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TNT: Tree Analysis Using New Technology
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1006/clad.1996.0001openalex-snapshot
OPTIMIZATION ALIGNMENT: THE END OF MULTIPLE SEQUENCE ALIGNMENT IN PHYLOGENETICS?
inferredcites →https://doi.org/10.1006/clad.1998.0081openalex-snapshot
Searching for Most Parsimonious Trees with Simulated Evolutionary Optimization
inferredcites →https://doi.org/10.1006/clad.2000.0155openalex-snapshot
Simulated Evolutionary Optimization and Local Search: Introduction and Application to Tree Search
inferredcites →https://doi.org/10.1006/clad.2000.0156openalex-snapshot
Methods for Quick Consensus Estimation
inferredcites →https://doi.org/10.1007/978-1-4020-6754-9_12413openalex-snapshot
PAUP (phylogenetic analysis using parsimony)
inferredcites →https://doi.org/10.1007/978-3-0348-8125-8openalex-snapshot
Techniques in Molecular Systematics and Evolution
inferredcites →https://doi.org/10.1007/978-3-0348-8125-8_4openalex-snapshot
Techniques for Analyzing Large Data Sets
inferredcites →https://doi.org/10.1073/pnas.162224399openalex-snapshot
The metapopulation genetic algorithm: An efficient solution for the problem of large phylogeny estimation
inferredcites →https://doi.org/10.1093/bioinformatics/17.suppl_1.s190openalex-snapshot
Designing fast converging phylogenetic methods
inferredcites →https://doi.org/10.1093/sysbio/46.4.590openalex-snapshot
NEXUS: An Extensible File Format for Systematic Information
inferredcites →https://doi.org/10.1111/j.1096-0031.1993.tb00209.xopenalex-snapshot
ESTIMATING CHARACTER WEIGHTS DURING TREE SEARCH
inferredcites →https://doi.org/10.1111/j.1096-0031.1996.tb00196.xopenalex-snapshot
PARSIMONY JACKKNIFING OUTPERFORMS NEIGHBOR‐JOINING
inferredcites →https://doi.org/10.1111/j.1096-0031.1999.tb00277.xopenalex-snapshot
The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis
inferredcites →https://doi.org/10.1111/j.1096-0031.1999.tb00278.xopenalex-snapshot
Analyzing Large Data Sets in Reasonable Times: Solutions for Composite Optima
inferredcites →https://doi.org/10.1111/j.1096-0031.2001.tb00101.xopenalex-snapshot
Simulated Evolutionary Optimization and Local Search: Introduction and Application to Tree Search
inferredcites →https://doi.org/10.1111/j.1096-0031.2001.tb00102.xopenalex-snapshot
Methods for Quick Consensus Estimation
inferredcites →https://doi.org/10.1111/j.1096-0031.2003.tb00376.xopenalex-snapshot
Improvements to resampling measures of group support
inferredcites →https://doi.org/10.1111/j.1558-5646.1985.tb00420.xopenalex-snapshot
CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
inferredcites →https://doi.org/10.1111/j.1558-5646.1988.tb02497.xopenalex-snapshot
THE LIMITS OF AMINO ACID SEQUENCE DATA IN ANGIOSPERM PHYLOGENETIC RECONSTRUCTION
inferredcites →https://doi.org/10.1126/science.1065889openalex-snapshot
Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology
inferredcites →https://doi.org/10.1636/0161-8202(2002)030[0110:acaotc]2.0.co;2openalex-snapshot
A CLADISTIC ANALYSIS OF THE CYPHOPHTHALMID GENERA (OPILIONES, CYPHOPHTHALMI)
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/zootaxa.3670.1.1zenodo-depositor-declared
A morphology-based phylogeny of the Liolaemus alticolor–bibronii group (Iguania: Liolaemidae)
inferred← citeshttps://doi.org/10.5852/ejt.2023.890.2257zenodo-depositor-declared
A new species of Liolaemus (Iguania: Liolaemidae) from the hot deserts of northern Patagonia, Argentina
inferred← citeshttps://doi.org/10.1002/9780470057339.vas071openalex-snapshot
Systematics, Numerical Methods
inferred← citeshttps://doi.org/10.1002/9781118445112.stat07642openalex-snapshot
Systematics, Numerical Methods
inferred← citeshttps://doi.org/10.1002/ar.25423openalex-snapshot
The skull of Liolaemus huayra compared to other species of Liolaemus and Phymaturus (Squamata, Liolaemidae)
inferred← citeshttps://doi.org/10.1002/gj.1343openalex-snapshot
Phylogenetic analysis of the late Cambrian–early Ordovician genus Parabolinella Brøgger (Trilobita, Olenidae)
inferred← citeshttps://doi.org/10.1002/jmor.20902openalex-snapshot
Morphology of the mandibles and the first maxillae in the family Lithobiidae (Myriapoda, Chilopoda), with remarks on their phylogenetic significance
inferred← citeshttps://doi.org/10.1002/jmor.21226openalex-snapshot
Neuroanatomy of the lumbosacral plexus in a highly diversified clade of South‐American lizards. Evolution and phylogenetic implications
inferred← citeshttps://doi.org/10.1002/jmor.21629openalex-snapshot
Description of the neuroanatomy of the brachial plexus in South American lizards. Phylogenetic implications
inferred← citeshttps://doi.org/10.1002/jmv.22068openalex-snapshot
Molecular characterization of hepatitis C virus genotype 4 sequences in HIV‐coinfected patients from Argentina
inferred← citeshttps://doi.org/10.1002/spp2.1016openalex-snapshot
The cranial endocast of the M iddle D evonian dipnoan D ipterus valenciennesi and a fossilized dipnoan otoconial mass
inferred← citeshttps://doi.org/10.1002/tax.573017openalex-snapshot
Microsatellites resolve the taxonomy of the polyploid Cardamine digitata aggregate (Brassicaceae)
inferred← citeshttps://doi.org/10.1002/tax.592012openalex-snapshot
Geographical speciation related to Pleistocene range shifts in the western Mediterranean mountains ( Reseda sect. Glaucoreseda , Resedaceae)
inferred← citeshttps://doi.org/10.1007/11844297_77openalex-snapshot
A Distance-Based Information Preservation Tree Crossover for the Maximum Parsimony Problem
inferred← citeshttps://doi.org/10.1007/978-3-0348-8125-8_4openalex-snapshot
Techniques for Analyzing Large Data Sets
inferred← citeshttps://doi.org/10.1007/978-3-319-01568-2_31openalex-snapshot
Phylogenetic Analysis of Four Dung Beetle Species of Neotropical Genus Oxyternon (Coleoptera: Scarabaeidae: Scarabaeinae) Based on 28S and COI Partial Regions
inferred← citeshttps://doi.org/10.1007/978-3-642-01184-9_15openalex-snapshot
A Memetic Algorithm for Phylogenetic Reconstruction with Maximum Parsimony
inferred← citeshttps://doi.org/10.1007/s00114-014-1216-9openalex-snapshot
Juvenile morphology in baleen whale phylogeny
inferred← citeshttps://doi.org/10.1007/s00265-008-0548-xopenalex-snapshot
Eggshell spotting in brood parasitic shiny cowbirds (Molothrus bonariensis) is not linked to the female sex chromosome
inferred← citeshttps://doi.org/10.1007/s00606-006-0449-2openalex-snapshot
Phylogenetic position of the Oedogoniales within the green algae (Chlorophyta) and the evolution of the absolute orientation of the flagellar apparatus
inferred← citeshttps://doi.org/10.1007/s00606-011-0564-6openalex-snapshot
Distributional patterns of the species of Valeriana (Valerianaceae) in southern South America
inferred← citeshttps://doi.org/10.1007/s00606-013-0802-1openalex-snapshot
Peaches and almonds: phylogeny of Prunus subg. Amygdalus (Rosaceae) based on DNA sequences and morphology
inferred← citeshttps://doi.org/10.1007/s00606-014-1156-zopenalex-snapshot
Species delimitation of Cattleya coccinea and C. mantiqueirae (Orchidaceae): insights from phylogenetic and population genetics analyses
inferred← citeshttps://doi.org/10.1007/s10709-010-9530-4openalex-snapshot
Hybrid speciation in Heliconius butterflies? A review and critique of the evidence
inferred← citeshttps://doi.org/10.1007/s10709-011-9621-xopenalex-snapshot
Evaluation of the internal transcribed spacer 2 (ITS2) as a molecular marker for phylogenetic inference using sequence and secondary structure information in blow flies (Diptera: Calliphoridae)
inferred← citeshttps://doi.org/10.1007/s10914-023-09698-wopenalex-snapshot
New materials of Pliorhinus ringstroemi from the Linxia Basin (Late Miocene, eastern Asia) and their taxonomical and evolutionary implications
inferred← citeshttps://doi.org/10.1007/s11033-011-0675-8openalex-snapshot
Phylogeny of kangaroo apples (Solanum subg. Archaesolanum, Solanaceae)
inferred← citeshttps://doi.org/10.1007/s11103-013-0021-8openalex-snapshot
The Arabidopsis thaliana ortholog of a purported maize cholinesterase gene encodes a GDSL-lipase
inferred← citeshttps://doi.org/10.1007/s11262-008-0301-6openalex-snapshot
Genomic and phylogenetic analysis of Argentinian Equid Herpesvirus 1 strains
inferred← citeshttps://doi.org/10.1007/s11692-014-9270-yopenalex-snapshot
Anuran Locomotion: Ontogeny and Morphological Variation of a Distinctive Set of Muscles
inferred← citeshttps://doi.org/10.1007/s12225-011-9257-0openalex-snapshot
Phylogeny and biogeography of the lamioid genus Phlomis (Lamiaceae)
inferred← citeshttps://doi.org/10.1007/s12229-013-9129-4openalex-snapshot
DNA Barcoding in Endangered Mesoamerican Groups of Plants
inferred← citeshttps://doi.org/10.1007/s13127-010-0033-zopenalex-snapshot
Establishing species and species boundaries in Sabellastarte Krøyer, 1856 (Annelida: Sabellidae): an integrative approach
inferred← citeshttps://doi.org/10.1007/s13127-016-0268-4openalex-snapshot
Update of genetic information for the white-clawed crayfish in Spain, with new insights into its population genetics and origin
inferred← citeshttps://doi.org/10.1007/s13219-010-0018-7openalex-snapshot
Morphométrie géométrique et classification phylogénétique, application à la question de l’origine d’Homo sapiens en Asie
inferred← citeshttps://doi.org/10.1007/s13364-011-0070-9openalex-snapshot
The phylogenetic relationships of the Andean swamp rat genus Neotomys (Rodentia, Cricetidae, Sigmodontinae) based on mitochondrial and nuclear markers
inferred← citeshttps://doi.org/10.1016/j.biocontrol.2009.05.019openalex-snapshot
The evolution of food preferences in Coccinellidae
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2005.06.003openalex-snapshot
Reconstruction of large phylogenetic trees: A parallel approach
inferred← citeshttps://doi.org/10.1016/j.cretres.2017.08.012openalex-snapshot
A new Brachiosauridae Sauropod dinosaur from the lower Cretaceous of Europe (Soria Province, Spain)
inferred← citeshttps://doi.org/10.1016/j.cretres.2021.104869openalex-snapshot
The first Cearachelyini (Pelomedusoides, Bothremydidae) turtle from the Upper Cretaceous of Patagonia, and an overview of the occurrence and diversity of Pelomedusoides in Patagonia
inferred← citeshttps://doi.org/10.1016/j.crpv.2011.03.006openalex-snapshot
A new basilosaurid (Cetacea, Pelagiceti) from the Late Eocene to Early Oligocene Otuma Formation of Peru
inferred← citeshttps://doi.org/10.1016/j.geobios.2009.06.003openalex-snapshot
New triconodontids (Mammalia) from the Lower Cretaceous Shahai and Fuxin formations, northeastern China
inferred← citeshttps://doi.org/10.1016/j.ijpara.2008.03.008openalex-snapshot
Geography and host specificity: Two forces behind the genetic structure of the freshwater fish parasite Ligula intestinalis (Cestoda: Diphyllobothriidae)
inferred← citeshttps://doi.org/10.1016/j.jcz.2022.11.004openalex-snapshot
Morphology-based phylogenetic analysis of South American Sericini chafers (Coleoptera, Scarabaeidae) contrasts patterns of morphological disparity and current classification
inferred← citeshttps://doi.org/10.1016/j.jcz.2024.06.006openalex-snapshot
Phylogeny and classification of Lepidodexia Brauer & Bergenstamm (Diptera: Sarcophagidae)
inferred← citeshttps://doi.org/10.1016/j.jmb.2008.04.037openalex-snapshot
The 185/333 Gene Family Is a Rapidly Diversifying Host-Defense Gene Cluster in the Purple Sea Urchin Strongylocentrotus purpuratus
inferred← citeshttps://doi.org/10.1016/j.jsames.2020.102499openalex-snapshot
A new peculiar species of the subterranean rodent Ctenomys (Rodentia, Ctenomyidae) from the Holocene of central Argentina
inferred← citeshttps://doi.org/10.1016/j.jviromet.2006.01.005openalex-snapshot
A long distance RT-PCR able to amplify the Pestivirus genome
inferred← citeshttps://doi.org/10.1016/j.mambio.2009.09.005openalex-snapshot
A new species of Phyllotis (Rodentia, Cricetidae, Sigmodontinae) from Tucumán province, Argentina
inferred← citeshttps://doi.org/10.1016/j.riam.2011.03.007openalex-snapshot
Isolation and characterization of two strains of Fusarium oxysporum causing potato dry rot in Solanum tuberosum in Colombia
inferred← citeshttps://doi.org/10.1016/j.vetmic.2006.06.004openalex-snapshot
Molecular characterization of bovine rotavirus circulating in beef and dairy herds in Argentina during a 10-year period (1994–2003)
inferred← citeshttps://doi.org/10.1016/j.ygeno.2018.11.034openalex-snapshot
Genome-wide analysis of the Tetrahymena thermophila glutathione S-transferase gene superfamily
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.04.001openalex-snapshot
A modern approach to rotiferan phylogeny: Combining morphological and molecular data
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.05.012openalex-snapshot
Species diversification patterns in the Polynesian jumping spider genus Havaika Prószyński, 2001 (Araneae, Salticidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.12.016openalex-snapshot
Molecular systematics and biogeography of Resedaceae based on ITS and trnL-F sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.02.024openalex-snapshot
DNA-based taxonomy for associating adults and larvae in multi-species assemblages of chafers (Coleoptera: Scarabaeidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.06.009openalex-snapshot
A molecular phylogenetic analysis of the Scarabaeinae (dung beetles)
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.09.017openalex-snapshot
Searching for natural lineages within the Cerylonid Series (Coleoptera: Cucujoidea)
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.11.024openalex-snapshot
Phylogenetic relationships of butterflies of the tribe Acraeini (Lepidoptera, Nymphalidae, Heliconiinae) and the evolution of host plant use
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.11.029openalex-snapshot
A protocol for large-scale rRNA sequence analysis: Towards a detailed phylogeny of Coleoptera
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.02.010openalex-snapshot
Towards the phylogeny of chafers (Sericini): Analysis of alignment-variable sequences and the evolution of segment numbers in the antennal club
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.02.022openalex-snapshot
Phylogenetic relationships among sea anemones (Cnidaria: Anthozoa: Actiniaria)
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.04.026openalex-snapshot
Molecular phylogenetics of cixiid planthoppers (Hemiptera: Fulgoromorpha): New insights from combined analyses of mitochondrial and nuclear genes
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.11.012openalex-snapshot
Delimiting species boundaries within Dermanyssus Dugès, 1834 (Acari:Dermanyssidae) using a total evidence approach
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.05.022openalex-snapshot
Molecular phylogeny of the Acre clade (Crassulaceae): Dealing with the lack of definitions for Echeveria and Sedum
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.07.035openalex-snapshot
The phylogenetic relationships of cynopterine fruit bats (Chiroptera: Pteropodidae: Cynopterinae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.11.011openalex-snapshot
Galatheoidea are not monophyletic – Molecular and morphological phylogeny of the squat lobsters (Decapoda: Anomura) with recognition of a new superfamily
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.04.011openalex-snapshot
The phylogeny of monkey beetles based on mitochondrial and ribosomal RNA genes (Coleoptera: Scarabaeidae: Hopliini)
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.04.016openalex-snapshot
Phylogenetic relationships and the temporal context for the diversification of African characins of the family Alestidae (Ostariophysi: Characiformes): Evidence from DNA sequence data
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.07.011openalex-snapshot
A molecular phylogeny of the Sierra-Finches (Phrygilus, Passeriformes): Extreme polyphyly in a group of Andean specialists
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.09.015openalex-snapshot
Molecular phylogeny of the squeak beetles, a family with disjunct Palearctic-Australian range
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.06.029openalex-snapshot
A molecular phylogenetic analysis of the vampire moths and their fruit-piercing relatives (Lepidoptera: Erebidae: Calpinae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.10.021openalex-snapshot
Phylogenetic species recognition reveals host-specific lineages among poplar rust fungi
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.05.027openalex-snapshot
The role of birds and insects in pollination shifts of Scrophularia (Scrophulariaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2016.05.012openalex-snapshot
A molecular phylogeny of rose chafers (Coleoptera: Scarabaeidae: Cetoniinae) reveals a complex and concerted morphological evolution related to their flight mode
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106662openalex-snapshot
Reassessing the role of morphology in bryophyte phylogenetics: Combined data improves phylogenetic inference despite character conflict
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108557openalex-snapshot
Limitations of molecular dating using constant birth–death rate priors in deep time reflected in Brachiopoda evolution
inferred← citeshttps://doi.org/10.1016/j.yqres.2010.11.006openalex-snapshot
Taxonomic status and paleoecology of Rusingoryx atopocranion (Mammalia, Artiodactyla), an extinct Pleistocene bovid from Rusinga Island, Kenya
inferred← citeshttps://doi.org/10.1016/s0065-2458(06)68004-2openalex-snapshot
Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions
inferred← citeshttps://doi.org/10.1017/s0007485312000302openalex-snapshot
Phylogeographic structure, outbreeding depression, and reluctant virgin oviposition in the bean thrips,Caliothrips fasciatus(Pergande) (Thysanoptera: Thripidae), in California
inferred← citeshttps://doi.org/10.1038/nature13576openalex-snapshot
Hallucigenia’s onychophoran-like claws and the case for Tactopoda
inferred← citeshttps://doi.org/10.1038/s41598-017-14677-2openalex-snapshot
Descendants of the Jurassic turiasaurs from Iberia found refuge in the Early Cretaceous of western USA
inferred← citeshttps://doi.org/10.1038/s41598-020-78803-3openalex-snapshot
A comprehensive analysis of the phylogenetic signal in ramp sequences in 211 vertebrates
inferred← citeshttps://doi.org/10.1038/s42003-023-04809-yopenalex-snapshot
A burst of genomic innovation at the origin of placental mammals mediated embryo implantation
inferred← citeshttps://doi.org/10.1046/j.1463-6409.2002.00080.xopenalex-snapshot
Studies in Corinnidae: cladistic analysis of 38 corinnid and liocranid genera, and transfer of Phrurolithinae
inferred← citeshttps://doi.org/10.1071/is05044openalex-snapshot
A century later – a total evidence re-evaluation of the phylogeny of scutigeromorph centipedes (Myriapoda : Chilopoda)
inferred← citeshttps://doi.org/10.1071/is10015openalex-snapshot
A systematic revision of the South African Pettalidae (Arachnida : Opiliones : Cyphophthalmi) based on a combined analysis of discrete and continuous morphological characters with the description of seven new species
inferred← citeshttps://doi.org/10.1071/is10030openalex-snapshot
Systematic revision and cladistic analysis of the Brazilian subfamily Sodreaninae (Opiliones:Gonyleptidae)
inferred← citeshttps://doi.org/10.1071/is11030openalex-snapshot
Systematic revision and phylogeny of the Australian myrmecomorphic seed bug genus Daerlac Signoret (Insecta : Heteroptera : Rhyparochromidae : Udeocorini)
inferred← citeshttps://doi.org/10.1080/00379271.2011.10697735openalex-snapshot
Heterogeneity in shore flies – the case ofGlenantheHaliday (Diptera: Ephydridae) in the Old World
inferred← citeshttps://doi.org/10.1080/02724634.2011.586663openalex-snapshot
A revision of the Lari (Aves, Charadriiformes) from the early Miocene of Saint-Gérand-le-Puy (Allier, France)
inferred← citeshttps://doi.org/10.1080/02724634.2012.633585openalex-snapshot
A new species ofBorealosuchus(Crocodyliformes, Eusuchia) from the Late Cretaceous–early Paleogene of New Jersey
inferred← citeshttps://doi.org/10.1080/02724634.2012.670178openalex-snapshot
The braincase of Chanaresuchus ischigualastensis (Archosauriformes) from the Late Triassic of Argentina
inferred← citeshttps://doi.org/10.1080/02724634.2014.855225openalex-snapshot
Enigmatic crocodyliforms from the early Miocene of Cuba
inferred← citeshttps://doi.org/10.1080/03036758.2024.2314505openalex-snapshot
Aureia rerehua, a new platanistoid dolphin from the Oligocene of New Zealand with a unique feeding method
inferred← citeshttps://doi.org/10.1080/10635150600969872openalex-snapshot
SDM: A Fast Distance-Based Approach for (Super)Tree Building in Phylogenomics
inferred← citeshttps://doi.org/10.1080/10635150701431905openalex-snapshot
On Divide-and-Conquer Strategies for Parsimony Analysis of Large Data Sets: Rec-I-DCM3 versus TNT
inferred← citeshttps://doi.org/10.1080/14772000.2012.694375openalex-snapshot
Historical biogeography of mygalomorph spiders from the peripampasic orogenic arc based on track analysis and PAE as a panbiogeographical tool
inferred← citeshttps://doi.org/10.1080/14772000.2016.1252441openalex-snapshot
Historical biogeography of Temnocephalida (Platyhelminthes, Rhabdocoela): testing the Gondwanan hypothesis
inferred← citeshttps://doi.org/10.1093/aob/mct214openalex-snapshot
Corolla morphology influences diversification rates in bifid toadflaxes (Linaria sect. Versicolores)
inferred← citeshttps://doi.org/10.1093/bioadv/vbaf300openalex-snapshot
Performance assessment of phylogenetic inference tools using PhyloSmew
inferred← citeshttps://doi.org/10.1093/bioinformatics/btr147openalex-snapshot
Faster exact maximum parsimony search with XMP
inferred← citeshttps://doi.org/10.1093/biolinnean/blaa039openalex-snapshot
Integrative systematics untangles the evolutionary history ofStenochrus(Schizomida: Hubbardiidae), a neglected junkyard genus of North American short-tailed whipscorpions
inferred← citeshttps://doi.org/10.1093/cz/zow092openalex-snapshot
Historical relationships of areas of endemism of the Brazilian Atlantic rain forest: a cladistic biogeographic analysis of harvestman taxa (Arachnida: Opiliones)
inferred← citeshttps://doi.org/10.1093/icb/icq081openalex-snapshot
Phylogenetic Signal in Mitochondrial and Nuclear Markers in Sea Anemones (Cnidaria, Actiniaria)
inferred← citeshttps://doi.org/10.1093/jhered/esq092openalex-snapshot
Recent Trends in Molecular Phylogenetic Analysis: Where to Next?
inferred← citeshttps://doi.org/10.1093/molbev/msac229openalex-snapshot
Transcriptome-based Phylogeny of the Semi-aquatic Bugs (Hemiptera: Heteroptera: Gerromorpha) Reveals Patterns of Lineage Expansion in a Series of New Adaptive Zones
inferred← citeshttps://doi.org/10.1093/molbev/msn160openalex-snapshot
A Multilocus Molecular Phylogeny of the Parrots (Psittaciformes): Support for a Gondwanan Origin during the Cretaceous
inferred← citeshttps://doi.org/10.1093/mollus/eyp025openalex-snapshot
Limpets of the genus Nacella (Patellogastropoda) from the Southwestern Atlantic: species identification based on molecular data
inferred← citeshttps://doi.org/10.1093/nar/gkq807openalex-snapshot
Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics
inferred← citeshttps://doi.org/10.1093/oso/9780198838609.003.0001openalex-snapshot
Genetic data collection, pedigrees, and phylogenies
inferred← citeshttps://doi.org/10.1093/sysbio/syp027openalex-snapshot
Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlaa007openalex-snapshot
Phylogenetic relationships and classification of the Chloropinae of the world (Diptera: Chloropidae)
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlaa161openalex-snapshot
Phylogenetic revision of the shrimp generaEphyrina,MeningodoraandNotostomus(Acanthephyridae: Caridea)
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlaf046openalex-snapshot
A reassessment of Aspidosaurus chiton Broili, 1904 (Temnospondyli: Dissorophoidea) based on a new skeleton from the early Permian of Texas
inferred← citeshttps://doi.org/10.1093/zoolinnean/zly039openalex-snapshot
Oplophoridae (Decapoda: Crustacea): phylogeny, taxonomy and evolution studied by a combination of morphological and molecular methods
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlz070openalex-snapshot
A hard-earned draw: phylogeny-based revision of the deep-sea shrimp Bentheogennema (Decapoda: Benthesicymidae) transfers two species to other genera and reveals two new species
inferred← citeshttps://doi.org/10.1098/rsbl.2016.0081openalex-snapshot
Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data
inferred← citeshttps://doi.org/10.1098/rspb.2010.2443openalex-snapshot
Oldest cingulate skulls provide congruence between morphological and molecular scenarios of armadillo evolution
inferred← citeshttps://doi.org/10.1098/rspb.2012.2526openalex-snapshot
No evidence for directional evolution of body mass in herbivorous theropod dinosaurs
inferred← citeshttps://doi.org/10.1099/ijs.0.65081-0openalex-snapshot
Reclassification of Vibrio fischeri, Vibrio logei, Vibrio salmonicida and Vibrio wodanis as Aliivibrio fischeri gen. nov., comb. nov., Aliivibrio logei comb. nov., Aliivibrio salmonicida comb. nov. and Aliivibrio wodanis comb. nov.
inferred← citeshttps://doi.org/10.1099/ijsem.0.001125openalex-snapshot
Anoxybacillus geothermalis sp. nov., a facultatively anaerobic, endospore-forming bacterium isolated from mineral deposits in a geothermal station
inferred← citeshttps://doi.org/10.1099/vir.0.011791-0openalex-snapshot
Bovine leukemia virus can be classified into seven genotypes: evidence for the existence of two novel clades
inferred← citeshttps://doi.org/10.1101/2020.12.03.409458openalex-snapshot
Molecular basis of the logical evolution of the novel coronavirus SARS-CoV-2: A comparative analysis
inferred← citeshttps://doi.org/10.1101/2021.07.22.453388openalex-snapshot
A burst of regulatory and protein innovation at the origin of placental mammals drove the emergence of placenta and underpins divergent early pregnancy strategies in modern mammals
inferred← citeshttps://doi.org/10.1101/2021.09.01.458614openalex-snapshot
Three new Cenomanian conifers from El Chango (Chiapas, Mexico) offer a snapshot of the geographic mosaic of the Mesozoic conifer decline
inferred← citeshttps://doi.org/10.1101/2022.05.19.492656openalex-snapshot
High Frequency of Dynamic Rearrangements In Crispr loci
inferred← citeshttps://doi.org/10.1101/2022.10.31.514545openalex-snapshot
A representative Performance Assessment of Maximum Likelihood based Phylogenetic Inference Tools
inferred← citeshttps://doi.org/10.1101/2025.10.29.685337openalex-snapshot
larch: mapping the parsimony-optimal landscape of trees for directed exploration
inferred← citeshttps://doi.org/10.1109/bibe.2006.253325openalex-snapshot
Large Grain Size Stochastic Optimization Alignment
inferred← citeshttps://doi.org/10.1109/bibe.2007.4375648openalex-snapshot
Using Parsimony to Guide Maximum Likelihood Searches
inferred← citeshttps://doi.org/10.1109/tcbb.2005.15openalex-snapshot
Topological Rearrangements and Local Search Method for Tandem Duplication Trees
inferred← citeshttps://doi.org/10.1109/tcbb.2012.162openalex-snapshot
Efficient Algorithms for Knowledge-Enhanced Supertree and Supermatrix Phylogenetic Problems
inferred← citeshttps://doi.org/10.1111/cla.12001openalex-snapshot
Major lineages of Nolidae (Lepidoptera, Noctuoidea) elucidated by molecular phylogenetics
inferred← citeshttps://doi.org/10.1111/cla.12006openalex-snapshot
A phylogenetic analysis of the megadiverse C halcidoidea ( H ymenoptera)
inferred← citeshttps://doi.org/10.1111/cla.12008openalex-snapshot
Phylogeny of the sabertoothed felids ( C arnivora: F elidae: M achairodontinae)
inferred← citeshttps://doi.org/10.1111/cla.12013openalex-snapshot
Uncovering historical signature of mitochondrial DNA hidden in the nuclear genome: the biogeography of S chistocercarevisited
inferred← citeshttps://doi.org/10.1111/cla.12024openalex-snapshot
A total‐evidence phylogenetic analysis of H ormaphidinae ( H emiptera: A phididae), with comments on the evolution of galls
inferred← citeshttps://doi.org/10.1111/cla.12056openalex-snapshot
Oblong, a program to analyse phylogenomic data sets with millions of characters, requiring negligible amounts of RAM
inferred← citeshttps://doi.org/10.1111/cla.12065openalex-snapshot
Phylogeny of harvestmen family Gonyleptidae inferred from a multilocus approach (Arachnida: Opiliones)
inferred← citeshttps://doi.org/10.1111/cla.12067openalex-snapshot
Evidence for E urogondwana: the roles of dispersal, extinction and vicariance in the evolution and biogeography of I ndo‐ P acific H ormuridae ( S corpiones: S corpionoidea)
inferred← citeshttps://doi.org/10.1111/cla.12068openalex-snapshot
The thorax of Mantophasmatodea, the morphology of flightlessness, and the evolution of the neopteran insects
inferred← citeshttps://doi.org/10.1111/cla.12069openalex-snapshot
Phylogeny of the symphytan grade of Hymenoptera: new pieces into the old jigsaw(fly) puzzle
inferred← citeshttps://doi.org/10.1111/cla.12082openalex-snapshot
Computer science and parsimony: a reappraisal, with discussion of methods for poorly structured datasets
inferred← citeshttps://doi.org/10.1111/cla.12091openalex-snapshot
Phylogeny of the N orth A merican vaejovid scorpion subfamily S yntropinae Kraepelin, 1905, based on morphology, mitochondrial and nuclear DNA
inferred← citeshttps://doi.org/10.1111/cla.12116openalex-snapshot
300 million years of diversification: elucidating the patterns of orthopteran evolution based on comprehensive taxon and gene sampling
inferred← citeshttps://doi.org/10.1111/cla.12160openalex-snapshot
TNT version 1.5, including a full implementation of phylogenetic morphometrics
inferred← citeshttps://doi.org/10.1111/cla.12196openalex-snapshot
The phylogeny of Galerucinae (Coleoptera: Chrysomelidae) and the performance of mitochondrial genomes in phylogenetic inference compared to nuclear rRNA genes
inferred← citeshttps://doi.org/10.1111/cla.12228openalex-snapshot
Torymidae (Hymenoptera, Chalcidoidea) revised: molecular phylogeny, circumscription and reclassification of the family with discussion of its biogeography and evolution of life‐history traits
inferred← citeshttps://doi.org/10.1111/cla.12239openalex-snapshot
A phylogenetic study of krill (Crustacea: Euphausiacea) reveals new taxa and co‐evolution of morphological characters
inferred← citeshttps://doi.org/10.1111/cla.12340openalex-snapshot
Geometric morphometrics, homology and cladistics: review and recommendations
inferred← citeshttps://doi.org/10.1111/cla.12385openalex-snapshot
Cladistic analysis of morphological data supports a position for Tegulinae (Mollusca: Vetigastropoda) within Turbinidae
inferred← citeshttps://doi.org/10.1111/cla.12400openalex-snapshot
Morphological phylogeny of the Tegulinae (Mollusca: Vetigastropoda) reinforces a Turbinidae position
inferred← citeshttps://doi.org/10.1111/cla.12413openalex-snapshot
Cretaceous and Eocene fossils of the rare extant genusSynneuronLundstrom (Diptera: Canthyloscledidae): evidence of a true Pangean clade
inferred← citeshttps://doi.org/10.1111/cla.12450openalex-snapshot
DUALCOR: a phylogenetic comparative method to evaluate phylogenetic correlation between a character and a non‐evolving external variable
inferred← citeshttps://doi.org/10.1111/cla.12458openalex-snapshot
Evolution of sexual dimorphism and polychromatism in a lineage of tiger moths (Lepidoptera: Erebidae): advancing knowledge of a taxonomically chaotic group
inferred← citeshttps://doi.org/10.1111/cla.12464openalex-snapshot
Exploring the role of climatic niche changes in the evolution of the southern South American genus Baripus (Coleoptera: Carabidae): optimization of non‐hereditary climatic variables and phylogenetic signal measurement
inferred← citeshttps://doi.org/10.1111/cla.12477openalex-snapshot
Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology)
inferred← citeshttps://doi.org/10.1111/ibi.12386openalex-snapshot
Congruence of phenotypic and genetic variation at the subspecific level in a Neotropical passerine
inferred← citeshttps://doi.org/10.1111/j.1095-8312.2007.00907.xopenalex-snapshot
Molecular phylogeny and diversification history of Prosopis (Fabaceae: Mimosoideae)
inferred← citeshttps://doi.org/10.1111/j.1095-8312.2008.00996.xopenalex-snapshot
Patterns of praying mantis auditory system evolution based on morphological, molecular, neurophysiological, and behavioural data
inferred← citeshttps://doi.org/10.1111/j.1095-8312.2008.01072.xopenalex-snapshot
Evolution of habitat preference in Clitellata (Annelida)
inferred← citeshttps://doi.org/10.1111/j.1095-8649.2011.03107.xopenalex-snapshot
Taxonomic review of the genus Trisopterus(Teleostei: Gadidae) with recognition of the capelan Trisopterus capelanus as a valid species
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2001.tb00102.xopenalex-snapshot
Methods for Quick Consensus Estimation
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2004.00042.xopenalex-snapshot
Evolution on a shaky piece of Gondwana: is local endemism recent in New Caledonia?
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2004.00046.xopenalex-snapshot
Resampling measures of group support: a reply to Grant and Kluge
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2005.00064.xopenalex-snapshot
Minority rule supertrees? MRP, Compatibility, and Minimum Flip may display the least frequent groups
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2005.00079.xopenalex-snapshot
A phylogeny of ranid frogs (Anura: Ranoidea: Ranidae), based on a simultaneous analysis of morphological and molecular data
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2006.00105.xopenalex-snapshot
Quantification of the success of phylogenetic inference in simulations
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2006.00121.xopenalex-snapshot
Revision of the Agathidinae (Hymenoptera: Braconidae) with comparisons of static and dynamic alignments
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2006.00122.xopenalex-snapshot
Continuous characters analyzed as such
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2006.00128.xopenalex-snapshot
A molecular phylogeny of annelids
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2006.00140.xopenalex-snapshot
Phylogeny of Macroptilium (Leguminosae): morphological, biochemical and molecular evidence
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2007.00143.xopenalex-snapshot
Phylogeny of the sea spiders (Arthropoda, Pycnogonida) based on direct optimization of six loci and morphology
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2007.00156.xopenalex-snapshot
Parallel evolution of lichen growth forms in the family Roccellaceae (Arthoniales, Ascomycota)
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2007.00157.xopenalex-snapshot
Phylogenetic analysis of host–symbiont specificity and codivergence in bioluminescent symbioses
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2007.00164.xopenalex-snapshot
Molecular phylogenetics of Elateriformia (Coleoptera): evolution of bioluminescence and neoteny
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2007.00176.xopenalex-snapshot
Phylogeny of extant nephilid orb‐weaving spiders (Araneae, Nephilidae): testing morphological and ethological homologies
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2007.00177.xopenalex-snapshot
Cladistic analysis of Echinodorus (Alismataceae): simultaneous analysis of molecular and morphological data
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2007.00189.xopenalex-snapshot
Calculating SPR distances between trees
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2007.00190.xopenalex-snapshot
Phylogeny of bird‐grasshopper subfamily Cyrtacanthacridinae (Orthoptera: Acrididae) and the evolution of locust phase polyphenism
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2008.00217.xopenalex-snapshot
TNT, a free program for phylogenetic analysis
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2008.00221.xopenalex-snapshot
Dynamic homology and phylogenetic systematics: a unified approach using POY
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2008.00242.xopenalex-snapshot
Phylogenetic relationships of the spider family Tetragnathidae (Araneae, Araneoidea) based on morphological and DNA sequence data
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2009.00276.xopenalex-snapshot
Phylogeny of the Ecnomidae (Insecta: Trichoptera)
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2010.00302.xopenalex-snapshot
Phylogenetic morphometrics (I): the use of landmark data in a phylogenetic framework
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2010.00332.xopenalex-snapshot
Morphology to the rescue: molecular data and the signal of morphological characters in combined phylogenetic analyses-a case study from mysmenid spiders (Araneae, Mysmenidae), with comments on the evolution of web architecture
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2011.00373.xopenalex-snapshot
Dual origins of social parasitism in North American Dialictus (Hymenoptera: Halictidae) confirmed using a phylogenetic approach
inferred← citeshttps://doi.org/10.1111/j.1096-3642.2012.00815.xopenalex-snapshot
DNA sequences corroborate Soesiladeepakius as a non-salticoid genus of jumping spiders: placement with lapsiines, phylogeny, and description of six new species (Araneae, Salticidae)
inferred← citeshttps://doi.org/10.1111/j.1365-2699.2006.01501.xopenalex-snapshot
Areas of endemism and distribution patterns for Neotropical Piper species (Piperaceae)
inferred← citeshttps://doi.org/10.1111/j.1365-294x.2007.03425.xopenalex-snapshot
Nuclear vs. plastid data: complex Pleistocene history of a circumpolar key species
inferred← citeshttps://doi.org/10.1111/j.1365-3113.2008.00426.xopenalex-snapshot
Insights into the phylogenetic relationships within Cixiidae (Hemiptera: Fulgoromorpha): cladistic analysis of a morphological dataset
inferred← citeshttps://doi.org/10.1111/j.1420-9101.2007.01425.xopenalex-snapshot
Out‐of‐Africa origin and dispersal‐mediated diversification of the butterfly genus Junonia (Nymphalidae: Nymphalinae)
inferred← citeshttps://doi.org/10.1111/j.1439-0469.2004.00245.xopenalex-snapshot
Adding mitochondrial sequence data (16S rRNA and cytochrome c oxidase subunit I) to the phylogeny of centipedes (Myriapoda: Chilopoda): an analysis of morphology and four molecular loci
inferred← citeshttps://doi.org/10.1111/j.1439-0469.2009.00539.xopenalex-snapshot
Patterns of speciation in two sibling species ofGraomys(Rodentia, Cricetidae) based on mtDNA sequences
inferred← citeshttps://doi.org/10.1111/j.1463-6395.2007.00282.xopenalex-snapshot
Comparative histology of the vaginal–cloacal region in Squamata and its phylogenetic implications
inferred← citeshttps://doi.org/10.1111/j.1463-6395.2012.00571.xopenalex-snapshot
Ontogeny and tissue differentiation of the pelvic girdle and hind limbs of anurans
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2005.00194.xopenalex-snapshot
Phylogenetic revision of the spider genus Negayan (Araneae, Anyphaenidae, Amaurobioidinae)
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2005.00216.xopenalex-snapshot
Filling a gap in the phylogeny of flatworms: relationships within the Rhabdocoela (Platyhelminthes), inferred from 18S ribosomal DNA sequences
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