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Polyploidy, the Nucleotype, and Novelty: The Impact of Genome Doubling on the Biology of the Cell

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Outgoing claims: the papers this work cites, builds on, or argues with.

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The Dark Matter of Biology

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Nucleolar dominance and ribosomal RNA gene silencing

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Regulation of nuclear shape and size in plants

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Subcellular scaling: does size matter for cell division?

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The Evolutionary Consequences of Polyploidy

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Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

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Transcriptional Amplification in Tumor Cells with Elevated c-Myc

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c-Myc Is a Universal Amplifier of Expressed Genes in Lymphocytes and Embryonic Stem Cells

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Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells

inferredcites →https://doi.org/10.1016/j.cell.2012.10.012openalex-snapshot

Revisiting Global Gene Expression Analysis

inferredcites →https://doi.org/10.1016/j.cell.2013.05.012openalex-snapshot

Gene Expression Is Circular: Factors for mRNA Degradation Also Foster mRNA Synthesis

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The Regulation of Cell Size

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A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

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The Role of Chromosome Domains in Shaping the Functional Genome

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Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells

inferredcites →https://doi.org/10.1016/j.cell.2015.05.002openalex-snapshot

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

inferredcites →https://doi.org/10.1016/j.cell.2016.04.047openalex-snapshot

Coexisting Liquid Phases Underlie Nucleolar Subcompartments

inferredcites →https://doi.org/10.1016/j.celrep.2016.09.007openalex-snapshot

Hierarchical Size Scaling during Multicellular Growth and Development

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Cell-Size-Dependent Transcription of FLC and Its Antisense Long Non-coding RNA COOLAIR Explain Cell-to-Cell Expression Variation

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Cell size control and gene expression homeostasis in single-cells

inferredcites →https://doi.org/10.1016/j.crvi.2008.06.007openalex-snapshot

Tetraploid citrus rootstocks are more tolerant to salt stress than diploid

inferredcites →https://doi.org/10.1016/j.cub.2010.10.002openalex-snapshot

A Coordinated Global Control over Cellular Transcription

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The C-value paradox, junk DNA and ENCODE

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Identification of Transcriptional and Metabolic Programs Related to Mammalian Cell Size

inferredcites →https://doi.org/10.1016/j.cub.2014.05.033openalex-snapshot

Connecting the Cytoskeleton to the Endoplasmic Reticulum and Golgi

inferredcites →https://doi.org/10.1016/j.cub.2015.01.012openalex-snapshot

Inverse Size Scaling of the Nucleolus by a Concentration-Dependent Phase Transition

inferredcites →https://doi.org/10.1016/j.cub.2015.03.037openalex-snapshot

Polyploidy

inferredcites →https://doi.org/10.1016/j.cub.2015.10.008openalex-snapshot

Active Control of Cell Size Generates Spatial Detail during Plant Organogenesis

inferredcites →https://doi.org/10.1016/j.cub.2017.08.015openalex-snapshot

The Adder Phenomenon Emerges from Independent Control of Pre- and Post-Start Phases of the Budding Yeast Cell Cycle

inferredcites →https://doi.org/10.1016/j.devcel.2016.09.004openalex-snapshot

Cellular Allometry of Mitochondrial Functionality Establishes the Optimal Cell Size

inferredcites →https://doi.org/10.1016/j.febslet.2015.05.037openalex-snapshot

The 4D nucleome: Evidence for a dynamic nuclear landscape based on co‐aligned active and inactive nuclear compartments

inferredcites →https://doi.org/10.1016/j.gde.2015.11.004openalex-snapshot

The mechanisms shaping the single-cell transcriptional landscape

inferredcites →https://doi.org/10.1016/j.gde.2018.01.004openalex-snapshot

The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation

inferredcites →https://doi.org/10.1016/j.jplph.2016.08.002openalex-snapshot

Tetraploidy enhances the ability to exclude chloride from leaves in carrizo citrange seedlings

inferredcites →https://doi.org/10.1016/j.jtbi.2015.08.024openalex-snapshot

Toward a biophysical understanding of the salt stress response of individual plant cells

inferredcites →https://doi.org/10.1016/j.jtbi.2017.04.006openalex-snapshot

On the origin of non-membrane-bound organelles, and their physiological function

inferredcites →https://doi.org/10.1016/j.mib.2015.05.012openalex-snapshot

Connecting growth with gene expression: of noise and numbers

inferredcites →https://doi.org/10.1016/j.mib.2017.12.012openalex-snapshot

How yeast coordinates metabolism, growth and division

inferredcites →https://doi.org/10.1016/j.molcel.2015.03.005openalex-snapshot

Single Mammalian Cells Compensate for Differences in Cellular Volume and DNA Copy Number through Independent Global Transcriptional Mechanisms

inferredcites →https://doi.org/10.1016/j.molcel.2016.05.011openalex-snapshot

“Cat’s Cradling” the 3D Genome by the Act of LncRNA Transcription

inferredcites →https://doi.org/10.1016/j.molcel.2016.05.018openalex-snapshot

Chromatin Domains: The Unit of Chromosome Organization

inferredcites →https://doi.org/10.1016/j.molp.2015.02.009openalex-snapshot

A Solution to the C-Value Paradox and the Function of Junk DNA: The Genome Balance Hypothesis

inferredcites →https://doi.org/10.1016/j.molp.2015.03.013openalex-snapshot

Linking the Cell Cycle with Innate Immunity in Arabidopsis

inferredcites →https://doi.org/10.1016/j.molp.2017.11.005openalex-snapshot

3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments

inferredcites →https://doi.org/10.1016/j.pbi.2003.09.009openalex-snapshot

“Big it up”: endoreduplication and cell-size control in plants

inferredcites →https://doi.org/10.1016/j.pbi.2014.05.008openalex-snapshot

Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time

inferredcites →https://doi.org/10.1016/j.pbi.2015.02.007openalex-snapshot

Epigenetic and developmental regulation in plant polyploids

inferredcites →https://doi.org/10.1016/j.pbi.2015.09.008openalex-snapshot

Transcriptional control of cell fate in the stomatal lineage

inferredcites →https://doi.org/10.1016/j.pbi.2016.01.002openalex-snapshot

Has the connection between polyploidy and diversification actually been tested?

inferredcites →https://doi.org/10.1016/j.pbi.2016.10.002openalex-snapshot

DREAMs make plant cells to cycle or to become quiescent

inferredcites →https://doi.org/10.1016/j.pbi.2016.11.007openalex-snapshot

Plasmodesmata enable multicellularity: new insights into their evolution, biogenesis, and functions in development and immunity

inferredcites →https://doi.org/10.1016/j.pbi.2017.03.004openalex-snapshot

Chromosome conformation capture-based studies reveal novel features of plant nuclear architecture

inferredcites →https://doi.org/10.1016/j.pbi.2018.05.018openalex-snapshot

Light and temperature shape nuclear architecture and gene expression

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The use of 2D-electrophoresis and de novo sequencing to characterize inter- and intra-cultivar protein polymorphisms in an allopolyploid crop

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Mesophyll diffusion conductance to CO2: An unappreciated central player in photosynthesis

inferredcites →https://doi.org/10.1016/j.semcdb.2013.02.002openalex-snapshot

Watching the grin fade: Tracing the effects of polyploidy on different evolutionary time scales

inferredcites →https://doi.org/10.1016/j.semcdb.2014.09.025openalex-snapshot

Intrinsically disordered proteins and multicellular organisms

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Global Transcriptional and Translational Repression in Human-Embryonic-Stem-Cell-Derived Rett Syndrome Neurons

inferredcites →https://doi.org/10.1016/j.stem.2014.05.017openalex-snapshot

The 3D Genome in Transcriptional Regulation and Pluripotency

inferredcites →https://doi.org/10.1016/j.tcb.2013.06.002openalex-snapshot

Physiological significance of polyploidization in mammalian cells

inferredcites →https://doi.org/10.1016/j.tcb.2017.02.006openalex-snapshot

Mitochondrial Function and Cell Size: An Allometric Relationship

inferredcites →https://doi.org/10.1016/j.tcb.2018.02.006openalex-snapshot

Endoreplication: The Good, the Bad, and the Ugly

inferredcites →https://doi.org/10.1016/j.tibtech.2015.06.004openalex-snapshot

Creating new interspecific hybrid and polyploid crops

inferredcites →https://doi.org/10.1016/j.tig.2012.07.003openalex-snapshot

Coordinating genome expression with cell size

inferredcites →https://doi.org/10.1016/j.tig.2014.09.011openalex-snapshot

Unreduced gametes: meiotic mishap or evolutionary mechanism?

inferredcites →https://doi.org/10.1016/j.tig.2016.12.003openalex-snapshot

Single-Cell Multiomics: Multiple Measurements from Single Cells

inferredcites →https://doi.org/10.1016/j.tig.2017.06.009openalex-snapshot

Evolutionary Dynamics of Unreduced Gametes

inferredcites →https://doi.org/10.1016/j.tplants.2014.02.001openalex-snapshot

Plant salt-tolerance mechanisms

inferredcites →https://doi.org/10.1016/j.tplants.2014.11.007openalex-snapshot

Plasticity in ploidy: a generalized response to stress

inferredcites →https://doi.org/10.1016/j.tplants.2016.02.005openalex-snapshot

Homoeologs: What Are They and How Do We Infer Them?

inferredcites →https://doi.org/10.1016/j.tplants.2016.06.003openalex-snapshot

Genome Stability and Evolution: Attempting a Holistic View

inferredcites →https://doi.org/10.1016/j.tplants.2017.08.006openalex-snapshot

Plant Systems Biology at the Single-Cell Level

inferredcites →https://doi.org/10.1016/j.tplants.2018.01.002openalex-snapshot

Gene Expression Dominance in Allopolyploids: Hypotheses and Models

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Genome streamlining and the elemental costs of growth

inferredcites →https://doi.org/10.1016/s0074-7696(08)60527-6openalex-snapshot

Cytoarchitecture and Physical Properties of Cytoplasm: Volume, Viscosity, Diffusion, Intracellular Surface Area

inferredcites →https://doi.org/10.1016/s0968-0004(01)01938-7openalex-snapshot

Macromolecular crowding: obvious but underappreciated

inferredcites →https://doi.org/10.1016/s1671-2927(11)60015-1openalex-snapshot

Comparison Between a Tetraploid Turnip and Its Diploid Progenitor (Brassica rapa L.): The Adaptation to Salinity Stress

inferredcites →https://doi.org/10.1016/s1673-8527(08)60142-3openalex-snapshot

Genome evolution in allopolyploid wheat—a revolutionary reprogramming followed by gradual changes

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Unraveling the Thousand Word Picture: An Introduction to Super-Resolution Data Analysis

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Quantifying the Influence of the Crowded Cytoplasm on Small Molecule Diffusion

inferredcites →https://doi.org/10.1021/cr300354gopenalex-snapshot

Bioanalysis of Eukaryotic Organelles

inferredcites →https://doi.org/10.1023/a:1004745516972openalex-snapshot

Diffusion Theory in Biology: A Relic of Mechanistic Materialism

inferredcites →https://doi.org/10.1023/a:1006446417196openalex-snapshot

Endoreduplication in higher plants

inferredcites →https://doi.org/10.1038/233350a0openalex-snapshot

Mitotic Cycles in Dicotyledons and Monocotyledons

inferredcites →https://doi.org/10.1038/299151a0openalex-snapshot

Variation in genome size—an ecological interpretation

inferredcites →https://doi.org/10.1038/355201a0openalex-snapshot

Is molecular biology yet a science?

inferredcites →https://doi.org/10.1038/468513aopenalex-snapshot

Import and nuclear size

inferredcites →https://doi.org/10.1038/hdy.2011.92openalex-snapshot

Proteomic divergence in Arabidopsis autopolyploids and allopolyploids and their progenitors

inferredcites →https://doi.org/10.1038/hdy.2012.77openalex-snapshot

Transgressive physiological and transcriptomic responses to light stress in allopolyploid Glycine dolichocarpa (Leguminosae)

inferredcites →https://doi.org/10.1038/hdy.2012.79openalex-snapshot

Polyploidy and its effect on evolutionary success: old questions revisited with new tools

inferredcites →https://doi.org/10.1038/hdy.2012.94openalex-snapshot

Homoeolog expression bias and expression level dominance in allopolyploid cotton

inferredcites →https://doi.org/10.1038/msb.2010.59openalex-snapshot

Sequence signatures and mRNA concentration can explain two‐thirds of protein abundance variation in a human cell line

inferredcites →https://doi.org/10.1038/msb4100170openalex-snapshot

Increased glycolytic flux as an outcome of whole‐genome duplication in yeast

inferredcites →https://doi.org/10.1038/nature07523openalex-snapshot

Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids

inferredcites →https://doi.org/10.1038/nature10098openalex-snapshot

Global quantification of mammalian gene expression control

inferredcites →https://doi.org/10.1038/nature14187openalex-snapshot

Polyploidy can drive rapid adaptation in yeast

inferredcites →https://doi.org/10.1038/nature14908openalex-snapshot

Dilution of the cell cycle inhibitor Whi5 controls budding-yeast cell size

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Scaling single-cell genomics from phenomenology to mechanism

inferredcites →https://doi.org/10.1038/nature23884openalex-snapshot

The 4D nucleome project

inferredcites →https://doi.org/10.1038/nature24277openalex-snapshot

Genetic effects on gene expression across human tissues

inferredcites →https://doi.org/10.1038/nature24288openalex-snapshot

Inertial picobalance reveals fast mass fluctuations in mammalian cells

inferredcites →https://doi.org/10.1038/nbt.3711openalex-snapshot

Revealing the vectors of cellular identity with single-cell genomics

inferredcites →https://doi.org/10.1038/nchembio.1558openalex-snapshot

Tracking single molecules at work in living cells

inferredcites →https://doi.org/10.1038/nchembio.1651openalex-snapshot

The intrinsic and extrinsic effects of N-linked glycans on glycoproteostasis

inferredcites →https://doi.org/10.1038/ncomms15060openalex-snapshot

Cell-size dependent progression of the cell cycle creates homeostasis and flexibility of plant cell size

inferredcites →https://doi.org/10.1038/ncomms1954openalex-snapshot

Cis- and trans-regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids

inferredcites →https://doi.org/10.1038/ncomms4930openalex-snapshot

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

inferredcites →https://doi.org/10.1038/nmeth.3175openalex-snapshot

Live-cell mass profiling: an emerging approach in quantitative biophysics

inferredcites →https://doi.org/10.1038/nrg.2016.127openalex-snapshot

The origin and evolution of cell types

inferredcites →https://doi.org/10.1038/nrg.2017.26openalex-snapshot

The evolutionary significance of polyploidy

inferredcites →https://doi.org/10.1038/nrg.2017.49openalex-snapshot

Evolutionary biology through the lens of budding yeast comparative genomics

inferredcites →https://doi.org/10.1038/nrg1711openalex-snapshot

The advantages and disadvantages of being polyploid

inferredcites →https://doi.org/10.1038/nrg3185openalex-snapshot

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

inferredcites →https://doi.org/10.1038/nrm.2015.8openalex-snapshot

Structure and function of ER membrane contact sites with other organelles

inferredcites →https://doi.org/10.1038/nrm3958openalex-snapshot

Diversity and selectivity in mRNA translation on the endoplasmic reticulum

inferredcites →https://doi.org/10.1038/s41467-017-02285-7openalex-snapshot

Stochastic gene expression in Arabidopsis thaliana

inferredcites →https://doi.org/10.1038/s41477-017-0005-9openalex-snapshot

Prominent topologically associated domains differentiate global chromatin packing in rice from Arabidopsis

inferredcites →https://doi.org/10.1038/s41598-017-01360-9openalex-snapshot

Genome of Paulownia (Paulownia fortunei) illuminates the related transcripts, miRNA and proteins for salt resistance

inferredcites →https://doi.org/10.1038/s41598-017-05413-xopenalex-snapshot

Epigenetics of the preferential silencing of Brachypodium stacei-originated 35S rDNA loci in the allotetraploid grass Brachypodium hybridum

inferredcites →https://doi.org/10.1038/s41598-017-06460-0openalex-snapshot

A few enlarged chloroplasts are less efficient in photosynthesis than a large population of small chloroplasts in Arabidopsis thaliana

inferredcites →https://doi.org/10.1038/srep23098openalex-snapshot

Physiological and proteomic responses to salt stress in chloroplasts of diploid and tetraploid black locust (Robinia pseudoacacia L.)

inferredcites →https://doi.org/10.1038/srep26515openalex-snapshot

Artificial Autopolyploidization Modifies the Tricarboxylic Acid Cycle and GABA Shunt in Arabidopsis thaliana Col-0

inferredcites →https://doi.org/10.1038/srep41061openalex-snapshot

The Global Relationship between Chromatin Physical Topology, Fractal Structure, and Gene Expression

inferredcites →https://doi.org/10.1038/srep44447openalex-snapshot

Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding

inferredcites →https://doi.org/10.1039/c5sm02572aopenalex-snapshot

The impact of physiological crowding on the diffusivity of membrane bound proteins

inferredcites →https://doi.org/10.1039/c6mb00740fopenalex-snapshot

Crosstalk between the nucleolus and the DNA damage response

inferredcites →https://doi.org/10.1046/j.1469-8137.2003.00948.xopenalex-snapshot

Advances in the study of polyploidy sincePlant speciation

inferredcites →https://doi.org/10.1073/pnas.1000852107openalex-snapshot

Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana

inferredcites →https://doi.org/10.1073/pnas.1016631108openalex-snapshot

Polyploidy and ecological adaptation in wild yarrow

inferredcites →https://doi.org/10.1073/pnas.1018821108openalex-snapshot

The influence of volume exclusion by chromatin on the time required to find specific DNA binding sites by diffusion

inferredcites →https://doi.org/10.1073/pnas.1101368108openalex-snapshot

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

inferredcites →https://doi.org/10.1073/pnas.1114477108openalex-snapshot

Physical limits of cells and proteomes

inferredcites →https://doi.org/10.1073/pnas.1503512112openalex-snapshot

Light signaling controls nuclear architecture reorganization during seedling establishment

inferredcites →https://doi.org/10.1073/pnas.1515170112openalex-snapshot

Autotetraploid rice methylome analysis reveals methylation variation of transposable elements and their effects on gene expression

inferredcites →https://doi.org/10.1073/pnas.1515741113openalex-snapshot

REDUCED CHLOROPLAST COVERAGE genes from Arabidopsis thaliana help to establish the size of the chloroplast compartment

inferredcites →https://doi.org/10.1073/pnas.1518620113openalex-snapshot

In-cell thermodynamics and a new role for protein surfaces

inferredcites →https://doi.org/10.1073/pnas.1518644113openalex-snapshot

Cell-to-cell movement of mitochondria in plants

inferredcites →https://doi.org/10.1073/pnas.1608140113openalex-snapshot

Selective nucleolus organizer inactivation in Arabidopsis is a chromosome position-effect phenomenon

inferredcites →https://doi.org/10.1073/pnas.1612256114openalex-snapshot

Form and function of topologically associating genomic domains in budding yeast

inferredcites →https://doi.org/10.1073/pnas.1616768113openalex-snapshot

Cell size and growth regulation in the Arabidopsis thaliana apical stem cell niche

inferredcites →https://doi.org/10.1073/pnas.1617636114openalex-snapshot

Transcriptional landscape of the human cell cycle

inferredcites →https://doi.org/10.1073/pnas.1619264114openalex-snapshot

Golgi apparatus self-organizes into the characteristic shape via postmitotic reassembly dynamics

inferredcites →https://doi.org/10.1073/pnas.1710791115openalex-snapshot

Multiple large-scale gene and genome duplications during the evolution of hexapods

inferredcites →https://doi.org/10.1073/pnas.49.6.897openalex-snapshot

A RELATIONSHIP BETWEEN DNA CONTENT, NUCLEAR VOLUME, AND MINIMUM MITOTIC CYCLE TIME

inferredcites →https://doi.org/10.1080/15476286.2015.1058686openalex-snapshot

Localized translation near the mitochondrial outer membrane: An update

inferredcites →https://doi.org/10.1080/15476286.2016.1154252openalex-snapshot

Proteome distribution between nucleoplasm and nucleolus and its relation to ribosome biogenesis inArabidopsis thaliana

inferredcites →https://doi.org/10.1080/15476286.2016.1236169openalex-snapshot

The Cajal body and the nucleolus: “In a relationship” or “It's complicated”?

inferredcites →https://doi.org/10.1080/15476286.2016.1236171openalex-snapshot

Growth rate controls mRNA turnover in steady and non-steady states

showing the first 200 of 521

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.24823/ejb.2022.1876zenodo-depositor-declared

EVOLUTIONARY PATTERNS OF GENOME SIZE AND CHROMOSOME NUMBER VARIATION IN BEGONIACEAE

inferred← citeshttps://doi.org/10.1002/9781394203680.ch20openalex-snapshot

Molecular Pharmacognosy

inferred← citeshttps://doi.org/10.1002/ajb2.1326openalex-snapshot

How does genome size affect the evolution of pollen tube growth rate, a haploid performance trait?

inferred← citeshttps://doi.org/10.1002/ajb2.1375openalex-snapshot

Autopolyploidy alters nodule‐level interactions in the legume–rhizobium mutualism

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Is selfing a reproductive assurance promoting polyploid establishment? Reduced fitness, leaky self‐incompatibility and lower inbreeding depression in neotetraploids

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Autopolyploidy: an epigenetic macromutation

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Evolutionary dynamics of genome size in a radiation of woody plants

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Polyploidization: Consequences of genome doubling on the evolutionary potential of populations

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Phenotypic trait variation in the North American Tragopogon allopolyploid complex

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Genome‐material costs and functional trade‐offs in the autopolyploid Solidago gigantea (giant goldenrod) series

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Neopolyploidy has variable effects on the diversity and composition of the wild strawberry microbiome

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Defining autopolyploidy: Cytology, genetics, and taxonomy

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Genome size variation in Cape schoenoid sedges (Schoeneae) and its ecophysiological consequences

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The immediate metabolomic effects of whole‐genome duplication in the greater duckweed, Spirodela polyrhiza

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Incongruent phylogenies and their implications for the study of diversification, taxonomy, and genome size evolution of Rhododendron

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Short‐ and long‐term consequences of genome doubling: a meta‐analysis

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The quiet evolutionary response to cellular challenges

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Natural autopolyploids: Understanding their formation and establishment

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The polyploid continuum and the landscape of polyploid genomic variation

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Drivers of insect herbivory resistance and tolerance to plant damage in the Brachypodium distachyon species complex

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Phylotranscriptomics and genome size evolution in Leucaena (Fabaceae): Paleotetraploid genomic stability overshadows diploidization and environmental effects

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Ploidy level predicts differences in minimum leaf conductance in quaking aspen, Populus tremuloides

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Pilot RNA‐seq data from 24 species of vascular plants at Harvard Forest

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Infrared spectroscopy for ploidy estimation: An example in two species of Veronica using fresh and herbarium specimens

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Genome‐wide patterns of homoeologous gene flow in allotetraploid coffee

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Synthetic polyploidy in spice crops: A review

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Metabolic Consequences of Hybridization in European Water Frogs ( Pelophylax esculentus complex)

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Genetic characteristics influence the phenotype of marine macroalga Fucus vesiculosus (Phaeophyceae)

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Plant genomes: Markers of evolutionary history and drivers of evolutionary change

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Coping with environmental constraints: Geographically divergent adaptive evolution and germination plasticity in the transcontinental Populus tremuloides

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Molecular phylogeny, genome sizes and chromosome numbers in melic grasses and its relatives (Pooideae, Poaceae) with a revised classification of the genus Melica

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Traversing the effects of ploidy changes in different Eragrostis curvula genotypes through high‐throughput RNA sequencing

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Beyond Transcript Concentrations: Quantifying Polyploid Expression Responses per Biomass, per Genome, and per Cell with RNA-Seq

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Evolution and Diversity of the Cotton Genome

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Application of Recent Advanced Technologies for the Improvement of Medicinal and Aromatic Plants

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Whole genome duplication drives transcriptome reprogramming in response to drought in alfalfa

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Establishment of Lily Bulb Scale Cutting Propagation System Promoted by Exogenous Plant Growth Regulators and Evaluation of Lily Cultivar Quality

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Enhanced Na+ and Cl− sequestration and secretion selectivity contribute to high salt tolerance in the tetraploid recretohalophyte Plumbago auriculata Lam.

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Consequences of whole genome duplication for 2n pollen performance

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Learning to tango with four (or more): the molecular basis of adaptation to polyploid meiosis

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Establishment of polyploidy in natural populations of Mimulus guttatus

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Genome size variation and whole-genome duplications in the monocot order Poales

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Genome sizes of grasses (Poaceae), chromosomal evolution, paleogenomics and the ancestral grass karyotype (AGK)

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Genome size variation in the Poaceae supertribe Poodae, the major grass lineage of temperate climates (tribes Aveneae, Festuceae and Poeae)

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A comprehensive review of cytogenetic data of Epidendroideae (Orchidaceae): the OrchidCounts, a new database as a tool for evolution studies

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Hidden in plain sight: Distinguishing a narrow endemic Clarkia from an allopolyploid derivative despite morphological and ecological overlap

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Chromosomal view of Lippia alba, a tropical polyploid complex under genome stabilization process

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Stable resynthesized Brassica napus lines show similar meiotic behaviour to established B. napus

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Comparative nucleolar ultrastructure analysis and life-history traits in three zooplankton species

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Biotechnology applied to Haematococcus pluvialis Fotow: challenges and prospects for the enhancement of astaxanthin accumulation

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Polyploidy and diploidization in soybean

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The effects of hybridization and genome doubling in plant evolution via allopolyploidy

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Aneuploids and its increment on diversity of Lippia alba polyploid complex: genetic aspects and origin

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Autotetraploid synthetic seeds of Ficus carica L. exhibit a superior cold acclimation system than their corresponding diploids

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Autotetraploid induction and one-step regeneration, and transcriptomic analysis in Dendrobium officinale

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Induction of in vitro Tetraploids in Kaempferia parviflora Wall. ex Baker and its Characterization

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The C- and G-value paradox with polyploidy, repeatomes, introns, phenomes and cell economy

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Genome size and guard cell length are associated in four species of Miconia (Miconieae, Melastomataceae)

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Estimation of genomic DNA content and its correlation with stomatal characteristics among some selected Canavalia species

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Nonadditive gene expression and epigenetic changes in polyploid plants and crops

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Chemical induction of polyploidy increases astaxanthin accumulation capacity in the microalgae Haematococcus lacustris (Gir.-Chantr.) Rostaf

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Identification of a novel Carassius amphitetraploid clone and its transcriptomic responses to herpesvirus infection

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PLANeT: Understanding and leveraging the genome of land plants for a sustainable future

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The rise of polyploids during environmental upheaval

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Kinetochore and ionomic adaptation to whole-genome duplication in Cochlearia shows evolutionary convergence in three autopolyploids

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Convergent functional evolution of mRNA-binding proteins fuels allotetraploid adaptation in cyprinids

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A three-step model for the establishment of polyploid plants

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Endopolyploidy pattern in Corydalis early spring geophytes

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Pollen grain performance in Psidium cattleyanum (Myrtaceae): a pseudogamous polyploid species

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Genome size and DNA endoreplication pattern of non-generative cells in the antheridia of Chara connivens Salzmann ex A. Braun from Northern Morocco

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Climate-driven past and present interspecies gene flow may have contributed to shape microscale adaptation capacity in Tillandsia lomas in hyperarid south American desert systems

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Does the water regime differentially modulate the responses to water stress in Lippia alba (Verbenaceae) genotypes with different ploidy levels?

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Insect polyploid adaptation for cell number and size varies in longstanding versus neopolyploid lines of the wasp Nasonia vitripennis

inferred← citeshttps://doi.org/10.1016/j.molp.2019.12.003openalex-snapshot

“Winter Is Coming”: How did Polyploid Plants Survive?

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Rewilding staple crops for the lost halophytism: Toward sustainability and profitability of agricultural production systems

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The genetic control of succulent leaf development

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Polyploidization disrupts drought response and epigenetic patterns in the desert wild potato species Solanum kurtzianum

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In vitro tetraploidy induction creates enhancements in morphological, physiological and phytochemical characteristics in the fig tree (Ficus Carica L.)

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Colchicine-induced chromosome duplication via callus-derived adventitious bud regeneration in Stylosanthes guianensis (Aubl.) Sw. (Fabaceae)

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Subsurface aeration of tidal wetland soils: Root-system structure and aerenchyma connectivity in Spartina (Poaceae)

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The functional significance of the stomatal size to density relationship: Interaction with atmospheric [CO2] and role in plant physiological behaviour

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Parental dominance of the cleopatra mandarin parent in the citrandarin allotetraploid hybrid shapes root-mediated salt tolerance

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Duplicated gene networks promote ‘hopeful’ phenotypic variation

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Domestication of Crop Metabolomes: Desired and Unintended Consequences

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Exploring environmental selection on genome size in angiosperms

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Polyploidy in urban environments

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Effect of Whole-Genome Duplication on the Evolutionary Rescue of Sterile Hybrid Monkeyflowers

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Chasing the mechanisms of ecologically adaptive salinity tolerance

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Genomics of plant speciation

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Polyploidy and plant resilience to environmental stresses: Molecular mechanisms and future applications

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Morphological characterization of the 1-year-old shoots in tetraploid vs. diploid leccino olive ( Olea Europaea L.) cultivar

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Diploid (2n = 28) to 22-ploid (2n = 308): Functional trait variation and the large-genome constraint in mulberry ( Morus spp.)

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How environment and genetic architecture of unreduced gametes shape the establishment of autopolyploids

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Interspecific introgression mediates adaptation to whole genome duplication

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Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication

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On the way to diploidization and unexpected ploidy in the grass Sporobolus section Spartina mesopolyploids

inferred← citeshttps://doi.org/10.1038/s41467-025-61676-3openalex-snapshot

The subordinate role of pseudogenization to recombinative deletion following polyploidization in angiosperms

inferred← citeshttps://doi.org/10.1038/s41477-020-00785-xopenalex-snapshot

Repeat-sequence turnover shifts fundamentally in species with large genomes

inferred← citeshttps://doi.org/10.1038/s41477-022-01102-4openalex-snapshot

Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition

inferred← citeshttps://doi.org/10.1038/s41586-025-08689-6openalex-snapshot

Genome duplication in a long-term multicellularity evolution experiment

inferred← citeshttps://doi.org/10.1038/s41598-019-41474-wopenalex-snapshot

Bromeliaceae subfamilies show divergent trends of genome size evolution

inferred← citeshttps://doi.org/10.1038/s41598-021-88383-5openalex-snapshot

Tetraploid Citrumelo 4475 rootstocks improve diploid common clementine tolerance to long-term nutrient deficiency

inferred← citeshttps://doi.org/10.1038/s41598-025-91103-yopenalex-snapshot

In vitro synthetic polyploidization and enhancement of anticancer compounds in Catharanthus Roseus (L.) G. Don important cultivars

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Biocultural diversity and crop improvement

inferred← citeshttps://doi.org/10.1071/bt25093openalex-snapshot

Polyploidy arises independently of hybrid status in clonal narrow-range endemic Callistemon from East Gippsland, Victoria

inferred← citeshttps://doi.org/10.1073/pnas.2200106119openalex-snapshot

A temporal gradient of cytonuclear coordination of chaperonins and chaperones during RuBisCo biogenesis in allopolyploid plants

inferred← citeshttps://doi.org/10.1073/pnas.2204187119openalex-snapshot

Organellar transcripts dominate the cellular mRNA pool across plants of varying ploidy levels

inferred← citeshttps://doi.org/10.1073/pnas.2211133119openalex-snapshot

The recipe for cytonuclear interaction begins with a superabundance of plastid and mitochondrial mRNAs

inferred← citeshttps://doi.org/10.1073/pnas.2214070119openalex-snapshot

Global gradients in the distribution of animal polyploids

inferred← citeshttps://doi.org/10.1073/pnas.2307289120openalex-snapshot

The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil

inferred← citeshttps://doi.org/10.1073/pnas.2424785122openalex-snapshot

Whole-genome duplication leads to significant but inconsistent changes in climatic niche

inferred← citeshttps://doi.org/10.1073/pnas.2522063123openalex-snapshot

Growth under pressure: The pros and cons of polyploidy induced by stress

inferred← citeshttps://doi.org/10.1073/pnas.2522064123openalex-snapshot

Genome evolution through polyploidy: Enhancing plant stress resilience in agriculture

inferred← citeshttps://doi.org/10.1073/pnas.2533430123openalex-snapshot

Evolution after whole-genome duplication (WGD) drives phenotypic and transcriptomic divergence more than WGD in an autopolyploid herb

inferred← citeshttps://doi.org/10.1080/01140671.2022.2028861openalex-snapshot

Heterochromatin and polyploidy in Opuntia Mill. (Cactaceae: Opuntioideae): implications for plant breeding

inferred← citeshttps://doi.org/10.1080/01140671.2024.2358877openalex-snapshot

Unveiling enhanced photosynthesis in tetraploid sour jujube through transcriptome analysis

inferred← citeshttps://doi.org/10.1080/01916122.2022.2103196openalex-snapshot

Revisiting R.H. Tschudy’s fern-spore spike concept 40 years later: connecting Tschudy’s ‘disaster taxon’ concept with paleopolyploidization in Stenochlaena J. Sm

inferred← citeshttps://doi.org/10.1080/13102818.2024.2409448openalex-snapshot

On disagreements of theories of evolution

inferred← citeshttps://doi.org/10.1086/706186openalex-snapshot

The Scaling of Genome Size and Cell Size Limits Maximum Rates of Photosynthesis with Implications for Ecological Strategies

inferred← citeshttps://doi.org/10.1086/707728openalex-snapshot

Ploidy in Plant Tolerance to Apical Meristem Damage: A Test of Relative Costs and Benefits

inferred← citeshttps://doi.org/10.1086/713445openalex-snapshot

The Next Generation of Adaptive Radiation Studies in Plants

inferred← citeshttps://doi.org/10.1086/743731openalex-snapshot

Leveraging Modern Coexistence Theory to understand how stress modifies outcomes of diploid-polyploid competition: a demonstration and review

inferred← citeshttps://doi.org/10.1093/9780197831533.001.0001openalex-snapshot

Adaptationist Evo-Devo

inferred← citeshttps://doi.org/10.1093/9780197831533.002.0004openalex-snapshot

Dedication

inferred← citeshttps://doi.org/10.1093/9780197831533.003.0001openalex-snapshot

Introduction

inferred← citeshttps://doi.org/10.1093/9780197831533.003.0002openalex-snapshot

Standard adaptation

inferred← citeshttps://doi.org/10.1093/9780197831533.003.0003openalex-snapshot

Developmental potential and adaptation

inferred← citeshttps://doi.org/10.1093/9780197831533.003.0004openalex-snapshot

Evolution and developmental systems

inferred← citeshttps://doi.org/10.1093/9780197831533.003.0005openalex-snapshot

Understanding phenotypic plasticity and its role in evolution

inferred← citeshttps://doi.org/10.1093/9780197831533.003.0006openalex-snapshot

Building adaptationist evo-devo explanations of organismal form

inferred← citeshttps://doi.org/10.1093/9780197831533.003.0007openalex-snapshot

Conclusion

inferred← citeshttps://doi.org/10.1093/9780197831533.003.0008openalex-snapshot

Glossary

inferred← citeshttps://doi.org/10.1093/aob/mcaa007openalex-snapshot

For things to stay the same, things must change: polyploidy and pollen tube growth rates

inferred← citeshttps://doi.org/10.1093/aob/mcaa107openalex-snapshot

Impact of genome duplication on secondary metabolite composition in non-cultivated species: a systematic meta-analysis

inferred← citeshttps://doi.org/10.1093/aob/mcac021openalex-snapshot

Are chromosome number and genome size associated with habit and environmental niche variables? Insights from the Neotropical orchids

inferred← citeshttps://doi.org/10.1093/aob/mcaf012openalex-snapshot

Distinct patterns of genome size evolution in each bryophyte lineage are not correlated with whole genome duplication

inferred← citeshttps://doi.org/10.1093/aob/mcaf208openalex-snapshot

Molecular investigation of the progenitors, origin and domestication patterns of diploid Chinese old garden roses

inferred← citeshttps://doi.org/10.1093/aob/mcaf263openalex-snapshot

From bats to bees: changes in flower anthesis and nectar traits drive a pollination ecotype in dwarf Caryocar brasiliense (Caryocaraceae)

inferred← citeshttps://doi.org/10.1093/aob/mcz108openalex-snapshot

Plant speciation in the age of climate change

inferred← citeshttps://doi.org/10.1093/aobpla/plz028openalex-snapshot

The morphometrics of autopolyploidy: insignificant differentiation among sexual–apomictic cytotypes

inferred← citeshttps://doi.org/10.1093/botlinnean/boac061openalex-snapshot

Molecular phylogenetics shed light on polyploid speciation in gorses (Ulex, Fabaceae: Genisteae) and on the origin of the invasive Ulex europaeus

inferred← citeshttps://doi.org/10.1093/evlett/qrac003openalex-snapshot

The immediate effects of polyploidization ofSpirodela polyrhizachange in a strain-specific way along environmental gradients

inferred← citeshttps://doi.org/10.1093/evlett/qrad072openalex-snapshot

Neopolyploidy increases stress tolerance and reduces fitness plasticity across multiple urban pollutants: support for the “general-purpose” genotype hypothesis

inferred← citeshttps://doi.org/10.1093/evolut/qpag107openalex-snapshot

Autopolyploid establishment under gametophytic self-incompatibility: the impact of self-fertilization and pollen limitation

inferred← citeshttps://doi.org/10.1093/genetics/iyac118openalex-snapshot

Variation in cytonuclear expression accommodation among allopolyploid plants

inferred← citeshttps://doi.org/10.1093/gigascience/giac078openalex-snapshot

Evolution of complex genome architecture in gymnosperms

inferred← citeshttps://doi.org/10.1093/gpbjnl/qzae078openalex-snapshot

Evolution of Plant Genome Size and Composition

inferred← citeshttps://doi.org/10.1093/hr/uhag096openalex-snapshot

Triploid loquat maintains photosynthetic stability under freezing stress through excessive accumulation of unsaturated lipids

inferred← citeshttps://doi.org/10.1093/icb/icab161openalex-snapshot

Next Steps in Integrative Biology: Mapping Interactive Processes Across Levels of Biological Organization

inferred← citeshttps://doi.org/10.1093/jhered/esaa060openalex-snapshot

Opinion: Genetic Conflict With Mobile Elements Drives Eukaryotic Genome Evolution, and Perhaps Also Eukaryogenesis

inferred← citeshttps://doi.org/10.1093/jxb/erab179openalex-snapshot

Phenotypic diploidization in plant functional traits uncovered by synthetic neopolyploids in Dianthus broteri

inferred← citeshttps://doi.org/10.1093/jxb/erab184openalex-snapshot

Homoploid F1 hybrids and segmental allotetraploids of japonica and indica rice subspecies show similar and enhanced tolerance to nitrogen deficiency than parental lines

inferred← citeshttps://doi.org/10.1093/jxb/erac355openalex-snapshot

Homoeologous exchange enables rapid evolution of tolerance to salinity and hyper-osmotic stresses in a synthetic allotetraploid wheat

inferred← citeshttps://doi.org/10.1093/jxb/erad235openalex-snapshot

Endoreduplication in plant organogenesis: a means to boost fruit growth

inferred← citeshttps://doi.org/10.1093/jxb/eraf128openalex-snapshot

Genomic and evolutionary evidence for drought adaptation of allopolyploid Brachypodium hybridum

inferred← citeshttps://doi.org/10.1093/jxb/eraf380openalex-snapshot

Development of an efficient CRISPR-mediated genome editing platform in the diploid-polyploid model system Tragopogon (Asteraceae)

inferred← citeshttps://doi.org/10.1093/jxb/eraf529openalex-snapshot

Tetraploid turnips ( Brassica rapa ssp. rapa ) are highly tolerant of tetravalent formation and aneuploidy

inferred← citeshttps://doi.org/10.1093/molbev/msab001openalex-snapshot

De Novo Mutation and Rapid Protein (Co-)evolution during Meiotic Adaptation in Arabidopsis arenosa

inferred← citeshttps://doi.org/10.1093/molbev/msab096openalex-snapshot

Novelty and Convergence in Adaptation to Whole Genome Duplication

inferred← citeshttps://doi.org/10.1093/molbev/msac024openalex-snapshot

Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton ( Gossypium ) and Unequally between Subgenomes

inferred← citeshttps://doi.org/10.1093/molbev/msac074openalex-snapshot

Global Patterns of Subgenome Evolution in Organelle-Targeted Genes of Six Allotetraploid Angiosperms

inferred← citeshttps://doi.org/10.1093/molbev/msae095openalex-snapshot

Evolutionary Dynamics of Chromatin Structure and Duplicate Gene Expression in Diploid and Allopolyploid Cotton

inferred← citeshttps://doi.org/10.1093/molbev/msae178openalex-snapshot

A Quantitative Computational Framework for Allopolyploid Single-Cell Data Integration and Core Gene Ranking in Development

inferred← citeshttps://doi.org/10.1093/molbev/msae213openalex-snapshot

Chromatin Accessibility and Gene Expression Vary Between a New and Evolved Autopolyploid of Arabidopsis arenosa

inferred← citeshttps://doi.org/10.1093/nsr/nwaa277openalex-snapshot

Genomic mosaicism due to homoeologous exchange generates extensive phenotypic diversity in nascent allopolyploids

inferred← citeshttps://doi.org/10.1093/plcell/koaa015openalex-snapshot

Polyploidy: an evolutionary and ecological force in stressful times

inferred← citeshttps://doi.org/10.1093/plcell/koab225openalex-snapshot

Fifteen compelling open questions in plant cell biology

inferred← citeshttps://doi.org/10.1093/plcell/koae021openalex-snapshot

Polyploid plants take cytonuclear perturbations in stride

inferred← citeshttps://doi.org/10.1098/rsbl.2022.0477openalex-snapshot

Inbreeding depression in polyploid species: a meta-analysis

inferred← citeshttps://doi.org/10.1098/rspb.2020.2154openalex-snapshot

When everything changes at once: finding a new normal after genome duplication

inferred← citeshttps://doi.org/10.1098/rspb.2020.3145openalex-snapshot

Maximum CO 2 diffusion inside leaves is limited by the scaling of cell size and genome size

inferred← citeshttps://doi.org/10.1098/rstb.2020.0117openalex-snapshot

Epigenetics and the success of invasive plants

inferred← citeshttps://doi.org/10.1101/2020.01.31.929109openalex-snapshot

Genomic novelty and process-level convergence in adaptation to whole genome duplication

inferred← citeshttps://doi.org/10.1101/2020.03.31.017939openalex-snapshot

Convergence and novelty in adaptation to whole genome duplication in three independent polyploids

inferred← citeshttps://doi.org/10.1101/2020.03.31.018945openalex-snapshot

Progress Towards Plant Community Transcriptomics: Pilot RNA-Seq Data from 24 Species of Vascular Plants at Harvard Forest

inferred← citeshttps://doi.org/10.1101/2022.03.09.483717openalex-snapshot

Polyploidy and plant-fungus symbiosis: evidence of cytotype-specific microbiomes in the halophyte Salicornia (Amaranthaceae)

inferred← citeshttps://doi.org/10.1101/2022.10.06.511129openalex-snapshot

Inbreeding depression in polyploid species: a meta-analysis

inferred← citeshttps://doi.org/10.1101/2023.01.11.523565openalex-snapshot

Novel reassortments of variation underlie repeated adaptation to whole genome duplication in two outcrossing Arabidopsis species

inferred← citeshttps://doi.org/10.1101/2023.04.28.538696openalex-snapshot

The duplication of genomes and gene regulatory networks and its potential for evolutionary adaptation and survival

inferred← citeshttps://doi.org/10.1101/2023.06.28.546823openalex-snapshot

Evidence for increased stress resistance due to polyploidy from synthetic autotetraploid Caenorhabditis elegans

inferred← citeshttps://doi.org/10.1101/2023.09.13.557598openalex-snapshot

A phylogenomic approach, combined with morphological characters gleaned via machine learning, uncovers the hybrid origin and biogeographic diversification of the plum genus

inferred← citeshttps://doi.org/10.1101/2023.09.27.559727openalex-snapshot

Kinetochore and ionomic adaptation to whole genome duplication

inferred← citeshttps://doi.org/10.1101/2024.04.18.588554openalex-snapshot

Whole-genome duplication in the Multicellularity Long Term Evolution Experiment

inferred← citeshttps://doi.org/10.1101/2024.08.01.606180openalex-snapshot

Rapid reprogramming and stabilisation of homoeolog expression bias in hexaploid wheat biparental populations

inferred← citeshttps://doi.org/10.1101/2024.09.12.612700openalex-snapshot

Conserved Evolutionary Response to Whole Genome Duplication in Angiosperms Revealed Using High Resolution Gene Expression Profiling

inferred← citeshttps://doi.org/10.1101/2024.09.30.614436openalex-snapshot

Genomic stability in the Galápagos Scalesia adaptive radiation: Consistent transposable element accumulation despite hybridization and ecological niche shifts

inferred← citeshttps://doi.org/10.1101/2025.01.22.633974openalex-snapshot

Extensive genome evolution distinguishes maize within a stable tribe of grasses

inferred← citeshttps://doi.org/10.1101/2025.06.19.660553openalex-snapshot

Whole genome duplication enables rapid evolution of male-biased sex allocation in Galax urceolata

inferred← citeshttps://doi.org/10.1101/2025.11.25.690567openalex-snapshot

The origins and adaptive consequences of polyploidy in a dominant prairie grass

inferred← citeshttps://doi.org/10.1105/tpc.19.00832openalex-snapshot

Gene Balance Predicts Transcriptional Responses Immediately Following Ploidy Change in Arabidopsis thaliana

inferred← citeshttps://doi.org/10.1111/1365-2435.70133openalex-snapshot

Context‐dependent relationships between genomic traits and plant performance in temperate grasslands

inferred← citeshttps://doi.org/10.1111/1365-2745.70096openalex-snapshot

Polyploid—Diploid coexistence in the greater duckweed Spirodela polyrhiza

inferred← citeshttps://doi.org/10.1111/brv.12661openalex-snapshot

Molecular regulatory mechanisms underlying the adaptability of polyploid plants

inferred← citeshttps://doi.org/10.1111/cbdd.13988openalex-snapshot

Information‐theoretic approach in allometric scaling relations of DNA and proteins

inferred← citeshttps://doi.org/10.1111/fwb.70111openalex-snapshot

Phenotypic Divergence Associated With Genomic Changes Suggests Physiological Adaptation in Obligate Asexuals

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