts a dynamic surface to a symbiont in its human intestinal ecosystem
inferred← citeshttps://doi.org/10.1073/pnas.0709266105openalex-snapshot
Regulation of surface architecture by symbiotic bacteria mediates host colonization
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Role of glycan synthesis in colonization of the mammalian gut by the bacterial symbiont Bacteroides fragilis
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Trans locus inhibitors limit concomitant polysaccharide synthesis in the human gut symbiont Bacteroides fragilis
inferred← citeshttps://doi.org/10.1073/pnas.1115621109openalex-snapshot
Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection
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Functional genomics of Lactobacillus casei establishment in the gut
inferred← citeshttps://doi.org/10.1073/pnas.1813780115openalex-snapshot
Dietary sugar silences a colonization factor in a mammalian gut symbiont
inferred← citeshttps://doi.org/10.1074/mcp.m112.021519openalex-snapshot
Diversity in the Protein N-Glycosylation Pathways Within the Campylobacter Genus
inferred← citeshttps://doi.org/10.1080/19490976.2018.1560755openalex-snapshot
Promoter orientation of the immunomodulatory Bacteroides fragilis capsular polysaccharide A (PSA) is off in individuals with inflammatory bowel disease (IBD)
inferred← citeshttps://doi.org/10.1080/19490976.2022.2038854openalex-snapshot
Flagellum and toxin phase variation impacts intestinal colonization and disease development in a mouse model of Clostridioides difficile infection
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Bacteriophage-driven DNA inversions shape bacterial functionality and long-term co-existence in Bacteroides fragilis
inferred← citeshttps://doi.org/10.1080/19490976.2025.2507775openalex-snapshot
Adaptations in gut Bacteroidales facilitate stable co-existence with their lytic bacteriophages
inferred← citeshttps://doi.org/10.1080/19490976.2026.2687913openalex-snapshot
Phase variation-mediated bacterial functional plasticity as a lens for understanding microbe‒host interactions
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207466.001.0001openalex-snapshot
Evolution in Health and Disease
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207466.002.0003openalex-snapshot
Copyright Page
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207466.002.0004openalex-snapshot
Preface to the Second Edition
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207466.002.0006openalex-snapshot
Contributors
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207466.003.0001openalex-snapshot
Introducing Evolutionary Thinking For Medicine
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207466.003.0002openalex-snapshot
Global spatial patterns of infectious diseases and human evolution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207466.003.0003openalex-snapshot
Medically relevant variation in the human genome
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207466.003.0004openalex-snapshot
Health consequences of ecogenetic variation
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Human genetic variation of medical significance
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Intimate relations: Evolutionary conflicts of pregnancy and childhood
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How hormones mediate trade-offs in human health and disease
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Functional significance of MHC variation in mate choice, reproductive outcome, and disease risk
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Perspectives on human health and disease from evolutionary and behavioral ecology
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The ecology and evolution of antibiotic-resistant bacteria
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Pathogen evolution in a vaccinated world
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The evolution and expression of virulence
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Evolutionary origins of diversity in human viruses
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The population structure of pathogenic bacteria
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Whole-genome analysis of pathogen evolution
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Emergence of new infectious diseases
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Evolution of parasites
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Evolutionary biology as a foundation for studying aging and aging-related disease
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Evolution, developmental plasticity, and metabolic disease
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Lifestyle, diet, and disease: comparative perspectives on the determinants of chronic health risks
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Cancer: evolutionary origins of vulnerability
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Cancer as a microevolutionary process
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The evolutionary context of human aging and degenerative disease
inferred← citeshttps://doi.org/10.1093/genetics/iyag248openalex-snapshot
Beyond clonality: invertons as engines of phenotypic heterogeneity in bacteria
inferred← citeshttps://doi.org/10.1093/nar/gkaa824openalex-snapshot
Analysis of a phase-variable restriction modification system of the human gut symbiont Bacteroides fragilis
inferred← citeshttps://doi.org/10.1093/nar/gkae966openalex-snapshot
Deep learning revealed the distribution and evolution patterns for invertible promoters across bacterial lineages
inferred← citeshttps://doi.org/10.1099/mic.0.000057openalex-snapshot
PinR mediates the generation of reversible population diversity in Streptococcus zooepidemicus
inferred← citeshttps://doi.org/10.1099/mic.0.001066openalex-snapshot
Phase-variable bacteria simultaneously express multiple capsules
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100+ years of phase variation: the premier bacterial bet-hedging phenomenon
inferred← citeshttps://doi.org/10.1099/mic.0.025361-0openalex-snapshot
Mutational analysis of genes implicated in LPS and capsular polysaccharide biosynthesis in the opportunistic pathogen Bacteroides fragilis
inferred← citeshttps://doi.org/10.1099/mic.0.2008/019109-0openalex-snapshot
Identification and use of the putative Bacteroides ovatus xylanase promoter for the inducible production of recombinant human proteins
inferred← citeshttps://doi.org/10.1101/2020.08.19.258442openalex-snapshot
Hemagglutination by B. fragilis is mediated by capsular polysaccharides and is influenced by host ABO blood type
inferred← citeshttps://doi.org/10.1101/2022.10.31.514637openalex-snapshot
High-throughput single-cell sequencing of multiple invertible promoters reveals a strong determinant of bacterial population heterogeneity
inferred← citeshttps://doi.org/10.1101/2022.11.21.517444openalex-snapshot
Massively parallel single-cell sequencing of genetic loci in diverse microbial populations
inferred← citeshttps://doi.org/10.1101/2023.10.25.564076openalex-snapshot
Deep Learning enables reliable and comprehensive profiling of invertible promoters in microbes
inferred← citeshttps://doi.org/10.1101/2024.06.21.599965openalex-snapshot
Bacteroides expand the functional versatility of a universal transcription factor and transcribed DNA to program capsule diversity
inferred← citeshttps://doi.org/10.1101/2025.01.13.632860openalex-snapshot
Combinatorial phenotypic landscape enables bacterial resistance to phage infection
inferred← citeshttps://doi.org/10.1101/2025.06.24.661302openalex-snapshot
Rapid genetic diversification of Bacteroides thetaiotaomicron in mono-associated mice revealed through deep population-level sequencing
inferred← citeshttps://doi.org/10.1111/evj.12658openalex-snapshot
Science‐in‐brief: Streptococcus zooepidemicus : a versatile opportunistic pathogen that hedges its bets in horses
inferred← citeshttps://doi.org/10.1111/j.1365-2958.2004.04219.xopenalex-snapshot
Tyrosine site‐specific recombinases mediate DNA inversions affecting the expression of outer surface proteins of Bacteroides fragilis
inferred← citeshttps://doi.org/10.1111/j.1365-2958.2007.06103.xopenalex-snapshot
Phase‐locked mutants of Mycoplasma agalactiae: defining the molecular switch of high‐frequency Vpma antigenic variation
inferred← citeshttps://doi.org/10.1111/j.1574-6976.2009.00162.xopenalex-snapshot
Determinants of phase variation rate and the fitness implications of differing rates for bacterial pathogens and commensals
inferred← citeshttps://doi.org/10.1111/nyas.13660openalex-snapshot
Finding a needle in a haystack: Bacteroides fragilis polysaccharide A as the archetypical symbiosis factor
inferred← citeshttps://doi.org/10.1126/sciadv.adg5476openalex-snapshot
Single-cell analysis of multiple invertible promoters reveals differential inversion rates as a strong determinant of bacterial population heterogeneity
inferred← citeshttps://doi.org/10.1126/science.1106469openalex-snapshot
Human Symbionts Use a Host-Like Pathway for Surface Fucosylation
inferred← citeshttps://doi.org/10.1126/science.1107008openalex-snapshot
Extensive DNA Inversions in the B. fragilis Genome Control Variable Gene Expression
inferred← citeshttps://doi.org/10.1126/science.aau5238openalex-snapshot
Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut
inferred← citeshttps://doi.org/10.1128/9781555819217.ch9openalex-snapshot
Site-specific DNA Inversion by Serine Recombinases
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Molecular Switch Controlling Expression of the Mannose-Specific Adhesin, Msa, in Lactobacillus plantarum
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Bacteroides : the Good, the Bad, and the Nitty-Gritty
inferred← citeshttps://doi.org/10.1128/cmr.00053-08openalex-snapshot
Enterotoxigenic Bacteroides fragilis : a Rogue among Symbiotes
inferred← citeshttps://doi.org/10.1128/iai.00814-08openalex-snapshot
Induction of Persistent Colitis by a Human Commensal, EnterotoxigenicBacteroides fragilis, in Wild-Type C57BL/6 Mice
inferred← citeshttps://doi.org/10.1128/jb.00346-25openalex-snapshot
Lessons from the model gut Bacteroidales Bacteroides fragilis and Bacteroides thetaiotaomicron and future opportunities
inferred← citeshttps://doi.org/10.1128/jb.00500-09openalex-snapshot
A Family of Transcriptional Antitermination Factors Necessary for Synthesis of the Capsular Polysaccharides of Bacteroides fragilis
inferred← citeshttps://doi.org/10.1128/jb.00555-10openalex-snapshot
Orientations of the Bacteroides fragilis Capsular Polysaccharide Biosynthesis Locus Promoters during Symbiosis and Infection
inferred← citeshttps://doi.org/10.1128/jb.00687-09openalex-snapshot
Identification of the Site-Specific DNA Invertase Responsible for the Phase Variation of SusC/SusD Family Outer Membrane Proteins in Bacteroides fragilis
inferred← citeshttps://doi.org/10.1128/jb.01362-06openalex-snapshot
Bacteroides fragilis Synthesizes a DNA Invertase Affecting both a Local and a Distant Region
inferred← citeshttps://doi.org/10.1128/jb.01491-12openalex-snapshot
The Extracytoplasmic Function Sigma Factor EcfO Protects Bacteroides fragilis against Oxidative Stress
inferred← citeshttps://doi.org/10.1128/jb.01519-07openalex-snapshot
Expression of a Uniquely Regulated Extracellular Polysaccharide Confers a Large-Capsule Phenotype to Bacteroides fragilis
inferred← citeshttps://doi.org/10.1128/jb.01559-07openalex-snapshot
Niche-Specific Features of the Intestinal Bacteroidales
inferred← citeshttps://doi.org/10.1128/jb.188.5.1987-1998.2006openalex-snapshot
Genetic Variation in the Vibrio vulnificus Group 1 Capsular Polysaccharide Operon
inferred← citeshttps://doi.org/10.1128/mbio.01339-15openalex-snapshot
A Phase-Variable Surface Layer from the Gut Symbiont Bacteroides thetaiotaomicron
inferred← citeshttps://doi.org/10.1128/mbio.01360-18openalex-snapshot
Identification and Characterization of a Phase-Variable Element That Regulates the Autotransporter UpaE in Uropathogenic Escherichia coli
inferred← citeshttps://doi.org/10.1128/microbiolspec.mdna3-0047-2014openalex-snapshot
Site-specific DNA Inversion by Serine Recombinases
inferred← citeshttps://doi.org/10.1128/mmbr.00024-08openalex-snapshot
Pivotal Roles of the Outer Membrane Polysaccharide Export and Polysaccharide Copolymerase Protein Families in Export of Extracellular Polysaccharides in Gram-Negative Bacteria
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Gene regulation in Bacteroides fragilis : adaptive control in a dynamic host environment
inferred← citeshttps://doi.org/10.1146/annurev-micro-102215-095316openalex-snapshot
The Critical Roles of Polysaccharides in Gut Microbial Ecology and Physiology
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Diversity, ecology and intestinal function of bifidobacteria
inferred← citeshttps://doi.org/10.1186/s12915-021-01084-3openalex-snapshot
Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis
inferred← citeshttps://doi.org/10.1186/s40168-025-02052-7openalex-snapshot
Comprehensive profiling of genomic invertons in defined gut microbial community reveals associations with intestinal colonization and surface adhesion
inferred← citeshttps://doi.org/10.12677/acm.2023.133616openalex-snapshot
Research Progress in Bacteroides Resistance to Carbapenems and Their Resistance Mechanism
inferred← citeshttps://doi.org/10.1371/journal.pbio.0050156openalex-snapshot
Evolution of Symbiotic Bacteria in the Distal Human Intestine
inferred← citeshttps://doi.org/10.1371/journal.pgen.1006701openalex-snapshot
A genetic switch controls the production of flagella and toxins in Clostridium difficile
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007332openalex-snapshot
Genome-wide detection of conservative site-specific recombination in bacteria
inferred← citeshttps://doi.org/10.1371/journal.pone.0148887openalex-snapshot
DNA Inversion Regulates Outer Membrane Vesicle Production in Bacteroides fragilis
inferred← citeshttps://doi.org/10.1371/journal.ppat.1006525openalex-snapshot
Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens
inferred← citeshttps://doi.org/10.1371/journal.ppat.1008439openalex-snapshot
Enhancing bacterial survival through phenotypic heterogeneity
inferred← citeshttps://doi.org/10.1515/hsz-2020-0230openalex-snapshot
An RNA-centric view on gut Bacteroidetes
inferred← citeshttps://doi.org/10.18174/389544openalex-snapshot
Characterisation of Lactobacillus plantarum single and multi-strain biofilms
inferred← citeshttps://doi.org/10.2741/3603openalex-snapshot
Beneficial effects of Bacteroides fragilis polysaccharides on the immune system
inferred← citeshttps://doi.org/10.3389/fimmu.2025.1599480openalex-snapshot
Gut commensal bacteria-derived polysaccharide sub-micron particles induce antigen-specific, tolerogenic responses
inferred← citeshttps://doi.org/10.3390/microorganisms9081602openalex-snapshot
Surface Properties of Parabacteroides distasonis and Impacts of Stress-Induced Molecules on Its Surface Adhesion and Biofilm Formation Capacities
inferred← citeshttps://doi.org/10.3410/f.1119559.575769openalex-snapshot
Faculty Opinions recommendation of Role of glycan synthesis in colonization of the mammalian gut by the bacterial symbiont Bacteroides fragilis.
inferred← citeshttps://doi.org/10.6084/m9.figshare.15253497openalex-snapshot
Additional file 1 of Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis
inferred← citeshttps://doi.org/10.64898/2026.08.07.743496openalex-snapshot
Mathematical Modelling of Bacterial DNA Inversion Dynamics Uncovers an Organized Multi-Locus Response to Phage Predation in Bacteroides fragilis
inferred← citeshttps://doi.org/10.70675/2219a318z5d00z4fa5zade7z2e6ecc40516copenalex-snapshot
Rôle de la RNase III dans l'adaptation d'Escherichia coli à son environnement
inferred← citeshttps://doi.org/10.70675/c303a161z5e08z4284za4baz590c01ce4043openalex-snapshot
Analyse fonctionnelle de bactéries du microbiote intestinal humain et évaluation de leurs propriétés bénéfiques contre l’obésité et l’inflammation intestinale
inferred← citeshttps://doi.org/10.70675/ccb19c47zb427z4507zbbfazd7fd1e12c71dopenalex-snapshot
Formation and functions of biofilms in the gut anaerobe Bacteroides thetaiotaomicron
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