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Discovery of a small protein factor involved in the coordinated degradation of phycobilisomes in cyanobacteria

https://doi.org/10.1073/pnas.2012277118
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Outgoing claims: the papers this work cites, builds on, or argues with.

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The Identification of Bacterial Non‐coding RNAs through Complementary Approaches
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A small polypeptide triggers complete degradation of light‐harvesting phycobiliproteins in nutrient‐deprived cyanobacteria.
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Cyanobacterial Phycobilisomes
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Nitrogen limitation on land and in the sea: How can it occur?
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C-phycocyanin as a storage protein in the blue-green alga Spirulina platensis
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Nitrogen chlorosis in blue-green algae
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Characterization of Synechocystis sp. strain PCC 6803 and Δ nbl mutants under nitrogen-deficient conditions
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NblA Gene Expression in Synechocystis PCC 6803 Strains Lacking DspA (Hik33) and a NblR-like Protein
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Association of small CAB-like proteins (SCPs) of Synechocystis sp. PCC 6803 with Photosystem II
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The proteolysis adaptor, NblA, binds to the N-terminus of β-phycocyanin: Implications for the mechanism of phycobilisome degradation
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[32] Phycobilisomes
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Structural organisation of phycobilisomes from Synechocystis sp. strain PCC6803 and their interaction with the membrane
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Maximizing photosynthetic efficiency and culture productivity in cyanobacteria upon minimizing the phycobilisome light-harvesting antenna size
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The amazing phycobilisome
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Detection and Characterization of a Mycobacterial L-Arabinofuranose ABC Transporter Identified with a Rapid Lipoproteomics Protocol
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Systems and synthetic biology for the biotechnological application of cyanobacteria
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Genetic and metabolic advances in the engineering of cyanobacteria
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Chromatophore Genome Sequence of Paulinella Sheds Light on Acquisition of Photosynthesis by Eukaryotes
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Awakening of a Dormant Cyanobacterium from Nitrogen Chlorosis Reveals a Genetically Determined Program
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sll1961 is a novel regulator of phycobilisome degradation during nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803
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An expanding universe of small proteins
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Retapamulin-Assisted Ribosome Profiling Reveals the Alternative Bacterial Proteome
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PetG and PetN, but not PetL, are essential subunits of the cytochrome b6f complex from Synechocystis PCC 6803
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Cytochrome b6f: structure for signalling and vectorial metabolism
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2‐Oxoglutarate increases the binding affinity of the NtcA (nitrogen control) transcription factor for the Synechococcus glnA promoter
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Structure and function of photosystem I: interaction with its soluble electron carriers and external antenna systems
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Cyanobacterial phycobilisomes. Characterization of the phycobilisomes of Synechococcus sp. 6301.
inferredcites →https://doi.org/10.1016/s0378-1097(00)00541-3openalex-snapshot
Expression of two nblA-homologous genes is required for phycobilisome degradation in nitrogen-starved Synechocystis sp. PCC6803
inferredcites →https://doi.org/10.1021/bi026012+openalex-snapshot
Proteomic Analysis of a Highly Active Photosystem II Preparation from the Cyanobacterium Synechocystis sp. PCC 6803 Reveals the Presence of Novel Polypeptides
inferredcites →https://doi.org/10.1021/bi102044bopenalex-snapshot
NdhP and NdhQ: Two Novel Small Subunits of the Cyanobacterial NDH-1 Complex
inferredcites →https://doi.org/10.1023/b:jsfg.0000029237.70316.52openalex-snapshot
SUMO fusions and SUMO-specific protease for efficient expression and purification of proteins
inferredcites →https://doi.org/10.1038/ismej.2014.167openalex-snapshot
Comparative genomics reveals surprising divergence of two closely related strains of uncultivated UCYN-A cyanobacteria
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Global quantification of mammalian gene expression control
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The Perseus computational platform for comprehensive analysis of (prote)omics data
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Detecting protein–protein interactions by far western blotting
inferredcites →https://doi.org/10.1038/nrmicro.2018.9openalex-snapshot
The microbial nitrogen-cycling network
inferredcites →https://doi.org/10.1038/nrmicro3378openalex-snapshot
Prochlorococcus: the structure and function of collective diversity
inferredcites →https://doi.org/10.1038/nsmb.1559openalex-snapshot
Cyanobacterial photosystem II at 2.9-Å resolution and the role of quinones, lipids, channels and chloride
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A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle
inferredcites →https://doi.org/10.1038/s41598-019-38621-8openalex-snapshot
Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species
inferredcites →https://doi.org/10.1038/s41598-019-40055-1openalex-snapshot
Asymmetric paralog evolution between the “cryptic” gene Bmp16 and its well-studied sister genes Bmp2 and Bmp4
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Variations in the non-coding transcriptome as a driver of inter-strain divergence and physiological adaptation in bacteria
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NtcA represses transcription of gifA and gifB, genes that encode inhibitors of glutamine synthetase type I from Synechocystis sp. PCC 6803
inferredcites →https://doi.org/10.1046/j.1365-2958.2003.03768.xopenalex-snapshot
The NblAI protein from the filamentous cyanobacterium Tolypothrix PCC 7601: regulation of its expression and interactions with phycobilisome components
inferredcites →https://doi.org/10.1073/pnas.072587199openalex-snapshot
Transcriptional activation of NtcA-dependent promoters of Synechococcus sp. PCC 7942 by 2-oxoglutarate in vitro
inferredcites →https://doi.org/10.1073/pnas.091062498openalex-snapshot
Significance analysis of microarrays applied to the ionizing radiation response
inferredcites →https://doi.org/10.1073/pnas.1015154108openalex-snapshot
An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803
inferredcites →https://doi.org/10.1073/pnas.1307701110openalex-snapshot
Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
inferredcites →https://doi.org/10.1073/pnas.1404097111openalex-snapshot
PipX, the coactivator of NtcA, is a global regulator in cyanobacteria
inferredcites →https://doi.org/10.1073/pnas.1508412112openalex-snapshot
The sRNA NsiR4 is involved in nitrogen assimilation control in cyanobacteria by targeting glutamine synthetase inactivating factor IF7
inferredcites →https://doi.org/10.1073/pnas.95.18.11008openalex-snapshot
A response regulator of cyanobacteria integrates diverse environmental signals and is critical for survival under extreme conditions
inferredcites →https://doi.org/10.1074/jbc.m105297200openalex-snapshot
Cyanobacteria Perceive Nitrogen Status by Sensing Intracellular 2-Oxoglutarate Levels
inferredcites →https://doi.org/10.1074/jbc.m113.520601openalex-snapshot
Degradation of Phycobilisomes in Synechocystis sp. PCC6803
inferredcites →https://doi.org/10.1074/jbc.m507243200openalex-snapshot
Crystal Structure of NblA from Anabaena sp. PCC 7120, a Small Protein Playing a Key Role in Phycobilisome Degradation
inferredcites →https://doi.org/10.1074/jbc.m805823200openalex-snapshot
NblA, a Key Protein of Phycobilisome Degradation, Interacts with ClpC, a HSP100 Chaperone Partner of a Cyanobacterial Clp Protease
inferredcites →https://doi.org/10.1074/jbc.m809196200openalex-snapshot
Structure-Function, Stability, and Chemical Modification of the Cyanobacterial Cytochrome b6f Complex from Nostoc sp. PCC 7120
inferredcites →https://doi.org/10.1074/mcp.m113.031591openalex-snapshot
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
inferredcites →https://doi.org/10.1074/mcp.ra118.000699openalex-snapshot
Chlorosis as a Developmental Program in Cyanobacteria: The Proteomic Fundament for Survival and Awakening
inferredcites →https://doi.org/10.1093/dnares/dss024openalex-snapshot
Microevolution in Cyanobacteria: Re-sequencing a Motile Substrain of Synechocystis sp. PCC 6803
inferredcites →https://doi.org/10.1093/dnares/dsu018openalex-snapshot
Comparative Analysis of the Primary Transcriptome of Synechocystis sp. PCC 6803
inferredcites →https://doi.org/10.1093/nar/gkg161openalex-snapshot
Structural classification of zinc fingers: SURVEY AND SUMMARY
inferredcites →https://doi.org/10.1093/nar/gkw1131openalex-snapshot
CyanoBase: a large-scale update on its 20th anniversary
inferredcites →https://doi.org/10.1093/nar/gkx860openalex-snapshot
Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803
inferredcites →https://doi.org/10.1093/nar/gky1106openalex-snapshot
The PRIDE database and related tools and resources in 2019: improving support for quantification data
inferredcites →https://doi.org/10.1093/nar/gky427openalex-snapshot
SWISS-MODEL: homology modelling of protein structures and complexes
inferredcites →https://doi.org/10.1093/pcp/pcr140openalex-snapshot
Interactions Between Histidine Kinase NblS and the Response Regulators RpaB and SrrA are Involved in the Bleaching Process of the Cyanobacterium Synechococcus elongatus PCC 7942
inferredcites →https://doi.org/10.1099/00221287-111-1-1openalex-snapshot
Generic Assignments, Strain Histories and Properties of Pure Cultures of Cyanobacteria
inferredcites →https://doi.org/10.1099/00221287-144-9-2449openalex-snapshot
Nitrogen-starvation-induced chlorosis in Synechococcus PCC 7942: adaptation to long-term survival
inferredcites →https://doi.org/10.1099/mic.0.27883-0openalex-snapshot
Acclimation of unicellular cyanobacteria to macronutrient deficiency: emergence of a complex network of cellular responses
inferredcites →https://doi.org/10.1105/tpc.114.123919openalex-snapshot
Discovery of a Chlorophyll Binding Protein Complex Involved in the Early Steps of Photosystem II Assembly in Synechocystis
inferredcites →https://doi.org/10.1111/1462-2920.14447openalex-snapshot
Nitrogen chlorosis in unicellular cyanobacteria – a developmental program for surviving nitrogen deprivation
inferredcites →https://doi.org/10.1111/j.1365-2958.2005.04844.xopenalex-snapshot
NblC, a novel component required for pigment degradation during starvation in Synechococcus PCC 7942
inferredcites →https://doi.org/10.1111/j.1365-2958.2006.05231.xopenalex-snapshot
Interaction network in cyanobacterial nitrogen regulation: PipX, a protein that interacts in a 2‐oxoglutarate dependent manner with PII and NtcA
inferredcites →https://doi.org/10.1111/j.1365-2958.2007.06081.xopenalex-snapshot
A small protein from the bop–brp intergenic region of Halobacterium salinarum contains a zinc finger motif and regulates bop and crtB1 transcription
inferredcites →https://doi.org/10.1111/tpj.12931openalex-snapshot
The proteolysis adaptor, NblA, is essential for degradation of the core pigment of the cyanobacterial light‐harvesting complex
inferredcites →https://doi.org/10.1111/tpj.13896openalex-snapshot
Decomposition of cyanobacterial light harvesting complexes: NblA‐dependent role of the bilin lyase homolog NblB
inferredcites →https://doi.org/10.1111/tpj.14647openalex-snapshot
The role of lyases, NblA and NblB proteins and bilin chromophore transfer in restructuring the cyanobacterial light‐harvesting complex‡
inferredcites →https://doi.org/10.1126/science.1165340openalex-snapshot
Globally Distributed Uncultivated Oceanic N 2 -Fixing Cyanobacteria Lack Oxygenic Photosystem II
inferredcites →https://doi.org/10.1128/jb.174.14.4718-4726.1992openalex-snapshot
Chlorosis induced by nutrient deprivation in Synechococcus sp. strain PCC 7942: not all bleaching is the same
inferredcites →https://doi.org/10.1128/jb.181.2.610-617.1999openalex-snapshot
A Polypeptide with Similarity to Phycocyanin α-Subunit Phycocyanobilin Lyase Involved in Degradation of Phycobilisomes
inferredcites →https://doi.org/10.1128/jb.183.5.1505-1510.2001openalex-snapshot
A Eukaryotic-Type Protein Kinase, SpkA, Is Required for Normal Motility of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC 6803
inferredcites →https://doi.org/10.1128/jb.184.9.2481-2490.2002openalex-snapshot
nblS, a Gene Involved in Controlling Photosynthesis-Related Gene Expression during High Light and Nutrient Stress inSynechococcus elongatusPCC 7942
inferredcites →https://doi.org/10.1128/mbio.02819-18openalex-snapshot
Identifying Small Proteins by Ribosome Profiling with Stalled Initiation Complexes
inferredcites →https://doi.org/10.1128/mmbr.57.3.725-749.1993openalex-snapshot
The phycobilisome, a light-harvesting complex responsive to environmental conditions
inferredcites →https://doi.org/10.1128/mmbr.63.1.106-127.1999openalex-snapshot
Prochlorococcus , a Marine Photosynthetic Prokaryote of Global Significance
inferredcites →https://doi.org/10.1186/1471-2199-10-79openalex-snapshot
Analysis of current and alternative phenol based RNA extraction methodologies for cyanobacteria
inferredcites →https://doi.org/10.1186/1756-0500-7-157openalex-snapshot
In silico prediction of protein-protein interactions in human macrophages
inferredcites →https://doi.org/10.1186/s12866-016-0896-zopenalex-snapshot
Small proteins in cyanobacteria provide a paradigm for the functional analysis of the bacterial micro-proteome
inferredcites →https://doi.org/10.1371/journal.pgen.1000173openalex-snapshot
The Challenge of Regulation in a Minimal Photoautotroph: Non-Coding RNAs in Prochlorococcus
inferredcites →https://doi.org/10.1371/journal.pone.0056470openalex-snapshot
CRISPR-Cas Systems in the Cyanobacterium Synechocystis sp. PCC6803 Exhibit Distinct Processing Pathways Involving at Least Two Cas6 and a Cmr2 Protein
inferredcites →https://doi.org/10.1371/journal.pone.0137652openalex-snapshot
AQUA Cloning: A Versatile and Simple Enzyme-Free Cloning Approach
inferredcites →https://doi.org/10.15252/msb.20145558openalex-snapshot
Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome‐reduced bacterium
inferredcites →https://doi.org/10.3389/fmicb.2019.01428openalex-snapshot
The Signal Transduction Protein PII Controls Ammonium, Nitrate and Urea Uptake in Cyanobacteria
inferredcites →https://doi.org/10.3389/fmolb.2018.00091openalex-snapshot
The PII-NAGK-PipX-NtcA Regulatory Axis of Cyanobacteria: A Tale of Changing Partners, Allosteric Effectors and Non-covalent Interactions
inferredcites →https://doi.org/10.3390/molecules200814621openalex-snapshot
Regulation of the scp Genes in the Cyanobacterium Synechocystis sp. PCC 6803—What is New?
inferredcites →https://doi.org/10.4161/rna.24160openalex-snapshot
Adaptation and modification of three CRISPR loci in two closely related cyanobacteria

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Nitrite secretion by cyanobacteria is controlled by the small protein NirP1
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Surviving the long fast: biochemical and photosynthetic acclimation of Synechocystis sp. CCNM 2501 to chronic nitrogen and phosphorus starvation
inferred← citeshttps://doi.org/10.3389/fpls.2022.1036839openalex-snapshot
Autofluorescence-based high-throughput isolation of nonbleaching Cyanidioschyzon merolae strains under nitrogen-depletion
inferred← citeshttps://doi.org/10.3390/ijms24076606openalex-snapshot
Site-2 Protease Slr1821 Regulates Carbon/Nitrogen Homeostasis during Ammonium Stress Acclimation in Cyanobacterium Synechocystis sp. PCC 6803
inferred← citeshttps://doi.org/10.3390/ijms24119733openalex-snapshot
The Unique Light-Harvesting System of the Algal Phycobilisome: Structure, Assembly Components, and Functions
inferred← citeshttps://doi.org/10.3390/ijms26073116openalex-snapshot
Synthetic Biology Strategies and Tools to Modulate Photosynthesis in Microbes
inferred← citeshttps://doi.org/10.3390/life10120322openalex-snapshot
Small but Smart: On the Diverse Role of Small Proteins in the Regulation of Cyanobacterial Metabolism
inferred← citeshttps://doi.org/10.3390/microorganisms10081657openalex-snapshot
To Die or Not to Die—Regulated Cell Death and Survival in Cyanobacteria
inferred← citeshttps://doi.org/10.3390/microorganisms11102379openalex-snapshot
The Signal Transduction Protein PII Controls the Levels of the Cyanobacterial Protein PipX
inferred← citeshttps://doi.org/10.64898/2025.12.20.695498openalex-snapshot
A revised genome annotation of the model cyanobacterium Synechocystis based on start and stop codon-enriched ribosome profiling and proteogenomics
inferred← citeshttps://doi.org/10.64898/2026.08.10.743958openalex-snapshot
Deletion of the gene for a cyanobacterial ribosome-associated protein affects the carbon/nitrogen metabolism
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